log.txt

select rsid, refallele, ceu_snpfreq from var_hapmap.snp_frequencies_test
select rsid, refallele, ceu_snpfreq from var_hapmap.snp_frequencies_test
yep
yep
yep
yep
yep
yep
yep
yep
yep
yep
yep
yep
4443421
yep
yep
4443421
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7078922,17078970,17078976,17078983,17078994,17078996,17079000,17079006,17079023,17079025,17079037,17079848,17082378,17082409,17082593,17082624,17082769,17083184,17085057,17086066,17086222,17088358,17088537,17088850,17089778,17089789,17090300,17090302,17090310,17091783,17093449,17094709,17098361,17098380,17098460,17099637,17100817,17101554,17101832,17102442,17105388,17105836,17106714,17108545,17108797,17109310,17109809,17109903,17110185,17112257,17112700,17115063,17115149,17116366,17117041,17119044,17120152,17120368,17121292,17121482,17122378,17122383,17124301,17124643,17124692,17127871,17128633,17128948,17129082,17129806,17130263,17130294,17130580,17133813,17134189,17135372,17135521,17135617,17136113,17138611,17140460,17141139,17141216,17142129,17142737,17142901,17144007,17144687,17146359,17146434,17146977,17147528,17147907,17148028,17148032,17148044,17148556,17150293,17153843,17154103,17155207,17155277,17157252,17159766,17162410,17164627,17164630,17165697,17165717,17167074,17170073,17170317,17171540,17172129,17173608,17182398,17196459,17198106,17198995,17207304,17209139,17215740,17232052,17237450,17241402,17247038,17259996,17268401,17274385,17288121,17288360,17304611,17316837,17321615,17323959,17328673,17329941,17333924,17335283,17336381,17339856,17345806,17355010,17358230,17359728,17373628,17382217,17395014,17409255,17412126,17423804,17426932,17429447,17441930,17450634,17451753,17459676,17462354,17463112,17490715,17493901,17501584,17502407,17515010,17524612,17529824,17536791,17558056,17576261,17578436,17584646,17612087,17620896,17625605,17626141,17626204,17629353,17633648,17634077,17634220,17634358,17634531,17639203,17642669,17643301,17643366,17645807,17657199,17657444,17666347,17669038,17671490,17678646,17678647,17680945,17682856,17690761,17693732,17696125,17697347,17702221,17724855,17726892,17727332,17735195,17735565,17738933,17747388,17750345,17755206,17759253,17767102,17771861,17772847,17774878,17775838,17786967,17788937,17791200,17803945,17827026,17834692,17836650,17839548,17852414,17865923,17866339,17880362,28362591,28365067,28365932,28483633,28615409,28966395,28986464,28987085,28994868,28994870,28994874,34228141,34378923,34901222,34915952
blah
None
None
yep
None
yep
test
select pop_name, minlon, minlat, frequency from
  (select * from interpretome_ancestry.alfred where site_name="rs679783" and allele_name="C") a
  join interpretome_ancestry.alfred_populations using (pop_uid)

    select pop_name, minlon, minlat, frequency from
    (select * from interpretome_ancestry.alfred where site_name="rs679783" and allele_name="C") a
    join interpretome_ancestry.alfred_populations using (pop_uid)
  
{'strand': u'-'}

    select pop_name, minlon, minlat, frequency from
    (select * from interpretome_ancestry.alfred where site_name="rs679783" and allele_name="C") a
    join interpretome_ancestry.alfred_populations using (pop_uid)
  
-

    select pop_name, minlon, minlat, frequency from
    (select * from interpretome_ancestry.alfred where site_name="rs679783" and allele_name="G") a
    join interpretome_ancestry.alfred_populations using (pop_uid)
  
select alfred_uid from interpretome_ancestry.alfred_variant_info where rs_number ="4988235"
select alfred_uid from interpretome_ancestry.alfred_variant_info where rs_number ="rs4988235"
select site_name from interpretome_ancestry.alfred_polymorphism where site_uid ="4988235"
select alfred_uid from interpretome_ancestry.alfred_variant_info where rs_number ="rs4988235"
select site_name from interpretome_ancestry.alfred_polymorphism where site_uid ="{'alfred_uid': u'SI001784U'}"
select alfred_uid from interpretome_ancestry.alfred_variant_info where rs_number ="rs4988235"
select site_name from interpretome_ancestry.alfred_polymorphism where site_uid ="SI001784U"
select alfred_uid from interpretome_ancestry.alfred_variant_info where rs_number ="rs4988235"
select site_name from interpretome_ancestry.alfred_polymorphism where site_uid ="SI001784U"

    select pop_name, minlon, maxlon, minlat, maxlat, frequency from
    (select * from interpretome_ancestry.alfred where site_name="rsintron 13 C/T (-13910 ) SNP" and allele_name="C") a
    join interpretome_ancestry.alfred_populations using (pop_uid)
  

    select pop_name, minlon, maxlon, minlat, maxlat, frequency from
    (select * from interpretome_ancestry.alfred where site_name="intron 13 C/T (-13910 ) SNP" and allele_name="C") a
    join interpretome_ancestry.alfred_populations using (pop_uid)
  

    select pop_name, minlon, maxlon, minlat, maxlat, frequency from
    (select * from interpretome_ancestry.alfred where site_name="intron 13 CT (-13910 ) SNP" and allele_name="C") a
    join interpretome_ancestry.alfred_populations using (pop_uid)
  

    select pop_name, minlon, maxlon, minlat, maxlat, frequency from
    (select * from interpretome_ancestry.alfred where site_name="intron 13 CT (-13910 ) SNP" and allele_name="C") a
    join interpretome_ancestry.alfred_populations using (pop_uid)
  
yay
it works
/tmp/tmp6fDvjM
/tmp/tmpJOnNSa
/tmp/tmpUTSAWA
/tmp/tmpy8r5_1
/tmp/tmp6wue22.html
/tmp/tmpAPi33H.html
/tmp/tmplzG3vg.html
/tmp/tmpRgHaOZ.html
/tmp/tmpvgOw0S.html
/tmp/tmpCzghud.html
/tmp/tmp6vO6kw.html
/tmp/tmpAYh2GR.html
/tmp/tmphlS6Dl.html
/tmp/tmpOGipIj.html
/tmp/tmpNdwheK.html
/tmp/tmpeuF7Q3.html
/tmp/tmpkRuVqL.html
out was : 
out was : Mon Apr 30 16:45:46 esquilax.stanford.edu wkhtmltoimage[53106] <Error>: kCGErrorFailure: Set a breakpoint @ CGErrorBreakpoint() to catch errors as they are logged.
Loading page (1/2)
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Error: Could not write to output file
out was : 
out was : Mon Apr 30 16:46:20 esquilax.stanford.edu wkhtmltoimage[53113] <Error>: kCGErrorFailure: Set a breakpoint @ CGErrorBreakpoint() to catch errors as they are logged.
Loading page (1/2)
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[===============>                                            ] 25%
[============================================================] 100%
Done
out was : 
out was : Mon Apr 30 16:46:28 esquilax.stanford.edu wkhtmltoimage[53117] <Error>: kCGErrorFailure: Set a breakpoint @ CGErrorBreakpoint() to catch errors as they are logged.
Loading page (1/2)
[>                                                           ] 0%
[======>                                                     ] 10%
[==============================>                             ] 50%
[============================================================] 100%
Rendering (2/2)                                                    
[>                                                           ] 0%
[===============>                                            ] 25%
[============================================================] 100%
Done