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vtk extension with vtk 9.0.3 works on 0.11.2 not on 0.12.0 (latest) #2562

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LunarLanding opened this issue Jul 22, 2021 · 4 comments
Closed

vtk extension with vtk 9.0.3 works on 0.11.2 not on 0.12.0 (latest) #2562

LunarLanding opened this issue Jul 22, 2021 · 4 comments
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v0.12.4

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@LunarLanding
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LunarLanding commented Jul 22, 2021 •
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ALL software version info

(this library, plus any other relevant software, e.g. bokeh, python, notebook, OS, browser, etc)
Panel: 0.12.0
python : 3.9.6
pyvista: 0.31.3
vtk: 9.0.3
OS: Ubuntu 18.0.4 with xvfb installed.
Browser: Firefox 90.0.2 on OS: OSX Big Sur 11.4

environment.yml

prefix: ./.conda
channels:
  - conda-forge
  - defaults
dependencies:
  - python=3.9
  - jupyterlab
  - panel=0.12.0
  - pyvista
Full environment from `conda list` with panel==0.12.0: 
# Name                    Version                   Build  Channel
_libgcc_mutex             0.1                 conda_forge    conda-forge
_openmp_mutex             4.5                       1_gnu    conda-forge
alsa-lib                  1.2.3                h516909a_0    conda-forge
anyio                     3.2.1            py39hf3d152e_0    conda-forge
appdirs                   1.4.4              pyh9f0ad1d_0    conda-forge
argon2-cffi               20.1.0           py39h3811e60_2    conda-forge
async_generator           1.10                       py_0    conda-forge
attrs                     21.2.0             pyhd8ed1ab_0    conda-forge
babel                     2.9.1              pyh44b312d_0    conda-forge
backcall                  0.2.0              pyh9f0ad1d_0    conda-forge
backports                 1.0                        py_2    conda-forge
backports.functools_lru_cache 1.6.4              pyhd8ed1ab_0    conda-forge
bleach                    3.3.1              pyhd8ed1ab_0    conda-forge
bokeh                     2.3.3            py39hf3d152e_0    conda-forge
brotlipy                  0.7.0           py39h3811e60_1001    conda-forge
bzip2                     1.0.8                h7f98852_4    conda-forge
c-ares                    1.17.1               h7f98852_1    conda-forge
ca-certificates           2021.5.30            ha878542_0    conda-forge
cached-property           1.5.2                hd8ed1ab_1    conda-forge
cached_property           1.5.2              pyha770c72_1    conda-forge
certifi                   2021.5.30        py39hf3d152e_0    conda-forge
cffi                      1.14.6           py39he32792d_0    conda-forge
cftime                    1.5.0            py39hce5d2b2_0    conda-forge
chardet                   4.0.0            py39hf3d152e_1    conda-forge
charset-normalizer        2.0.0              pyhd8ed1ab_0    conda-forge
cryptography              3.4.7            py39hbca0aa6_0    conda-forge
curl                      7.77.0               hea6ffbf_0    conda-forge
dbus                      1.13.6               h48d8840_2    conda-forge
debugpy                   1.4.0            py39he80948d_0    conda-forge
decorator                 5.0.9              pyhd8ed1ab_0    conda-forge
defusedxml                0.7.1              pyhd8ed1ab_0    conda-forge
double-conversion         3.1.5                h9c3ff4c_2    conda-forge
eigen                     3.3.9                h4bd325d_1    conda-forge
entrypoints               0.3             py39hde42818_1002    conda-forge
expat                     2.4.1                h9c3ff4c_0    conda-forge
ffmpeg                    4.3.1                hca11adc_2    conda-forge
fontconfig                2.13.1            hba837de_1005    conda-forge
freetype                  2.10.4               h0708190_1    conda-forge
gettext                   0.19.8.1          h0b5b191_1005    conda-forge
gl2ps                     1.4.2                h0708190_0    conda-forge
glew                      2.1.0                h9c3ff4c_2    conda-forge
glib                      2.68.3               h9c3ff4c_0    conda-forge
glib-tools                2.68.3               h9c3ff4c_0    conda-forge
gmp                       6.2.1                h58526e2_0    conda-forge
gnutls                    3.6.13               h85f3911_1    conda-forge
gst-plugins-base          1.18.4               hf529b03_2    conda-forge
gstreamer                 1.18.4               h76c114f_2    conda-forge
h5py                      3.3.0           nompi_py39h98ba4bc_100    conda-forge
hdf4                      4.2.15               h10796ff_3    conda-forge
hdf5                      1.10.6          nompi_h6a2412b_1114    conda-forge
icu                       68.1                 h58526e2_0    conda-forge
idna                      3.1                pyhd3deb0d_0    conda-forge
imageio                   2.9.0                      py_0    conda-forge
importlib-metadata        4.6.1            py39hf3d152e_0    conda-forge
importlib_metadata        4.6.1                hd8ed1ab_0    conda-forge
ipykernel                 6.0.3            py39hef51801_0    conda-forge
ipython                   7.25.0           py39hef51801_1    conda-forge
ipython_genutils          0.2.0                      py_1    conda-forge
jbig                      2.1               h7f98852_2003    conda-forge
