diff --git a/administrator/components/com_admin/script.php b/administrator/components/com_admin/script.php
index b96f3d586def8..0a37ad74b58c5 100644
--- a/administrator/components/com_admin/script.php
+++ b/administrator/components/com_admin/script.php
@@ -440,10 +440,14 @@ public function deleteUnexistingFiles($dryRun = false, $suppressOutput = false)
             '/administrator/components/com_admin/sql/updates/mysql/5.2.0-2024-08-22.sql',
             '/administrator/components/com_admin/sql/updates/mysql/5.2.0-2024-09-17.sql',
             '/administrator/components/com_admin/sql/updates/mysql/5.2.2-2024-09-24.sql',
+            '/administrator/components/com_admin/sql/updates/mysql/5.2.3-2025-01-09.sql',
             '/administrator/components/com_admin/sql/updates/mysql/5.3.0-2024-10-13.sql',
             '/administrator/components/com_admin/sql/updates/mysql/5.3.0-2024-10-26.sql',
             '/administrator/components/com_admin/sql/updates/mysql/5.3.0-2024-12-09.sql',
             '/administrator/components/com_admin/sql/updates/mysql/5.3.0-2024-12-19.sql',
+            '/administrator/components/com_admin/sql/updates/mysql/5.3.0-2025-02-09.sql',
+            '/administrator/components/com_admin/sql/updates/mysql/5.3.0-2025-02-22.sql',
+            '/administrator/components/com_admin/sql/updates/mysql/5.3.0-2025-03-14.sql',
             '/administrator/components/com_admin/sql/updates/postgresql/5.0.0-2023-03-11.sql',
             '/administrator/components/com_admin/sql/updates/postgresql/5.0.0-2023-03-17.sql',
             '/administrator/components/com_admin/sql/updates/postgresql/5.0.0-2023-07-12.sql',
@@ -470,9 +474,19 @@ public function deleteUnexistingFiles($dryRun = false, $suppressOutput = false)
             '/administrator/components/com_admin/sql/updates/postgresql/5.2.0-2024-08-22.sql',
             '/administrator/components/com_admin/sql/updates/postgresql/5.2.0-2024-09-17.sql',
             '/administrator/components/com_admin/sql/updates/postgresql/5.2.2-2024-09-24.sql',
+            '/administrator/components/com_admin/sql/updates/postgresql/5.2.3-2025-01-09.sql',
             '/administrator/components/com_admin/sql/updates/postgresql/5.3.0-2024-10-26.sql',
             '/administrator/components/com_admin/sql/updates/postgresql/5.3.0-2024-12-09.sql',
             '/administrator/components/com_admin/sql/updates/postgresql/5.3.0-2024-12-19.sql',
+            '/administrator/components/com_admin/sql/updates/postgresql/5.3.0-2025-02-09.sql',
+            '/administrator/components/com_admin/sql/updates/postgresql/5.3.0-2025-02-22.sql',
+            '/administrator/components/com_admin/sql/updates/postgresql/5.3.0-2025-03-14.sql',
+            '/administrator/components/com_content/forms/filter_featured.xml',
+            '/administrator/components/com_content/tmpl/featured/default.php',
+            '/administrator/components/com_content/tmpl/featured/default.xml',
+            '/administrator/components/com_content/tmpl/featured/default_stage_body.php',
+            '/administrator/components/com_content/tmpl/featured/default_stage_footer.php',
+            '/administrator/components/com_content/tmpl/featured/emptystate.php',
             '/administrator/components/com_finder/helpers/indexer/adapter.php',
             '/administrator/components/com_finder/helpers/indexer/helper.php',
             '/administrator/components/com_finder/helpers/indexer/parser.php',
@@ -489,18 +503,41 @@ public function deleteUnexistingFiles($dryRun = false, $suppressOutput = false)
             '/libraries/src/Application/CLI/Output/Stdout.php',
             '/libraries/src/Application/CLI/Output/Xml.php',
             '/libraries/src/Application/CliApplication.php',
+            '/libraries/src/Filesystem/File.php',
+            '/libraries/src/Filesystem/FilesystemHelper.php',
+            '/libraries/src/Filesystem/Folder.php',
+            '/libraries/src/Filesystem/Meta/language/en-GB/en-GB.lib_joomla_filesystem_patcher.ini',
+            '/libraries/src/Filesystem/Patcher.php',
+            '/libraries/src/Filesystem/Path.php',
+            '/libraries/src/Filesystem/Stream.php',
+            '/libraries/src/Filesystem/Streams/StreamString.php',
+            '/libraries/src/Filesystem/Support/StringController.php',
             '/libraries/src/Input/Cookie.php',
             '/libraries/src/Input/Files.php',
             '/libraries/src/Input/Input.php',
             '/libraries/src/Input/Json.php',
+            '/media/legacy/joomla.asset.json',
+            '/media/legacy/js/jquery-noconflict.js',
+            '/media/legacy/js/jquery-noconflict.min.js',
+            '/media/legacy/js/jquery-noconflict.min.js.gz',
+            '/media/legacy/js/tabs-state.js',
+            '/media/legacy/js/tabs-state.min.js',
+            '/media/legacy/js/tabs-state.min.js.gz',
         ];
 
         $folders = [
             // From 5.x to 6.0
+            '/libraries/src/Filesystem/Support',
+            '/libraries/src/Filesystem/Streams',
+            '/libraries/src/Filesystem/Meta/language/en-GB',
+            '/libraries/src/Filesystem/Meta/language',
+            '/libraries/src/Filesystem/Meta',
+            '/libraries/src/Filesystem',
             '/libraries/src/Application/CLI/Output/Processor',
             '/libraries/src/Application/CLI/Output',
             '/libraries/src/Application/CLI',
             '/administrator/components/com_finder/helpers/indexer',
+            '/administrator/components/com_content/tmpl/featured',
         ];
 
         $status['files_checked']   = $files;