1.27.2 bugfix mt() example. Update README

Author: joey711

DESCRIPTION

@@ -1,6 +1,6 @@
 Package: phyloseq
-Version: 1.25.2
-Date: 2018-07-15
+Version: 1.27.2
+Date: 2019-02-16
 Title: Handling and analysis of high-throughput microbiome
     census data
 Description: phyloseq provides a set of classes and tools
@@ -73,4 +73,4 @@ Collate:
     'extend_DESeq2.R'
     'phylo-class.R'
     'extend_metagenomeSeq.R'
-RoxygenNote: 6.0.1
+RoxygenNote: 6.1.1

R/multtest-wrapper.R

@@ -63,7 +63,7 @@
 #' # Filter samples that don't have Enterotype
 #' x <- subset_samples(enterotype, !is.na(Enterotype))
 #' # (the taxa are at the genera level in this dataset)
-#' res = mt(x, "Enterotype", method=c("fdr", "bonferroni"), test="f", B=300)
+#' res = mt(x, "Enterotype", method="fdr", test="f", B=300)
 #' head(res, 10)
 #' ## # Not surprisingly, Prevotella and Bacteroides top the list.
 #' ## # Different test, multiple-adjusted t-test, whether samples are ent-2 or not.

README.md

@@ -4,6 +4,20 @@
 
 [![Travis-CI Build Status](https://travis-ci.org/joey711/phyloseq.svg?branch=master)](https://travis-ci.org/joey711/phyloseq)
 
+## Quick Install
+
+In R terminal:
+
+```
+if(!requireNamespace("BiocManager")){
+  install.packages("BiocManager")
+}
+BiocManager::install("phyloseq")
+```
+
+See [the phyloseq installation page](http://joey711.github.io/phyloseq/install.html)
+for further details, examples.
+
 ## Article on Improved Microbiome Analysis
 
 McMurdie and Holmes (2014)