packages.bib

@Manual{R-base,
  title = {R: A Language and Environment for Statistical Computing},
  author = {{R Core Team}},
  organization = {R Foundation for Statistical Computing},
  address = {Vienna, Austria},
  year = {2023},
  url = {https://www.R-project.org/},
}

@Manual{R-bookdown,
  title = {bookdown: Authoring Books and Technical Documents with R Markdown},
  author = {Yihui Xie},
  year = {2023},
  note = {R package version 0.32},
  url = {https://CRAN.R-project.org/package=bookdown},
}

@Manual{R-car,
  title = {car: Companion to Applied Regression},
  author = {John Fox and Sanford Weisberg and Brad Price},
  year = {2022},
  note = {R package version 3.1-1},
  url = {https://CRAN.R-project.org/package=car},
}

@Manual{R-carData,
  title = {carData: Companion to Applied Regression Data Sets},
  author = {John Fox and Sanford Weisberg and Brad Price},
  year = {2022},
  note = {R package version 3.0-5},
  url = {https://CRAN.R-project.org/package=carData},
}

@Manual{R-colorspace,
  title = {colorspace: A Toolbox for Manipulating and Assessing Colors and Palettes},
  author = {Ross Ihaka and Paul Murrell and Kurt Hornik and Jason C. Fisher and Reto Stauffer and Claus O. Wilke and Claire D. McWhite and Achim Zeileis},
  year = {2022},
  note = {R package version 2.0-3},
  url = {https://CRAN.R-project.org/package=colorspace},
}

@Manual{R-corrplot,
  title = {corrplot: Visualization of a Correlation Matrix},
  author = {Taiyun Wei and Viliam Simko},
  year = {2021},
  note = {R package version 0.92},
  url = {https://github.com/taiyun/corrplot},
}

@Manual{R-dplyr,
  title = {dplyr: A Grammar of Data Manipulation},
  author = {Hadley Wickham and Romain François and Lionel Henry and Kirill Müller and Davis Vaughan},
  year = {2023},
  note = {R package version 1.1.2},
  url = {https://CRAN.R-project.org/package=dplyr},
}

@Manual{R-gamlss,
  title = {gamlss: Generalised Additive Models for Location Scale and Shape},
  author = {Mikis Stasinopoulos and Bob Rigby},
  year = {2022},
  note = {R package version 5.4-10},
  url = {https://www.gamlss.com/},
}

@Manual{R-gamlss.data,
  title = {gamlss.data: Data for Generalised Additive Models for Location Scale and
Shape},
  author = {Mikis Stasinopoulos and Bob Rigby and Fernanda {De Bastiani}},
  year = {2021},
  note = {R package version 6.0-2},
  url = {https://www.gamlss.com/},
}

@Manual{R-gamlss.dist,
  title = {gamlss.dist: Distributions for Generalized Additive Models for Location Scale
and Shape},
  author = {Mikis Stasinopoulos and Robert Rigby},
  year = {2022},
  note = {R package version 6.0-5},
  url = {https://www.gamlss.com/},
}

@Manual{R-ggplot2,
  title = {ggplot2: Create Elegant Data Visualisations Using the Grammar of Graphics},
  author = {Hadley Wickham and Winston Chang and Lionel Henry and Thomas Lin Pedersen and Kohske Takahashi and Claus Wilke and Kara Woo and Hiroaki Yutani and Dewey Dunnington},
  year = {2023},
  note = {R package version 3.4.1},
  url = {https://CRAN.R-project.org/package=ggplot2},
}

@Manual{R-knitr,
  title = {knitr: A General-Purpose Package for Dynamic Report Generation in R},
  author = {Yihui Xie},
  year = {2022},
  note = {R package version 1.41},
  url = {https://yihui.org/knitr/},
}

@Manual{R-lme4,
  title = {lme4: Linear Mixed-Effects Models using Eigen and S4},
  author = {Douglas Bates and Martin Maechler and Ben Bolker and Steven Walker},
  year = {2022},
  note = {R package version 1.1-31},
  url = {https://github.com/lme4/lme4/},
}

@Manual{R-MASS,
  title = {MASS: Support Functions and Datasets for Venables and Ripley's MASS},
  author = {Brian Ripley},
  year = {2022},
  note = {R package version 7.3-58.1},
  url = {http://www.stats.ox.ac.uk/pub/MASS4/},
}

