diff --git a/lib/minimap2/aligner.rb b/lib/minimap2/aligner.rb index 538173e..26394c7 100644 --- a/lib/minimap2/aligner.rb +++ b/lib/minimap2/aligner.rb @@ -80,8 +80,8 @@ def initialize( map_opt[:b] = scoring[1] map_opt[:q] = scoring[2] map_opt[:e] = scoring[3] - map_opt[:q2] = map_opt.q - map_opt[:e2] = map_opt.e + map_opt[:q2] = map_opt[:q] + map_opt[:e2] = map_opt[:e] if scoring.size >= 6 map_opt[:q2] = scoring[4] map_opt[:e2] = scoring[5]