No output while running the TB-Profiler in docker #311
Unanswered
Meeenakshipari
asked this question in
Q&A
Replies: 1 comment
-
Hi @Meeenakshipari , Did you manage to figure this one out or is it still an issue? |
Beta Was this translation helpful? Give feedback.
0 replies
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
-
I am running tb-profiler through docker , with this command ..
command :
docker run -v $PWD:$PWD quay.io/biocontainers/tb-profiler:4.3.0--pypyh5e36f6f_0 tb-profiler profile -1 $PWD/file1 -2 $PWD/file2 -p test
Sample output where it said the profiler has completed successfully
Writing outputs
Writing json file: ./results/test.results.json
Writing text file: ./results/test.results.txt
Running command:
set -u pipefail; rm ./cb84b5bf-e119-4de5-9a7e-be97479a453b*
Profiling finished sucessfully!
But no file is created
This is what it is showing but not file is generated in the current or any working directory ,
Can anyone help in understanding where I am going wrong I tried checking online for any issues with the docker command , unable to come to a conclusion ,Since I am very new to docker and tb-profiler any suggestions would be helpful
Thanks in advance
Beta Was this translation helpful? Give feedback.
All reactions