@Manual{R-Matrix,
  title = {Matrix: Sparse and Dense Matrix Classes and Methods},
  author = {Douglas Bates and Martin Maechler and Mikael Jagan},
  year = {2022},
  note = {R package version 1.5-1},
  url = {https://CRAN.R-project.org/package=Matrix},
}

@Manual{R-maxLik,
  title = {maxLik: Maximum Likelihood Estimation and Related Tools},
  author = {Ott Toomet and Arne Henningsen},
  year = {2021},
  note = {R package version 1.5-2},
  url = {https://CRAN.R-project.org/package=maxLik},
}

@Manual{R-miscTools,
  title = {miscTools: Miscellaneous Tools and Utilities},
  author = {Arne Henningsen and Ott Toomet},
  year = {2019},
  note = {R package version 0.6-26},
  url = {http://www.micEcon.org},
}

@Manual{R-mixAK,
  title = {mixAK: Multivariate Normal Mixture Models and Mixtures of Generalized
Linear Mixed Models Including Model Based Clustering},
  author = {Arnošt Komárek},
  year = {2022},
  note = {R package version 5.5},
  url = {https://www2.karlin.mff.cuni.cz/~komarek/},
}

@Manual{R-mnormt,
  title = {mnormt: The Multivariate Normal and t Distributions, and Their Truncated
Versions},
  author = {Adelchi Azzalini and Alan Genz and Alan Miller and Michael J. Wichura and G. W. Hill and Yihong Ge.},
  year = {2022},
  note = {R package version 2.1.1},
  url = {http://azzalini.stat.unipd.it/SW/Pkg-mnormt/},
}

@Manual{R-mvnmle,
  title = {mvnmle: ML Estimation for Multivariate Normal Data with Missing Values},
  author = {Kevin Gross and Douglas Bates},
  year = {2023},
  note = {R package version 0.1-11.2},
  url = {https://github.com/indenkun/mvnmle},
}

@Manual{R-mvtnorm,
  title = {mvtnorm: Multivariate Normal and t Distributions},
  author = {Alan Genz and Frank Bretz and Tetsuhisa Miwa and Xuefei Mi and Torsten Hothorn},
  year = {2021},
  note = {R package version 1.1-3},
  url = {http://mvtnorm.R-forge.R-project.org},
}

@Manual{R-nlme,
  title = {nlme: Linear and Nonlinear Mixed Effects Models},
  author = {José Pinheiro and Douglas Bates and {R Core Team}},
  year = {2022},
  note = {R package version 3.1-160},
  url = {https://svn.r-project.org/R-packages/trunk/nlme/},
}

@Manual{R-nortest,
  title = {nortest: Tests for Normality},
  author = {Juergen Gross and Uwe Ligges},
  year = {2015},
  note = {R package version 1.0-4},
  url = {https://CRAN.R-project.org/package=nortest},
}

@Manual{R-numDeriv,
  title = {numDeriv: Accurate Numerical Derivatives},
  author = {Paul Gilbert and Ravi Varadhan},
  year = {2019},
  note = {R package version 2016.8-1.1},
  url = {http://optimizer.r-forge.r-project.org/},
}

@Manual{R-plotly,
  title = {plotly: Create Interactive Web Graphics via plotly.js},
  author = {Carson Sievert and Chris Parmer and Toby Hocking and Scott Chamberlain and Karthik Ram and Marianne Corvellec and Pedro Despouy},
  year = {2022},
  note = {R package version 4.10.1},
  url = {https://CRAN.R-project.org/package=plotly},
}

@Manual{R-readxl,
  title = {readxl: Read Excel Files},
  author = {Hadley Wickham and Jennifer Bryan},
  year = {2022},
  note = {R package version 1.4.1},
  url = {https://CRAN.R-project.org/package=readxl},
}

@Manual{R-rmarkdown,
  title = {rmarkdown: Dynamic Documents for R},
  author = {JJ Allaire and Yihui Xie and Jonathan McPherson and Javier Luraschi and Kevin Ushey and Aron Atkins and Hadley Wickham and Joe Cheng and Winston Chang and Richard Iannone},
  year = {2022},
  note = {R package version 2.19},
  url = {https://CRAN.R-project.org/package=rmarkdown},
}

@Manual{R-scatterplot3d,
  title = {scatterplot3d: 3D Scatter Plot},
  author = {Uwe Ligges and Martin Maechler and Sarah Schnackenberg},
  year = {2022},
  note = {R package version 0.3-42},
  url = {https://CRAN.R-project.org/package=scatterplot3d},
}