jedi                      0.18.0           py39hf3d152e_2    conda-forge
jinja2                    3.0.1              pyhd8ed1ab_0    conda-forge
jpeg                      9d                   h36c2ea0_0    conda-forge
json5                     0.9.5              pyh9f0ad1d_0    conda-forge
jsoncpp                   1.9.4                h4bd325d_3    conda-forge
jsonschema                3.2.0              pyhd8ed1ab_3    conda-forge
jupyter_client            6.1.12             pyhd8ed1ab_0    conda-forge
jupyter_core              4.7.1            py39hf3d152e_0    conda-forge
jupyter_server            1.9.0              pyhd8ed1ab_0    conda-forge
jupyterlab                3.0.16             pyhd8ed1ab_0    conda-forge
jupyterlab_pygments       0.1.2              pyh9f0ad1d_0    conda-forge
jupyterlab_server         2.6.1              pyhd8ed1ab_0    conda-forge
krb5                      1.19.1               hcc1bbae_0    conda-forge
lame                      3.100             h7f98852_1001    conda-forge
lcms2                     2.12                 hddcbb42_0    conda-forge
ld_impl_linux-64          2.36.1               hea4e1c9_1    conda-forge
lerc                      2.2.1                h9c3ff4c_0    conda-forge
libblas                   3.9.0                9_openblas    conda-forge
libcblas                  3.9.0                9_openblas    conda-forge
libclang                  11.1.0          default_ha53f305_1    conda-forge
libcurl                   7.77.0               h2574ce0_0    conda-forge
libdeflate                1.7                  h7f98852_5    conda-forge
libedit                   3.1.20191231         he28a2e2_2    conda-forge
libev                     4.33                 h516909a_1    conda-forge
libevent                  2.1.10               hcdb4288_3    conda-forge
libffi                    3.3                  h58526e2_2    conda-forge
libgcc-ng                 9.3.0               h2828fa1_19    conda-forge
libgfortran-ng            9.3.0               hff62375_19    conda-forge
libgfortran5              9.3.0               hff62375_19    conda-forge
libglib                   2.68.3               h3e27bee_0    conda-forge
libglu                    9.0.0             he1b5a44_1001    conda-forge
libgomp                   9.3.0               h2828fa1_19    conda-forge
libiconv                  1.16                 h516909a_0    conda-forge
liblapack                 3.9.0                9_openblas    conda-forge
libllvm11                 11.1.0               hf817b99_2    conda-forge
libnetcdf                 4.8.0           nompi_hcd642e3_103    conda-forge
libnghttp2                1.43.0               h812cca2_0    conda-forge
libogg                    1.3.4                h7f98852_1    conda-forge
libopenblas               0.3.15          pthreads_h8fe5266_1    conda-forge
libopus                   1.3.1                h7f98852_1    conda-forge
libpng                    1.6.37               h21135ba_2    conda-forge
libpq                     13.3                 hd57d9b9_0    conda-forge
libsodium                 1.0.18               h36c2ea0_1    conda-forge
libssh2                   1.9.0                ha56f1ee_6    conda-forge
libstdcxx-ng              9.3.0               h6de172a_19    conda-forge
libtheora                 1.1.1             h7f98852_1005    conda-forge
libtiff                   4.3.0                hf544144_1    conda-forge
libuuid                   2.32.1            h7f98852_1000    conda-forge
libvorbis                 1.3.7                h9c3ff4c_0    conda-forge
libwebp-base              1.2.0                h7f98852_2    conda-forge
libxcb                    1.13              h7f98852_1003    conda-forge
libxkbcommon              1.0.3                he3ba5ed_0    conda-forge
libxml2                   2.9.12               h72842e0_0    conda-forge
libzip                    1.8.0                h4de3113_0    conda-forge
loguru                    0.5.3            py39hf3d152e_2    conda-forge
lz4-c                     1.9.3                h9c3ff4c_0    conda-forge
markdown                  3.3.4              pyhd8ed1ab_0    conda-forge
markupsafe                2.0.1            py39h3811e60_0    conda-forge
matplotlib-inline         0.1.2              pyhd8ed1ab_2    conda-forge
meshio                    4.4.6              pyhd8ed1ab_0    conda-forge
mistune                   0.8.4           py39h3811e60_1004    conda-forge
mysql-common              8.0.25               ha770c72_2    conda-forge
mysql-libs                8.0.25               hfa10184_2    conda-forge
nbclassic                 0.3.1              pyhd8ed1ab_1    conda-forge
nbclient                  0.5.3              pyhd8ed1ab_0    conda-forge
nbconvert                 6.1.0            py39hf3d152e_0    conda-forge
nbformat                  5.1.3              pyhd8ed1ab_0    conda-forge
ncurses                   6.2                  h58526e2_4    conda-forge
nest-asyncio              1.5.1              pyhd8ed1ab_0    conda-forge
netcdf4                   1.5.7           nompi_py39hc6dca20_100    conda-forge
nettle                    3.6                  he412f7d_0    conda-forge
notebook                  6.4.0              pyha770c72_0    conda-forge
nspr                      4.30                 h9c3ff4c_0    conda-forge
nss                       3.67                 hb5efdd6_0    conda-forge
numpy                     1.21.1           py39hdbf815f_0    conda-forge
