diff --git a/e2e/config/test_local_settings_trust_controls b/e2e/config/test_local_settings_trust_controls
new file mode 100644
index 0000000000..c221a8072a
--- /dev/null
+++ b/e2e/config/test_local_settings_trust_controls
@@ -0,0 +1,42 @@
+#!/usr/bin/env bash
+
+export MISE_TRUSTED_CONFIG_PATHS=""
+
+marker="$MISE_TMP_DIR/local-settings-trust-controls"
+
+cat >poc.sh <<EOF
+echo trusted_paths_hookenv > "$marker"
+EOF
+
+cat >.mise.toml <<EOF
+[settings]
+ci = "true"
+paranoid = false
+trusted_config_paths = ["/"]
+yes = true
+
+[env]
+_.source = ["./poc.sh"]
+EOF
+
+set +e
+output=$(MISE_YES=0 MISE_PARANOID=1 mise hook-env -s bash --force 2>&1)
+status=$?
+set -e
+
+if [[ $status -eq 0 ]]; then
+  echo "FAIL: expected hook-env to reject untrusted local config"
+  echo "Output: $output"
+  exit 1
+fi
+
+if [[ -f $marker ]]; then
+  echo "FAIL: local trust-control settings allowed untrusted env source execution"
+  echo "Output: $output"
+  exit 1
+fi
+
+if ! echo "$output" | grep -qi "not trusted"; then
+  echo "FAIL: expected untrusted config error, got: $output"
+  exit 1
+fi
diff --git a/settings.toml b/settings.toml
index e1066c9bf0..a0c73b0f8a 100644
--- a/settings.toml
+++ b/settings.toml
@@ -351,6 +351,7 @@ default = "false"
 description = "Set to true if running in a CI environment"
 deserialize_with = "bool_string"
 env = "CI"
+global_only = true
 hide = true
 type = "Bool"
 
@@ -1781,6 +1782,7 @@ docs = """
 Enables extra-secure behavior. See [Paranoid](/paranoid.html).
 """
 env = "MISE_PARANOID"
+global_only = true
 type = "Bool"
 
 [pin]
@@ -2629,6 +2631,7 @@ Set to `["/"]` to trust all config files, effectively disabling the trust mechan
 Paths are separated by the OS path separator when using the environment variable \
 (`:` on Unix, `;` on Windows)."""
 env = "MISE_TRUSTED_CONFIG_PATHS"
+global_only = true
 parse_env = "list_by_os_path_separator"
 rust_type = "BTreeSet<PathBuf>"
 type = "ListPath"
@@ -2753,6 +2756,7 @@ type = "String"
 [yes]
 description = "This will automatically answer yes or no to prompts. This is useful for scripting."
 env = "MISE_YES"
+global_only = true
 type = "Bool"
 
 [zig.use_community_mirrors]
diff --git a/src/config/settings.rs b/src/config/settings.rs
index d9133faebd..163867b086 100644
--- a/src/config/settings.rs
+++ b/src/config/settings.rs
@@ -1098,6 +1098,57 @@ mod tests {
         );
     }
 
+    #[test]
+    fn test_parse_settings_file_strips_non_global_trust_controls() {
+        let dir = tempfile::tempdir().unwrap();
+        let path = dir.path().join(".mise.toml");
+        std::fs::write(
+            &path,
+            r#"
+            [settings]
+            ci = "true"
+            paranoid = true
+            trusted_config_paths = ["/"]
+            yes = true
+            "#,
+        )
+        .unwrap();
+
+        let partial = Settings::parse_settings_file(&path).unwrap();
+
+        assert_eq!(partial.ci, None);
+        assert_eq!(partial.paranoid, None);
+        assert_eq!(partial.trusted_config_paths, None);
+        assert_eq!(partial.yes, None);
+    }
+
+    #[test]
+    fn test_global_config_preserves_trust_controls() {
+        let path = Path::new("/tmp/global-config.toml");
+        let mut settings = toml::from_str::<toml::Value>(
+            r#"
+            ci = "true"
+            paranoid = true
+            trusted_config_paths = ["/"]
+            yes = true
+            "#,
+        )
+        .unwrap()
+        .as_table()
+        .unwrap()
+        .clone();
+        strip_local_only_settings(&mut settings, path, true);
+        let partial = settings_partial_from_table(settings);
+
+        assert_eq!(partial.ci, Some(true));
+        assert_eq!(partial.paranoid, Some(true));
+        assert_eq!(
+            partial.trusted_config_paths,
+            Some([PathBuf::from("/")].into_iter().collect())
+        );
+        assert_eq!(partial.yes, Some(true));
+    }
+
     #[test]
     fn test_set_by_comma_empty_string() {
         let result: Result<BTreeSet<String>, _> = set_by_comma("");