README.Rmd

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output: github_document
---

<!-- README.md is generated from README.Rmd. Please edit that file -->

```{r, include = FALSE}
knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>",
  fig.path = "man/figures/README-",
  out.width = "100%"
)
```
# Rigatoni

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Rigatoni is an experimental port, based on the EBImage package, of the grainito (https://github.com/jframi/grainito) ImageJ macro.


## Installation


Install dependencies from CRAN

``` r
install.packages("data.table")
install.packages("polylabelr")
install.packages("polyclip")
install.packages("devtools")
```
Install dependencies from github

``` r
devtools::install_github("MomX/Momocs2")
```

Install dependencies from Bioconductor
```r
if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("EBImage")
```
Then install Rigatoni from github

```r
devtools::install_github("jframi/rigatoni")
```

## Getting started

Read the [Vignette](https://jframi.github.io/rigatoni/articles/Rigatoni.html) to get started