olefile                   0.46               pyh9f0ad1d_1    conda-forge
openh264                  2.1.1                h780b84a_0    conda-forge
openjpeg                  2.4.0                hb52868f_1    conda-forge
openssl                   1.1.1k               h7f98852_0    conda-forge
packaging                 21.0               pyhd8ed1ab_0    conda-forge
pandoc                    2.14.1               h7f98852_0    conda-forge
pandocfilters             1.4.2                      py_1    conda-forge
panel                     0.12.0             pyhd8ed1ab_0    conda-forge
param                     1.11.1             pyh6c4a22f_0    conda-forge
parso                     0.8.2              pyhd8ed1ab_0    conda-forge
pcre                      8.45                 h9c3ff4c_0    conda-forge
pexpect                   4.8.0              pyh9f0ad1d_2    conda-forge
pickleshare               0.7.5           py39hde42818_1002    conda-forge
pillow                    8.3.1            py39ha612740_0    conda-forge
pip                       21.1.3             pyhd8ed1ab_0    conda-forge
proj                      7.2.0                h277dcde_2    conda-forge
prometheus_client         0.11.0             pyhd8ed1ab_0    conda-forge
prompt-toolkit            3.0.19             pyha770c72_0    conda-forge
pthread-stubs             0.4               h36c2ea0_1001    conda-forge
ptyprocess                0.7.0              pyhd3deb0d_0    conda-forge
pugixml                   1.11.4               h9c3ff4c_0    conda-forge
pycparser                 2.20               pyh9f0ad1d_2    conda-forge
pyct                      0.4.6                      py_0    conda-forge
pyct-core                 0.4.6                      py_0    conda-forge
pygments                  2.9.0              pyhd8ed1ab_0    conda-forge
pyopenssl                 20.0.1             pyhd8ed1ab_0    conda-forge
pyparsing                 2.4.7              pyh9f0ad1d_0    conda-forge
pyrsistent                0.17.3           py39h3811e60_2    conda-forge
pysocks                   1.7.1            py39hf3d152e_3    conda-forge
python                    3.9.6           h49503c6_1_cpython    conda-forge
python-dateutil           2.8.2              pyhd8ed1ab_0    conda-forge
python_abi                3.9                      2_cp39    conda-forge
pytz                      2021.1             pyhd8ed1ab_0    conda-forge
pyvista                   0.31.3             pyhd8ed1ab_0    conda-forge
pyviz_comms               2.1.0              pyhd8ed1ab_0    conda-forge
pyyaml                    5.4.1            py39h3811e60_0    conda-forge
pyzmq                     22.1.0           py39h37b5a0c_0    conda-forge
qt                        5.12.9               hda022c4_4    conda-forge
readline                  8.1                  h46c0cb4_0    conda-forge
requests                  2.26.0             pyhd8ed1ab_0    conda-forge
requests-unixsocket       0.2.0                      py_0    conda-forge
scooby                    0.5.7              pyhd8ed1ab_0    conda-forge
send2trash                1.7.1              pyhd8ed1ab_0    conda-forge
setuptools                49.6.0           py39hf3d152e_3    conda-forge
six                       1.16.0             pyh6c4a22f_0    conda-forge
sniffio                   1.2.0            py39hf3d152e_1    conda-forge
sqlite                    3.36.0               h9cd32fc_0    conda-forge
tbb                       2020.2               h4bd325d_4    conda-forge
tbb-devel                 2020.2               h4bd325d_4    conda-forge
terminado                 0.10.1           py39hf3d152e_0    conda-forge
testpath                  0.5.0              pyhd8ed1ab_0    conda-forge
tk                        8.6.10               h21135ba_1    conda-forge
tornado                   6.1              py39h3811e60_1    conda-forge
tqdm                      4.61.2             pyhd8ed1ab_1    conda-forge
traitlets                 5.0.5                      py_0    conda-forge
transforms3d              0.3.1                      py_0    conda-forge
typing_extensions         3.10.0.0           pyha770c72_0    conda-forge
tzdata                    2021a                he74cb21_1    conda-forge
urllib3                   1.26.6             pyhd8ed1ab_0    conda-forge
utfcpp                    3.2.1                ha770c72_0    conda-forge
vtk                       9.0.3           no_osmesa_py39h801044d_100    conda-forge
wcwidth                   0.2.5              pyh9f0ad1d_2    conda-forge
webencodings              0.5.1                      py_1    conda-forge
websocket-client          0.57.0           py39hf3d152e_4    conda-forge
wheel                     0.36.2             pyhd3deb0d_0    conda-forge
x264                      1!161.3030           h7f98852_1    conda-forge
xorg-kbproto              1.0.7             h7f98852_1002    conda-forge
xorg-libice               1.0.10               h7f98852_0    conda-forge
xorg-libsm                1.2.3             hd9c2040_1000    conda-forge
xorg-libx11               1.7.2                h7f98852_0    conda-forge
xorg-libxau               1.0.9                h7f98852_0    conda-forge
xorg-libxdmcp             1.1.3                h7f98852_0    conda-forge
xorg-libxext              1.3.4                h7f98852_1    conda-forge
xorg-libxt                1.2.1                h7f98852_2    conda-forge
xorg-xextproto            7.3.0             h7f98852_1002    conda-forge
