forked from kaylode/k-anonymity
-
Notifications
You must be signed in to change notification settings - Fork 0
/
visualize.py
211 lines (171 loc) · 7.35 KB
/
visualize.py
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
from operator import sub
import os
import numpy as np
import matplotlib.pyplot as plt
from argparse import Namespace
from anonymize import Anonymizer
from models import classifier_evaluation
from datasets import get_dataset_params
from algorithms import read_tree
methods = ['mondrian', 'classic_mondrian', 'topdown'] #['cluster', 'datafly']
dataset = ['adult', 'cahousing', 'cmc', 'mgm', 'informs'] # italia
k_array = [i for i in range(10, 110, 10)]
metrics = ['ncp', 'cav', 'dm']
ml_metrics = ['knn', 'svm', 'rf']
lcolors = ['orange', 'deepskyblue', 'limegreen', 'magenta']
metric_names = [
'Normalized\nCertainty\n(lower is better)',
'Average\nEquivalence\n(lower is better)',
'Discernibility\nMetric\n(lower is better)']
ml_metric_names = [
'KNN',
'SVMs',
'RFs'
]
def sub_plot(result, dataset, methods, metrics, label_x, label_y, figname):
fig, axis = plt.subplots(nrows = len(metrics), ncols = len(dataset), figsize = (35, 30))
for row, metric in enumerate(metrics):
for col, data in enumerate(dataset):
data = data.encode('utf-8')
sub_data = result[ (data == result['data']) ]
for i, method in enumerate(methods):
method = method.encode('utf-8')
sub = sub_data[ (method == sub_data['method'])]
axis[row, col].plot(sub['k'], sub[metric], color = lcolors[i], label=sub['method'][0].decode('utf-8'))
labels_handles = {
label: handle for ax in fig.axes for handle, label in zip(*ax.get_legend_handles_labels())
}
fig.legend(
labels_handles.values(),
labels_handles.keys(),
loc="upper center",
fontsize=30,
ncol=len(labels_handles.values()))
for ax, col in zip(axis[0], label_x):
ax.set_title(col.upper(), size=20)
for ax in axis[-1]:
ax.set_xlabel('k', size=20)
for ax, row in zip(axis[:,0], label_y):
ax.set_ylabel(row, size = 30)
ax.get_yaxis().set_label_coords(-0.2, 0.5)
plt.subplots_adjust(0.075, 0.05, 0.97, 0.95, 0.2, 0.25)
plt.savefig(figname)
plt.show()
def sub_plot_ml(result, dataset, methods, models, label_x, label_y, figname):
fig, axis = plt.subplots(nrows = len(models), ncols = len(dataset), figsize = (35, 30))
for col, model in enumerate(models):
model = model.encode('utf-8')
sub_data1 = result[(model == result['model'])]
for row, data in enumerate(dataset):
data = data.encode('utf-8')
sub_data2 = sub_data1[(data == sub_data1['data'])]
for i, method in enumerate(methods):
method = method.encode('utf-8')
sub_data3 = sub_data2[(method == sub_data2['method'])]
if i == 0:
# Baseline score
axis[col, row].plot(sub_data3['k'], sub_data3["ori_f1"], '--', color = 'black', label="Baseline")
axis[col, row].plot(sub_data3['k'], sub_data3["anon_f1"], color = lcolors[i], label= sub_data3['method'][0].decode('utf-8'))
labels_handles = {
label: handle for ax in fig.axes for handle, label in zip(*ax.get_legend_handles_labels())
}
fig.legend(
labels_handles.values(),
labels_handles.keys(),
loc="upper center",
fontsize=30,
ncol=len(labels_handles.values()))
for ax, col in zip(axis[0], label_x):
ax.set_title(col.upper(), size=20)
for ax in axis[-1]:
ax.set_xlabel('k', size=20)
for ax, row in zip(axis[:,0], label_y):
ax.set_ylabel(row, size = 30)
ax.get_yaxis().set_label_coords(-0.2, 0.5)
plt.subplots_adjust(0.075, 0.05, 0.97, 0.95, 0.2, 0.25)
plt.savefig(figname)
plt.show()
def plot_metric(col, dataset, methods, metrics, label_x, label_y, figname):
result = np.genfromtxt("metric_result", names = col, dtype = None)
sub_plot(result, dataset, methods, metrics, label_x, label_y, figname)
def plot_metric_ml(col, dataset, methods, models, label_x, label_y, figname):
result = np.genfromtxt("ml_metric_result", names = col, dtype=None)
sub_plot_ml(result, dataset, methods, models, label_x, label_y, figname)
def run_anon_data():
output = open("metric_result", "w")
for data in dataset:
for method in methods:
for k in k_array:
args = Namespace()
args.method = method
args.dataset = data
args.k = k
anonymizer = Anonymizer(args)
ncp, cav_b, cav_a, dm_b, dm_a = anonymizer.anonymize()
result = f'{data} {method} {k} {ncp:.3f} {cav_a:.3f} {dm_a:.3f}'
output.write(result + '\n')
output.close()
def run_anon_data_ml():
import pandas as pd
data_path = './data'
result_path = './results'
output = open("ml_metric_result", "w")
for data in dataset:
gen_path = f'./data/{data}/hierarchies'
data_params = get_dataset_params(data)
QI_INDEX = data_params['qi_index']
IS_CAT = data_params['is_category']
HAS_HIERARCHIES = [True] * len(IS_CAT)
ori_csv = os.path.join(data_path, data, f'{data}.csv')
tmp_df = pd.read_csv(ori_csv, delimiter=';')
ATT_NAMES = list(tmp_df.columns)
ATT_TREES = read_tree(
gen_path,
data,
ATT_NAMES,
QI_INDEX,
HAS_HIERARCHIES)
train_index = os.path.join(data_path, data, f'{data}_train.txt')
val_index = os.path.join(data_path, data, f'{data}_val.txt')
for classifier_name in ml_metrics:
ori_f1 = classifier_evaluation(classifier_name, ori_csv, train_index, val_index, QI_INDEX, IS_CAT)
for method in methods:
for k in k_array:
anon_csv = os.path.join(result_path, data, method, f'{data}_anonymized_{k}.csv')
tmp_att_trees = ATT_TREES
if method == 'classic_mondrian':
tmp_att_trees = None
anon_f1 = classifier_evaluation(
classifier_name,
ori_csv,
train_index,
val_index,
anon_csv=anon_csv,
qi_index=QI_INDEX,
is_cat=IS_CAT,
att_trees=tmp_att_trees)
result = f'{data} {method} {k} {classifier_name} {ori_f1:.3f} {anon_f1:.3f}'
output.write(result + '\n')
output.close()
if __name__ == '__main__':
# Metric evaluation
# run_anon_data()
# plot_metric(
# col = ["data", "method", "k", "ncp", "cav", "dm"],
# metrics = metrics,
# dataset=dataset,
# methods=methods,
# label_x= dataset,
# label_y = metric_names,
# figname='./demo/metrics'
# )
run_anon_data_ml()
plot_metric_ml(
col = ["data", "method", "k", "model" ,"ori_f1", "anon_f1"],
dataset=dataset,
methods=methods,
models=ml_metrics,
label_x= dataset,
label_y = ml_metric_names,
figname='./demo/metrics_ml'
)