Replace table by plot on tm_missing_data

.github/workflows/check.yaml

@@ -8,8 +8,6 @@ on:
       - synchronize
       - reopened
       - ready_for_review
-    branches:
-      - main
   push:
     branches:
       - main

.lintr

@@ -2,5 +2,6 @@ linters: linters_with_defaults(
   line_length_linter = line_length_linter(120),
   object_usage_linter = NULL,
   object_name_linter = object_name_linter(styles = c("snake_case", "symbols"), regexes = c(ANL = "^ANL_?[0-9A-Z_]*$", ADaM = "^r?AD[A-Z]{2,3}_?[0-9]*$")),
-  indentation_linter = NULL
+  indentation_linter = NULL,
+  pipe_consistency_linter = NULL
   )

R/tm_a_pca.R

@@ -435,7 +435,7 @@ srv_a_pca <- function(id, data, dat, plot_height, plot_width, ggplot2_args, deco
           teal.reporter::teal_card(obj),
           teal.reporter::teal_card("## Module's output(s)")
         )
-      teal.code::eval_code(obj, 'library("ggplot2");library("dplyr");library("tidyr")') # nolint: quotes
+      teal.code::eval_code(obj, "library(ggplot2);library(dplyr);library(tidyr)")
     })
     anl_merged_q <- reactive({
       req(anl_merged_input())

R/tm_a_regression.R

@@ -461,7 +461,7 @@ srv_a_regression <- function(id,
           teal.reporter::teal_card(obj),
           teal.reporter::teal_card("## Module's output(s)")
         )
-      teal.code::eval_code(obj, 'library("ggplot2");library("dplyr")') # nolint: quotes
+      teal.code::eval_code(obj, "library(ggplot2);library(dplyr)")
     })
 
     anl_merged_q <- reactive({

R/tm_data_table.R

@@ -309,7 +309,7 @@ srv_data_table <- function(id,
       teal::validate_has_data(df, min_nrow = 1L, msg = paste("data", dataname, "is empty"))
       qenv <- teal.code::eval_code(
         data(),
-        'library("dplyr");library("DT")' # nolint: quotes.
+        "library(dplyr);library(DT)"
       )
       teal.code::eval_code(
         qenv,

R/tm_g_association.R

@@ -151,8 +151,8 @@ tm_g_association <- function(label = "Association",
                              show_association = TRUE,
                              plot_height = c(600, 400, 5000),
                              plot_width = NULL,
-                             distribution_theme = c("gray", "bw", "linedraw", "light", "dark", "minimal", "classic", "void"), # nolint: line_length.
-                             association_theme = c("gray", "bw", "linedraw", "light", "dark", "minimal", "classic", "void"), # nolint: line_length.
+                             distribution_theme = c("gray", "bw", "linedraw", "light", "dark", "minimal", "classic", "void"), # nolint line_length_linter.
+                             association_theme = c("gray", "bw", "linedraw", "light", "dark", "minimal", "classic", "void"), # nolint line_length_linter.
                              pre_output = NULL,
                              post_output = NULL,
                              ggplot2_args = teal.widgets::ggplot2_args(),
@@ -345,7 +345,7 @@ srv_tm_g_association <- function(id,
           teal.reporter::teal_card(obj),
           teal.reporter::teal_card("## Module's output(s)")
         )
-      teal.code::eval_code(obj, 'library("ggplot2");library("dplyr")') # nolint: quotes
+      teal.code::eval_code(obj, "library(ggplot2);library(dplyr)")
     })
     anl_merged_q <- reactive({
       req(anl_merged_input())

R/tm_g_bivariate.R

@@ -558,9 +558,9 @@ srv_g_bivariate <- function(id,
           teal.reporter::teal_card(obj),
           teal.reporter::teal_card("## Module's output(s)")
         )
-      obj %>%
-        teal.code::eval_code('library("ggplot2");library("dplyr")') %>%
-        teal.code::eval_code(as.expression(anl_merged_input()$expr)) # don't mix char with expr in single eval_code
+      obj |>
+        teal.code::eval_code("library(ggplot2);library(dplyr)") |>
+        teal.code::eval_code(as.expression(anl_merged_input()$expr))
     })
 
     merged <- list(

R/tm_g_distribution.R

@@ -523,7 +523,7 @@ srv_distribution <- function(id,
     )
 
     qenv <- reactive(
-      teal.code::eval_code(data(), 'library("ggplot2");library("dplyr")') # nolint quotes
+      teal.code::eval_code(data(), "library(ggplot2);library(dplyr)")
     )
 
     anl_merged_q <- reactive({
@@ -663,7 +663,7 @@ srv_distribution <- function(id,
             "Group by variable must be `factor`, `character`, or `integer`"
           )
         )
-        qenv <- teal.code::eval_code(qenv, 'library("forcats")') # nolint quotes
+        qenv <- teal.code::eval_code(qenv, "library(forcats)")
         qenv <- teal.code::eval_code(
           qenv,
           substitute(
@@ -681,7 +681,7 @@ srv_distribution <- function(id,
           )
         )
 