xorg-xproto               7.0.31            h7f98852_1007    conda-forge
xz                        5.2.5                h516909a_1    conda-forge
yaml                      0.2.5                h516909a_0    conda-forge
zeromq                    4.3.4                h9c3ff4c_0    conda-forge
zipp                      3.5.0              pyhd8ed1ab_0    conda-forge
zlib                      1.2.11            h516909a_1010    conda-forge
zstd                      1.5.0                ha95c52a_0    conda-forge
With panel==0.11.3: 
# packages in environment at /storage/users/mamaral/panel_issue/.conda:
#
# Name                    Version                   Build  Channel
_libgcc_mutex             0.1                 conda_forge    conda-forge
_openmp_mutex             4.5                       1_gnu    conda-forge
alsa-lib                  1.2.3                h516909a_0    conda-forge
anyio                     3.2.1            py39hf3d152e_0    conda-forge
appdirs                   1.4.4              pyh9f0ad1d_0    conda-forge
argon2-cffi               20.1.0           py39h3811e60_2    conda-forge
async_generator           1.10                       py_0    conda-forge
attrs                     21.2.0             pyhd8ed1ab_0    conda-forge
babel                     2.9.1              pyh44b312d_0    conda-forge
backcall                  0.2.0              pyh9f0ad1d_0    conda-forge
backports                 1.0                        py_2    conda-forge
backports.functools_lru_cache 1.6.4              pyhd8ed1ab_0    conda-forge
bleach                    3.3.1              pyhd8ed1ab_0    conda-forge
bokeh                     2.3.3            py39hf3d152e_0    conda-forge
brotlipy                  0.7.0           py39h3811e60_1001    conda-forge
bzip2                     1.0.8                h7f98852_4    conda-forge
c-ares                    1.17.1               h7f98852_1    conda-forge
ca-certificates           2021.5.30            ha878542_0    conda-forge
cached-property           1.5.2                hd8ed1ab_1    conda-forge
cached_property           1.5.2              pyha770c72_1    conda-forge
certifi                   2021.5.30        py39hf3d152e_0    conda-forge
cffi                      1.14.6           py39he32792d_0    conda-forge
cftime                    1.5.0            py39hce5d2b2_0    conda-forge
chardet                   4.0.0            py39hf3d152e_1    conda-forge
charset-normalizer        2.0.0              pyhd8ed1ab_0    conda-forge
cryptography              3.4.7            py39hbca0aa6_0    conda-forge
curl                      7.77.0               hea6ffbf_0    conda-forge
dbus                      1.13.6               h48d8840_2    conda-forge
debugpy                   1.4.0            py39he80948d_0    conda-forge
decorator                 5.0.9              pyhd8ed1ab_0    conda-forge
defusedxml                0.7.1              pyhd8ed1ab_0    conda-forge
double-conversion         3.1.5                h9c3ff4c_2    conda-forge
eigen                     3.3.9                h4bd325d_1    conda-forge
entrypoints               0.3             py39hde42818_1002    conda-forge
expat                     2.4.1                h9c3ff4c_0    conda-forge
ffmpeg                    4.3.1                hca11adc_2    conda-forge
fontconfig                2.13.1            hba837de_1005    conda-forge
freetype                  2.10.4               h0708190_1    conda-forge
gettext                   0.19.8.1          h0b5b191_1005    conda-forge
gl2ps                     1.4.2                h0708190_0    conda-forge
glew                      2.1.0                h9c3ff4c_2    conda-forge
glib                      2.68.3               h9c3ff4c_0    conda-forge
glib-tools                2.68.3               h9c3ff4c_0    conda-forge
gmp                       6.2.1                h58526e2_0    conda-forge
gnutls                    3.6.13               h85f3911_1    conda-forge
gst-plugins-base          1.18.4               hf529b03_2    conda-forge
gstreamer                 1.18.4               h76c114f_2    conda-forge
h5py                      3.3.0           nompi_py39h98ba4bc_100    conda-forge
hdf4                      4.2.15               h10796ff_3    conda-forge
hdf5                      1.10.6          nompi_h6a2412b_1114    conda-forge
icu                       68.1                 h58526e2_0    conda-forge
idna                      3.1                pyhd3deb0d_0    conda-forge
imageio                   2.9.0                      py_0    conda-forge
importlib-metadata        4.6.1            py39hf3d152e_0    conda-forge
importlib_metadata        4.6.1                hd8ed1ab_0    conda-forge
ipykernel                 6.0.3            py39hef51801_0    conda-forge
ipython                   7.25.0           py39hef51801_1    conda-forge
ipython_genutils          0.2.0                      py_1    conda-forge
jbig                      2.1               h7f98852_2003    conda-forge
jedi                      0.18.0           py39hf3d152e_2    conda-forge
jinja2                    3.0.1              pyhd8ed1ab_0    conda-forge
jpeg                      9d                   h36c2ea0_0    conda-forge
json5                     0.9.5              pyh9f0ad1d_0    conda-forge
jsoncpp                   1.9.4                h4bd325d_3    conda-forge
jsonschema                3.2.0              pyhd8ed1ab_3    conda-forge
jupyter_client            6.1.12             pyhd8ed1ab_0    conda-forge