@Manual{R-stests,
  title = {stests: Package with useful statistical tests},
  author = {Freddy Hernandez and Olga Usuga and Valentina Garcia and Jean Paul Piedrahita},
  year = {2023},
  note = {R package version 0.1.0},
  url = {https://fhernanb.github.io/stests},
}

@Manual{R-usefultools,
  title = {usefultools: Useful tools for data analysis},
  author = {Freddy Hernandez},
  year = {2023},
  note = {R package version 0.1.0},
  url = {https://github.com/fhernanb/usefultools},
}

@Book{bookdown2016,
  title = {bookdown: Authoring Books and Technical Documents with {R} Markdown},
  author = {Yihui Xie},
  publisher = {Chapman and Hall/CRC},
  address = {Boca Raton, Florida},
  year = {2016},
  note = {ISBN 978-1138700109},
  url = {https://bookdown.org/yihui/bookdown},
}

@Book{car2019,
  title = {An {R} Companion to Applied Regression},
  edition = {Third},
  author = {John Fox and Sanford Weisberg},
  year = {2019},
  publisher = {Sage},
  address = {Thousand Oaks {CA}},
  url = {https://socialsciences.mcmaster.ca/jfox/Books/Companion/},
}

@Article{colorspace2020a,
  title = {{colorspace}: A Toolbox for Manipulating and Assessing Colors and Palettes},
  author = {Achim Zeileis and Jason C. Fisher and Kurt Hornik and Ross Ihaka and Claire D. McWhite and Paul Murrell and Reto Stauffer and Claus O. Wilke},
  journal = {Journal of Statistical Software},
  year = {2020},
  volume = {96},
  number = {1},
  pages = {1--49},
  doi = {10.18637/jss.v096.i01},
}

@Article{colorspace2009a,
  title = {Escaping {RGB}land: Selecting Colors for Statistical Graphics},
  author = {Achim Zeileis and Kurt Hornik and Paul Murrell},
  journal = {Computational Statistics \& Data Analysis},
  year = {2009},
  volume = {53},
  number = {9},
  pages = {3259--3270},
  doi = {10.1016/j.csda.2008.11.033},
}

@Article{colorspace2009b,
  title = {Somewhere over the Rainbow: How to Make Effective Use of Colors in Meteorological Visualizations},
  author = {Reto Stauffer and Georg J. Mayr and Markus Dabernig and Achim Zeileis},
  journal = {Bulletin of the American Meteorological Society},
  year = {2009},
  volume = {96},
  number = {2},
  pages = {203--216},
  doi = {10.1175/BAMS-D-13-00155.1},
}

@Manual{corrplot2021,
  title = {R package 'corrplot': Visualization of a Correlation Matrix},
  author = {Taiyun Wei and Viliam Simko},
  year = {2021},
  note = {(Version 0.92)},
  url = {https://github.com/taiyun/corrplot},
}

@Article{gamlss2005,
  title = {Generalized additive models for location, scale and shape,(with discussion)},
  journal = {Applied Statistics},
  volume = {54},
  part = {3},
  pages = {507-554},
  year = {2005},
  author = {R. A. Rigby and D. M. Stasinopoulos},
}

@Book{ggplot22016,
  author = {Hadley Wickham},
  title = {ggplot2: Elegant Graphics for Data Analysis},
  publisher = {Springer-Verlag New York},
  year = {2016},
  isbn = {978-3-319-24277-4},
  url = {https://ggplot2.tidyverse.org},
}

@Book{knitr2015,
  title = {Dynamic Documents with {R} and knitr},
  author = {Yihui Xie},
  publisher = {Chapman and Hall/CRC},
  address = {Boca Raton, Florida},
  year = {2015},
  edition = {2nd},
  note = {ISBN 978-1498716963},
  url = {https://yihui.org/knitr/},
}

@InCollection{knitr2014,
  booktitle = {Implementing Reproducible Computational Research},
  editor = {Victoria Stodden and Friedrich Leisch and Roger D. Peng},
  title = {knitr: A Comprehensive Tool for Reproducible Research in {R}},
  author = {Yihui Xie},
  publisher = {Chapman and Hall/CRC},
  year = {2014},
  note = {ISBN 978-1466561595},
  url = {http://www.crcpress.com/product/isbn/9781466561595},
}

