diff --git a/.gitignore b/.gitignore
index 4b0ccc3d41..987fe261eb 100644
--- a/.gitignore
+++ b/.gitignore
@@ -27,3 +27,4 @@ megalinter-reports/
 
 .vscode/
 testResults.xml
+.mise/
\ No newline at end of file
diff --git a/e2e/generate/test_generate_bootstrap b/e2e/generate/test_generate_bootstrap
index 9bb5f1259b..a4c3b394f4 100644
--- a/e2e/generate/test_generate_bootstrap
+++ b/e2e/generate/test_generate_bootstrap
@@ -6,3 +6,8 @@ assert "./bin/mise version"
 assert "mise task add xxx -- echo 'running xxx'"
 assert "mise generate task-stubs --mise-bin ./bin/mise"
 assert "./bin/xxx" "running xxx"
+
+assert "mise generate bootstrap -l -w"
+assert_contains "./bin/mise tasks ls" "xxx"
+
+assert_not_contains "MISE_IGNORED_CONFIG_PATHS=$(pwd) ./bin/mise tasks ls" "xxx"
diff --git a/mise.lock b/mise.lock
index 812b22c6f0..0600dd0b7c 100644
--- a/mise.lock
+++ b/mise.lock
@@ -3,6 +3,7 @@ version = "1.7.5"
 backend = "aqua:rhysd/actionlint"
 
 [tools.actionlint.checksums]
+actionlint-macos-aarch64 = "sha256:84d2e2a03e3891bb55aacb09008fc750199242106d2899d8496208fe66b6137b"
 "actionlint_1.7.5_darwin_arm64.tar.gz" = "sha256:397119f9baa3fd9fe195db340b30acdaea532826e19a047a9cc9d96add7c267d"
 
 [tools.bun]
diff --git a/src/cli/generate/bootstrap.rs b/src/cli/generate/bootstrap.rs
index 32a7882dbd..e1bf3cb792 100644
--- a/src/cli/generate/bootstrap.rs
+++ b/src/cli/generate/bootstrap.rs
@@ -1,8 +1,7 @@
 use crate::config::SETTINGS;
 use crate::http::HTTP;
 use crate::ui::info;
-use crate::Result;
-use crate::{file, minisign};
+use crate::{file, minisign, Result};
 use clap::ValueHint;
 use std::path::PathBuf;
 use xx::file::display_path;
@@ -63,19 +62,27 @@ impl Bootstrap {
             .get(1)
             .unwrap()
             .as_str();
+
+        let shared_vars = r#"
+local script_dir=$( cd -- "$( dirname -- "${BASH_SOURCE[0]}" )" &> /dev/null && pwd )
+local project_dir=$( cd -- "$( dirname -- "$script_dir" )" &> /dev/null && pwd )
+export MISE_BOOTSTRAP_PROJECT_DIR="$project_dir"
+"#;
+
         let vars = if self.localize {
             // TODO: this will only work right if it is in the base directory, not an absolute path or has a subdirectory
             let localized_dir = self.localized_dir.to_string_lossy();
             format!(
                 r#"
-local script_dir=$( cd -- "$( dirname -- "${{BASH_SOURCE[0]}}" )" &> /dev/null && pwd )
-local project_dir=$( cd -- "$( dirname -- "$script_dir" )" &> /dev/null && pwd )
 local localized_dir="$project_dir/{localized_dir}"
+export MISE_BOOTSTRAP_PROJECT_DIR="$project_dir"
 export MISE_DATA_DIR="$localized_dir"
 export MISE_CONFIG_DIR="$localized_dir"
 export MISE_CACHE_DIR="$localized_dir/cache"
 export MISE_STATE_DIR="$localized_dir/state"
 export MISE_INSTALL_PATH="$localized_dir/mise-{version}"
+export MISE_TRUSTED_CONFIG_PATHS="$project_dir${{MISE_TRUSTED_CONFIG_PATHS:+:$MISE_TRUSTED_CONFIG_PATHS}}"
+export MISE_IGNORED_CONFIG_PATHS="$HOME/.config/mise${{MISE_IGNORED_CONFIG_PATHS:+:$MISE_IGNORED_CONFIG_PATHS}}"
 "#
             )
         } else {
@@ -86,16 +93,19 @@ export MISE_INSTALL_PATH="$cache_home/mise-{version}"
 "#
             )
         };
+        let shared_vars = info::indent_by(shared_vars.trim(), "    ");
         let vars = info::indent_by(vars.trim(), "    ");
         let script = format!(
             r#"
-#!/bin/sh
+#!/usr/bin/env bash
 set -eu
 
 __mise_bootstrap() {{
+{shared_vars}
 {vars}
     install() {{
 {install}
+        cd "$MISE_BOOTSTRAP_PROJECT_DIR"
     }}
     local MISE_INSTALL_HELP=0
     test -f "$MISE_INSTALL_PATH" || install