jupyter_core              4.7.1            py39hf3d152e_0    conda-forge
jupyter_server            1.9.0              pyhd8ed1ab_0    conda-forge
jupyterlab                3.0.16             pyhd8ed1ab_0    conda-forge
jupyterlab_pygments       0.1.2              pyh9f0ad1d_0    conda-forge
jupyterlab_server         2.6.1              pyhd8ed1ab_0    conda-forge
krb5                      1.19.1               hcc1bbae_0    conda-forge
lame                      3.100             h7f98852_1001    conda-forge
lcms2                     2.12                 hddcbb42_0    conda-forge
ld_impl_linux-64          2.36.1               hea4e1c9_1    conda-forge
lerc                      2.2.1                h9c3ff4c_0    conda-forge
libblas                   3.9.0                9_openblas    conda-forge
libcblas                  3.9.0                9_openblas    conda-forge
libclang                  11.1.0          default_ha53f305_1    conda-forge
libcurl                   7.77.0               h2574ce0_0    conda-forge
libdeflate                1.7                  h7f98852_5    conda-forge
libedit                   3.1.20191231         he28a2e2_2    conda-forge
libev                     4.33                 h516909a_1    conda-forge
libevent                  2.1.10               hcdb4288_3    conda-forge
libffi                    3.3                  h58526e2_2    conda-forge
libgcc-ng                 9.3.0               h2828fa1_19    conda-forge
libgfortran-ng            9.3.0               hff62375_19    conda-forge
libgfortran5              9.3.0               hff62375_19    conda-forge
libglib                   2.68.3               h3e27bee_0    conda-forge
libglu                    9.0.0             he1b5a44_1001    conda-forge
libgomp                   9.3.0               h2828fa1_19    conda-forge
libiconv                  1.16                 h516909a_0    conda-forge
liblapack                 3.9.0                9_openblas    conda-forge
libllvm11                 11.1.0               hf817b99_2    conda-forge
libnetcdf                 4.8.0           nompi_hcd642e3_103    conda-forge
libnghttp2                1.43.0               h812cca2_0    conda-forge
libogg                    1.3.4                h7f98852_1    conda-forge
libopenblas               0.3.15          pthreads_h8fe5266_1    conda-forge
libopus                   1.3.1                h7f98852_1    conda-forge
libpng                    1.6.37               h21135ba_2    conda-forge
libpq                     13.3                 hd57d9b9_0    conda-forge
libsodium                 1.0.18               h36c2ea0_1    conda-forge
libssh2                   1.9.0                ha56f1ee_6    conda-forge
libstdcxx-ng              9.3.0               h6de172a_19    conda-forge
libtheora                 1.1.1             h7f98852_1005    conda-forge
libtiff                   4.3.0                hf544144_1    conda-forge
libuuid                   2.32.1            h7f98852_1000    conda-forge
libvorbis                 1.3.7                h9c3ff4c_0    conda-forge
libwebp-base              1.2.0                h7f98852_2    conda-forge
libxcb                    1.13              h7f98852_1003    conda-forge
libxkbcommon              1.0.3                he3ba5ed_0    conda-forge
libxml2                   2.9.12               h72842e0_0    conda-forge
libzip                    1.8.0                h4de3113_0    conda-forge
loguru                    0.5.3            py39hf3d152e_2    conda-forge
lz4-c                     1.9.3                h9c3ff4c_0    conda-forge
markdown                  3.3.4              pyhd8ed1ab_0    conda-forge
markupsafe                2.0.1            py39h3811e60_0    conda-forge
matplotlib-inline         0.1.2              pyhd8ed1ab_2    conda-forge
meshio                    4.4.6              pyhd8ed1ab_0    conda-forge
mistune                   0.8.4           py39h3811e60_1004    conda-forge
mysql-common              8.0.25               ha770c72_2    conda-forge
mysql-libs                8.0.25               hfa10184_2    conda-forge
nbclassic                 0.3.1              pyhd8ed1ab_1    conda-forge
nbclient                  0.5.3              pyhd8ed1ab_0    conda-forge
nbconvert                 6.1.0            py39hf3d152e_0    conda-forge
nbformat                  5.1.3              pyhd8ed1ab_0    conda-forge
ncurses                   6.2                  h58526e2_4    conda-forge
nest-asyncio              1.5.1              pyhd8ed1ab_0    conda-forge
netcdf4                   1.5.7           nompi_py39hc6dca20_100    conda-forge
nettle                    3.6                  he412f7d_0    conda-forge
notebook                  6.4.0              pyha770c72_0    conda-forge
nspr                      4.30                 h9c3ff4c_0    conda-forge
nss                       3.67                 hb5efdd6_0    conda-forge
numpy                     1.21.1           py39hdbf815f_0    conda-forge
olefile                   0.46               pyh9f0ad1d_1    conda-forge
openh264                  2.1.1                h780b84a_0    conda-forge
openjpeg                  2.4.0                hb52868f_1    conda-forge
openssl                   1.1.1k               h7f98852_0    conda-forge
packaging                 21.0               pyhd8ed1ab_0    conda-forge
pandoc                    2.14.1               h7f98852_0    conda-forge
pandocfilters             1.4.2                      py_1    conda-forge