@Article{lme42015,
  title = {Fitting Linear Mixed-Effects Models Using {lme4}},
  author = {Douglas Bates and Martin M{\"a}chler and Ben Bolker and Steve Walker},
  journal = {Journal of Statistical Software},
  year = {2015},
  volume = {67},
  number = {1},
  pages = {1--48},
  doi = {10.18637/jss.v067.i01},
}

@Book{MASS2002,
  title = {Modern Applied Statistics with S},
  author = {W. N. Venables and B. D. Ripley},
  publisher = {Springer},
  edition = {Fourth},
  address = {New York},
  year = {2002},
  note = {ISBN 0-387-95457-0},
  url = {https://www.stats.ox.ac.uk/pub/MASS4/},
}

@Article{maxLik2011,
  title = {maxLik: A package for maximum likelihood estimation in {R}},
  author = {Arne Henningsen and Ott Toomet},
  journal = {Computational Statistics},
  year = {2011},
  volume = {26},
  number = {3},
  pages = {443-458},
  doi = {10.1007/s00180-010-0217-1},
  url = {http://dx.doi.org/10.1007/s00180-010-0217-1},
}

@Article{mixAK2014,
  title = {Capabilities of {R} Package {mixAK} for Clustering Based on Multivariate Continuous and Discrete Longitudinal Data},
  author = {Arno\v{s}t Kom\'arek and Lenka Kom\'arkov\'a},
  journal = {Journal of Statistical Software},
  year = {2014},
  volume = {59},
  number = {12},
  pages = {1--38},
  doi = {10.18637/jss.v059.i12},
}

@Article{mixAK2009,
  title = {A New {R} Package for {B}ayesian Estimation of Multivariate Normal Mixtures Allowing for Selection of the Number of Components and Interval-Censored Data},
  author = {Arno\v{s}t Kom\'arek},
  journal = {Computational Statistics \& Data Analysis},
  year = {2009},
  volume = {53},
  number = {12},
  pages = {3932--3947},
  doi = {10.1016/j.csda.2009.05.006},
}

@Manual{mnormt2022,
  title = {The {R} package \texttt{mnormt}: The multivariate normal and $t$ distributions (version 2.1.1)},
  author = {Adelchi Azzalini and Alan Genz},
  year = {2022},
  url = {http://azzalini.stat.unipd.it/SW/Pkg-mnormt/},
}

@Book{mvtnorm2009,
  title = {Computation of Multivariate Normal and t Probabilities},
  author = {Alan Genz and Frank Bretz},
  series = {Lecture Notes in Statistics},
  year = {2009},
  publisher = {Springer-Verlag},
  address = {Heidelberg},
  isbn = {978-3-642-01688-2},
}

@Book{nlme2000,
  title = {Mixed-Effects Models in S and S-PLUS},
  author = {José C. Pinheiro and Douglas M. Bates},
  year = {2000},
  publisher = {Springer},
  address = {New York},
  doi = {10.1007/b98882},
}

@Book{plotly2020,
  author = {Carson Sievert},
  title = {Interactive Web-Based Data Visualization with R, plotly, and shiny},
  publisher = {Chapman and Hall/CRC},
  year = {2020},
  isbn = {9781138331457},
  url = {https://plotly-r.com},
}

@Book{rmarkdown2018,
  title = {R Markdown: The Definitive Guide},
  author = {Yihui Xie and J.J. Allaire and Garrett Grolemund},
  publisher = {Chapman and Hall/CRC},
  address = {Boca Raton, Florida},
  year = {2018},
  note = {ISBN 9781138359338},
  url = {https://bookdown.org/yihui/rmarkdown},
}

@Book{rmarkdown2020,
  title = {R Markdown Cookbook},
  author = {Yihui Xie and Christophe Dervieux and Emily Riederer},
  publisher = {Chapman and Hall/CRC},
  address = {Boca Raton, Florida},
  year = {2020},
  note = {ISBN 9780367563837},
  url = {https://bookdown.org/yihui/rmarkdown-cookbook},
}

@Article{scatterplot3d2003,
  title = {Scatterplot3d - an R Package for Visualizing Multivariate Data},
  author = {Uwe Ligges and Martin M{\"a}chler},
  journal = {Journal of Statistical Software},
  year = {2003},
  pages = {1--20},
  number = {11},
  volume = {8},
  doi = {10.18637/jss.v008.i11},
}