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When I run cellxgene I get the button and everythiing but when I try to make a violin plot or any other plot I get an error. This is what I get after running cellxgene launch --host localhost --port 5005 --disable-annotations -var feature_name --verbose https://datasets.cellxgene.cziscience.com/676c47a4-bd2c-4f09-82cb-2dfcd54be04a.h5ad :
ERROR @server: Traceback (most recent call last):
File "/Users/usr/anaconda3/envs/VIP/lib/python3.8/site-packages/server/app/VIPInterface.py", line 62, in route
setTimeStamp(data)
File "/Users/usr/anaconda3/envs/VIP/lib/python3.8/site-packages/server/app/VIPInterface.py", line 1501, in setTimeStamp
Path(strF).touch()
File "/Users/usr/anaconda3/envs/VIP/lib/python3.8/pathlib.py", line 1274, in touch
fd = self._raw_open(flags, mode)
File "/Users/usr/anaconda3/envs/VIP/lib/python3.8/pathlib.py", line 1083, in _raw_open
return self._accessor.open(self, flags, mode)
FileNotFoundError: [Errno 2] No such file or directory: 'https:/datasets.cellxgene.cziscience.com/676c47a4-bd2c-4f09-82cb-2dfcd54be04a.timestamp'
Someone suggested I might not have the necessary R packages but I don't think this is it. I also ran R -q -e 'installed.packages()' to check that I have all the packages which I do. I am not sure what is causing this. I got errors installing hexbin and Cairo so installed them with the below code and still I am getting this error:
When I run cellxgene I get the button and everythiing but when I try to make a violin plot or any other plot I get an error. This is what I get after running cellxgene launch --host localhost --port 5005 --disable-annotations -var feature_name --verbose https://datasets.cellxgene.cziscience.com/676c47a4-bd2c-4f09-82cb-2dfcd54be04a.h5ad :
Someone suggested I might not have the necessary R packages but I don't think this is it. I also ran R -q -e 'installed.packages()' to check that I have all the packages which I do. I am not sure what is causing this. I got errors installing hexbin and Cairo so installed them with the below code and still I am getting this error:
See packages below:
devtools version: 2.4.5
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