panel                     0.11.3             pyhd8ed1ab_0    conda-forge
param                     1.11.1             pyh6c4a22f_0    conda-forge
parso                     0.8.2              pyhd8ed1ab_0    conda-forge
pcre                      8.45                 h9c3ff4c_0    conda-forge
pexpect                   4.8.0              pyh9f0ad1d_2    conda-forge
pickleshare               0.7.5           py39hde42818_1002    conda-forge
pillow                    8.3.1            py39ha612740_0    conda-forge
pip                       21.1.3             pyhd8ed1ab_0    conda-forge
proj                      7.2.0                h277dcde_2    conda-forge
prometheus_client         0.11.0             pyhd8ed1ab_0    conda-forge
prompt-toolkit            3.0.19             pyha770c72_0    conda-forge
pthread-stubs             0.4               h36c2ea0_1001    conda-forge
ptyprocess                0.7.0              pyhd3deb0d_0    conda-forge
pugixml                   1.11.4               h9c3ff4c_0    conda-forge
pycparser                 2.20               pyh9f0ad1d_2    conda-forge
pyct                      0.4.6                      py_0    conda-forge
pyct-core                 0.4.6                      py_0    conda-forge
pygments                  2.9.0              pyhd8ed1ab_0    conda-forge
pyopenssl                 20.0.1             pyhd8ed1ab_0    conda-forge
pyparsing                 2.4.7              pyh9f0ad1d_0    conda-forge
pyrsistent                0.17.3           py39h3811e60_2    conda-forge
pysocks                   1.7.1            py39hf3d152e_3    conda-forge
python                    3.9.6           h49503c6_1_cpython    conda-forge
python-dateutil           2.8.2              pyhd8ed1ab_0    conda-forge
python_abi                3.9                      2_cp39    conda-forge
pytz                      2021.1             pyhd8ed1ab_0    conda-forge
pyvista                   0.31.3             pyhd8ed1ab_0    conda-forge
pyviz_comms               2.1.0              pyhd8ed1ab_0    conda-forge
pyyaml                    5.4.1            py39h3811e60_0    conda-forge
pyzmq                     22.1.0           py39h37b5a0c_0    conda-forge
qt                        5.12.9               hda022c4_4    conda-forge
readline                  8.1                  h46c0cb4_0    conda-forge
requests                  2.26.0             pyhd8ed1ab_0    conda-forge
requests-unixsocket       0.2.0                      py_0    conda-forge
scooby                    0.5.7              pyhd8ed1ab_0    conda-forge
send2trash                1.7.1              pyhd8ed1ab_0    conda-forge
setuptools                49.6.0           py39hf3d152e_3    conda-forge
six                       1.16.0             pyh6c4a22f_0    conda-forge
sniffio                   1.2.0            py39hf3d152e_1    conda-forge
sqlite                    3.36.0               h9cd32fc_0    conda-forge
tbb                       2020.2               h4bd325d_4    conda-forge
tbb-devel                 2020.2               h4bd325d_4    conda-forge
terminado                 0.10.1           py39hf3d152e_0    conda-forge
testpath                  0.5.0              pyhd8ed1ab_0    conda-forge
tk                        8.6.10               h21135ba_1    conda-forge
tornado                   6.1              py39h3811e60_1    conda-forge
tqdm                      4.61.2             pyhd8ed1ab_1    conda-forge
traitlets                 5.0.5                      py_0    conda-forge
transforms3d              0.3.1                      py_0    conda-forge
typing_extensions         3.10.0.0           pyha770c72_0    conda-forge
tzdata                    2021a                he74cb21_1    conda-forge
urllib3                   1.26.6             pyhd8ed1ab_0    conda-forge
utfcpp                    3.2.1                ha770c72_0    conda-forge
vtk                       9.0.3           no_osmesa_py39h801044d_100    conda-forge
wcwidth                   0.2.5              pyh9f0ad1d_2    conda-forge
webencodings              0.5.1                      py_1    conda-forge
websocket-client          0.57.0           py39hf3d152e_4    conda-forge
wheel                     0.36.2             pyhd3deb0d_0    conda-forge
x264                      1!161.3030           h7f98852_1    conda-forge
xorg-kbproto              1.0.7             h7f98852_1002    conda-forge
xorg-libice               1.0.10               h7f98852_0    conda-forge
xorg-libsm                1.2.3             hd9c2040_1000    conda-forge
xorg-libx11               1.7.2                h7f98852_0    conda-forge
xorg-libxau               1.0.9                h7f98852_0    conda-forge
xorg-libxdmcp             1.1.3                h7f98852_0    conda-forge
xorg-libxext              1.3.4                h7f98852_1    conda-forge
xorg-libxt                1.2.1                h7f98852_2    conda-forge
xorg-xextproto            7.3.0             h7f98852_1002    conda-forge
xorg-xproto               7.0.31            h7f98852_1007    conda-forge
xz                        5.2.5                h516909a_1    conda-forge
yaml                      0.2.5                h516909a_0    conda-forge
zeromq                    4.3.4                h9c3ff4c_0    conda-forge
zipp                      3.5.0              pyhd8ed1ab_0    conda-forge
zlib                      1.2.11            h516909a_1010    conda-forge
zstd                      1.5.0                ha95c52a_0    conda-forge