-        qenv <- teal.code::eval_code(qenv, 'library("forcats")') # nolint quotes
+        qenv <- teal.code::eval_code(qenv, "library(forcats)")
         qenv <- teal.code::eval_code(
           qenv,
           substitute(
@@ -891,7 +891,7 @@ srv_distribution <- function(id,
         }
 
         if (length(t_dist) != 0 && main_type_var == "Density" && length(g_var) == 0 && length(s_var) == 0) {
-          qenv <- teal.code::eval_code(qenv, 'library("ggpp")') # nolint quotes
+          qenv <- teal.code::eval_code(qenv, "library(ggpp)")
           qenv <- teal.code::eval_code(
             qenv,
             substitute(
@@ -1037,7 +1037,7 @@ srv_distribution <- function(id,
         )
 
         if (length(t_dist) != 0 && length(g_var) == 0 && length(s_var) == 0) {
-          qenv <- teal.code::eval_code(qenv, 'library("ggpp")') # nolint quotes
+          qenv <- teal.code::eval_code(qenv, "library(ggpp)")
           qenv <- teal.code::eval_code(
             qenv,
             substitute(
@@ -1233,7 +1233,7 @@ srv_distribution <- function(id,
         qenv <- common_q()
 
         if (length(s_var) == 0 && length(g_var) == 0) {
-          qenv <- teal.code::eval_code(qenv, 'library("generics")') # nolint quotes
+          qenv <- teal.code::eval_code(qenv, "library(generics)")
           qenv <- teal.code::eval_code(
             qenv,
             substitute(
@@ -1247,7 +1247,7 @@ srv_distribution <- function(id,
             )
           )
         } else {
-          qenv <- teal.code::eval_code(qenv, 'library("tidyr")') # nolint quotes
+          qenv <- teal.code::eval_code(qenv, "library(tidyr)")
           qenv <- teal.code::eval_code(
             qenv,
             substitute(

R/tm_g_response.R

@@ -387,7 +387,7 @@ srv_g_response <- function(id,
     )
 
     qenv <- reactive(
-      teal.code::eval_code(data(), 'library("ggplot2");library("dplyr")') # nolint quotes
+      teal.code::eval_code(data(), "library(ggplot2);library(dplyr)")
     )
 
     anl_merged_q <- reactive({
@@ -520,7 +520,7 @@ srv_g_response <- function(id,
             resp_cl = resp_cl,
             hjust_value = if (swap_axes) "left" else "middle",
             vjust_value = if (swap_axes) "middle" else -1,
-            position_anl2_value = if (!freq) quote(position_fill(0.5)) else quote(position_stack(0.5)), # nolint: line_length.
+            position_anl2_value = if (!freq) quote(position_fill(0.5)) else quote(position_stack(0.5)), # nolint: line_length_linter.
             anl3_y = if (!freq) 1.1 else as.name("ns"),
             position_anl3_value = if (!freq) "fill" else "stack"
           )

R/tm_g_scatterplot.R

@@ -587,7 +587,7 @@ srv_g_scatterplot <- function(id,
         teal.reporter::teal_card(obj),
         teal.reporter::teal_card("## Module's output(s)")
       )
-      teal.code::eval_code(data(), 'library("ggplot2");library("dplyr")') # nolint quotes
+      teal.code::eval_code(data(), "library(ggplot2);library(dplyr)")
     })
 
     anl_merged_q <- reactive({

R/tm_g_scatterplotmatrix.R

@@ -330,7 +330,7 @@ srv_g_scatterplotmatrix <- function(id,
         teal.reporter::teal_card(obj),
         teal.reporter::teal_card("## Module's output(s)")
       )
-      qenv <- teal.code::eval_code(obj, 'library("dplyr");library("lattice")') # nolint quotes
+      qenv <- teal.code::eval_code(obj, "library(dplyr);library(lattice)")
       teal.code::eval_code(qenv, as.expression(anl_merged_input()$expr))
     })