Description of expected behavior and the observed behavior

Should show an interactive vtk.js render.

Complete, minimal, self-contained example code that reproduces the issue

From the example on panel's documentation :

import panel as pn
import pyvista as pv
from pyvista import examples
pn.extension('vtk', sizing_mode="stretch_width")

m = examples.download_st_helens().warp_by_scalar()

# default camera position
cpos = [(567000.9232163235, 5119147.423216323, 6460.423216322832),
 (562835.0, 5114981.5, 2294.5),
 (-0.4082482904638299, -0.40824829046381844, 0.8164965809277649)]

# pyvista plotter
pl = pv.Plotter(notebook=True);
actor = pl.add_mesh(m, smooth_shading=True, lighting=True)
pl.camera_position = cpos #set camera position

# save initial camera properties
renderer = list(pl.ren_win.GetRenderers())[0]
initial_camera = renderer.GetActiveCamera()
initial_camera_pos = {"focalPoint": initial_camera.GetFocalPoint(),
                      "position": initial_camera.GetPosition(),
                      "viewUp": initial_camera.GetViewUp()}

# Panel creation using the VTK Scene created by the plotter pyvista
orientation_widget = True
enable_keybindings = True
vtkpan = pn.panel(pl.ren_win, sizing_mode='stretch_both', orientation_widget=orientation_widget,
                  enable_keybindings=enable_keybindings, height=600)
vtkpan

Stack traceback and/or browser JavaScript console output

Could not load ipywidgets support for @pyviz/jupyterlab_pyviz 366.b19bb007778a276b2ee8.js:1:11198
Starting application in workspace: "default" jlab_core.4cb3c625b5e8bf236b99.js:2:1754
Uncaught SyntaxError: missing name after . operator
    attachWidget http://localhost:3735/static/lab/jlab_core.4cb3c625b5e8bf236b99.js?v=4cb3c625b5e8bf236b99:2
    insertWidget http://localhost:3735/static/lab/jlab_core.4cb3c625b5e8bf236b99.js?v=4cb3c625b5e8bf236b99:2
    _insertCell http://localhost:3735/static/lab/jlab_core.4cb3c625b5e8bf236b99.js?v=4cb3c625b5e8bf236b99:2
    _onCellsChanged http://localhost:3735/static/lab/jlab_core.4cb3c625b5e8bf236b99.js?v=4cb3c625b5e8bf236b99:2
    c http://localhost:3735/static/lab/jlab_core.4cb3c625b5e8bf236b99.js?v=4cb3c625b5e8bf236b99:2
    _onCellsChanged http://localhost:3735/static/lab/jlab_core.4cb3c625b5e8bf236b99.js?v=4cb3c625b5e8bf236b99:2
    m http://localhost:3735/static/lab/jlab_core.4cb3c625b5e8bf236b99.js?v=4cb3c625b5e8bf236b99:2
    l http://localhost:3735/static/lab/jlab_core.4cb3c625b5e8bf236b99.js?v=4cb3c625b5e8bf236b99:2
    emit http://localhost:3735/static/lab/jlab_core.4cb3c625b5e8bf236b99.js?v=4cb3c625b5e8bf236b99:2
    _onOrderChanged http://localhost:3735/static/lab/jlab_core.4cb3c625b5e8bf236b99.js?v=4cb3c625b5e8bf236b99:2
    m http://localhost:3735/static/lab/jlab_core.4cb3c625b5e8bf236b99.js?v=4cb3c625b5e8bf236b99:2
    l http://localhost:3735/static/lab/jlab_core.4cb3c625b5e8bf236b99.js?v=4cb3c625b5e8bf236b99:2
    emit http://localhost:3735/static/lab/jlab_core.4cb3c625b5e8bf236b99.js?v=4cb3c625b5e8bf236b99:2
    push http://localhost:3735/static/lab/jlab_core.4cb3c625b5e8bf236b99.js?v=4cb3c625b5e8bf236b99:2
    pushAll http://localhost:3735/static/lab/jlab_core.4cb3c625b5e8bf236b99.js?v=4cb3c625b5e8bf236b99:2
    c http://localhost:3735/static/lab/jlab_core.4cb3c625b5e8bf236b99.js?v=4cb3c625b5e8bf236b99:2
    pushAll http://localhost:3735/static/lab/jlab_core.4cb3c625b5e8bf236b99.js?v=4cb3c625b5e8bf236b99:2
    fromJSON http://localhost:3735/static/lab/jlab_core.4cb3c625b5e8bf236b99.js?v=4cb3c625b5e8bf236b99:2
    _revert http://localhost:3735/static/lab/jlab_core.4cb3c625b5e8bf236b99.js?v=4cb3c625b5e8bf236b99:2
panel_12.0.ipynb:77:9
Starting WebSocket: ws://localhost:3735/api/kernels/ee24af60-e253-4570-a3d0-2aa0bf195b9f 2 jlab_core.4cb3c625b5e8bf236b99.js:2:844253
Starting WebSocket: ws://localhost:3735/api/kernels/ee24af60-e253-4570-a3d0-2aa0bf195b9f jlab_core.4cb3c625b5e8bf236b99.js:2:844253
Kernel: restarting (ee24af60-e253-4570-a3d0-2aa0bf195b9f) jlab_core.4cb3c625b5e8bf236b99.js:2:857673
Connection lost, reconnecting in 0 seconds. jlab_core.4cb3c625b5e8bf236b99.js:2:857230
Starting WebSocket: ws://localhost:3735/api/kernels/ee24af60-e253-4570-a3d0-2aa0bf195b9f jlab_core.4cb3c625b5e8bf236b99.js:2:844253
Bokeh: ERROR: Unable to run BokehJS code because BokehJS library is missing panel_12.0.ipynb line 2 > injectedScript:19:19
Uncaught SyntaxError: missing name after . operator
    attachWidget http://localhost:3735/static/lab/jlab_core.4cb3c625b5e8bf236b99.js?v=4cb3c625b5e8bf236b99:2
    insertWidget http://localhost:3735/static/lab/jlab_core.4cb3c625b5e8bf236b99.js?v=4cb3c625b5e8bf236b99:2
    _insertOutput http://localhost:3735/static/lab/jlab_core.4cb3c625b5e8bf236b99.js?v=4cb3c625b5e8bf236b99:2
    onModelChanged http://localhost:3735/static/lab/jlab_core.4cb3c625b5e8bf236b99.js?v=4cb3c625b5e8bf236b99:2
    m http://localhost:3735/static/lab/jlab_core.4cb3c625b5e8bf236b99.js?v=4cb3c625b5e8bf236b99:2
    l http://localhost:3735/static/lab/jlab_core.4cb3c625b5e8bf236b99.js?v=4cb3c625b5e8bf236b99:2
    emit http://localhost:3735/static/lab/jlab_core.4cb3c625b5e8bf236b99.js?v=4cb3c625b5e8bf236b99:2
    _onListChanged http://localhost:3735/static/lab/jlab_core.4cb3c625b5e8bf236b99.js?v=4cb3c625b5e8bf236b99:2
    m http://localhost:3735/static/lab/jlab_core.4cb3c625b5e8bf236b99.js?v=4cb3c625b5e8bf236b99:2
    l http://localhost:3735/static/lab/jlab_core.4cb3c625b5e8bf236b99.js?v=4cb3c625b5e8bf236b99:2
    emit http://localhost:3735/static/lab/jlab_core.4cb3c625b5e8bf236b99.js?v=4cb3c625b5e8bf236b99:2
    push http://localhost:3735/static/lab/jlab_core.4cb3c625b5e8bf236b99.js?v=4cb3c625b5e8bf236b99:2
    _add http://localhost:3735/static/lab/jlab_core.4cb3c625b5e8bf236b99.js?v=4cb3c625b5e8bf236b99:2
    add http://localhost:3735/static/lab/jlab_core.4cb3c625b5e8bf236b99.js?v=4cb3c625b5e8bf236b99:2
    _onIOPub http://localhost:3735/static/lab/jlab_core.4cb3c625b5e8bf236b99.js?v=4cb3c625b5e8bf236b99:2
    _handleIOPub http://localhost:3735/static/lab/jlab_core.4cb3c625b5e8bf236b99.js?v=4cb3c625b5e8bf236b99:2
panel_12.0.ipynb:77:9
Bokeh: ERROR: Unable to run BokehJS code because BokehJS library is missing

Screenshots or screencasts of the bug in action

image
@philippjfr philippjfr added this to the v0.12.1 milestone Jul 26, 2021
@philippjfr philippjfr modified the milestones: v0.12.1, v0.12.x Aug 10, 2021
@playertr
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I believe I was experiencing this bug, but upgrading to Panel v0.12.1 fixed it for me. With v0.11.3, A VTK-based pyvista rendering using the Panel backend would not load for me in Jupyterlab or VSCode. I don't have more details of the buggy environment, but here is my current working setup (for posterity):

bokeh                     1.4.0                    pypi_0    pypi
ipygany                   0.5.0              pyhd8ed1ab_0    conda-forge
ipykernel                 6.0.1                    pypi_0    pypi
ipython                   7.25.0                   pypi_0    pypi
ipyvtklink                0.2.1              pyhd8ed1ab_1    conda-forge
ipywidgets                7.6.3              pyhd3deb0d_0    conda-forge
jupyter                   1.0.0                    py38_7    anaconda
jupyter-client            6.2.0                    pypi_0    pypi
jupyter_bokeh             3.0.2              pyhd8ed1ab_0    conda-forge
jupyter_client            6.1.12             pyhd8ed1ab_0    conda-forge
jupyter_console           6.4.0              pyhd8ed1ab_0    conda-forge
jupyter_core              4.7.1            py38h578d9bd_0    conda-forge
jupyter_server            1.10.1             pyhd8ed1ab_0    conda-forge
jupyterlab                1.2.20                   pypi_0    pypi
jupyterlab-server         1.2.0                    pypi_0    pypi
jupyterlab_pygments       0.1.2                      py_0    anaconda
jupyterlab_server         2.6.2              pyhd8ed1ab_0    conda-forge
jupyterlab_widgets        1.0.0              pyhd8ed1ab_1    conda-forge
panel                     0.12.1                     py_0    pyviz
pyvirtualdisplay          2.2              py38h578d9bd_0    conda-forge
pyvista                   0.31.3             pyhd8ed1ab_0    conda-forge
pyviz_comms               2.1.0              pyhd8ed1ab_0    conda-forge
pywavelets                1.1.1                    pypi_0    pypi
qt                        5.12.9               hda022c4_4    conda-forge
vtk                       9.0.3           no_osmesa_py38h3850a3d_100    conda-forge

@philippjfr
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Interesting, I didn't make any changes as part of 0.12.1 that would explain it being fixed now.

@playertr
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Hmmm ... now that I try it out on an environment with 0.11.3, the Panel backend is working. There must be some other difference in my system that accounts for the change in behavior. I'll open an issue if my bug surfaces again reproducibly. Thank you!

@philippjfr philippjfr modified the milestones: v0.12.x, v0.12.4 Sep 27, 2021
@philippjfr
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philippjfr commented Sep 27, 2021 •
edited
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Should be fixed now (in Panel 0.12.4).

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