Release algV9.6 and fix unit teests

hivdb · Mar 10, 2024 · 7103598 · 7103598
1 parent 811ebfe
commit 7103598
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Showing 4 changed files with 5,978 additions and 5,985 deletions.
diff --git a/hivfacts b/hivfacts
diff --git a/sierra-tests/src/test/java/edu/stanford/hivdb/hivfacts/HIVTest.java b/sierra-tests/src/test/java/edu/stanford/hivdb/hivfacts/HIVTest.java
@@ -229,8 +229,8 @@ public void testGetDrugSynonymMapWithException() {
 	@Test
 	public void testGetDrugResistAlgorithms() {
 		assertNotNull(hiv.getDrugResistAlgorithms());
-		// 20240224, 45 algorithms
-		assertEquals(45, hiv.getDrugResistAlgorithms().size());
+		// 20240309, 46 algorithms
+		assertEquals(46, hiv.getDrugResistAlgorithms().size());
 	}
 
 	@Test

diff --git a/sierra-tests/src/test/java/edu/stanford/hivdb/viruses/VirusTest.java b/sierra-tests/src/test/java/edu/stanford/hivdb/viruses/VirusTest.java
@@ -47,13 +47,13 @@ public void testExtractMutationGenesInvaid() {
 
 	@Test
 	public void testGetLatestDrugResistAlgorithm() {
-		assertEquals("9.6a1", hiv.getLatestDrugResistAlgorithm("HIVDB").getVersion());
-		assertEquals("33", hiv.getLatestDrugResistAlgorithm("ANRS").getVersion());
+		assertEquals("9.6", hiv.getLatestDrugResistAlgorithm("HIVDB").getVersion());
+		assertEquals("34", hiv.getLatestDrugResistAlgorithm("ANRS").getVersion());
 		assertEquals("10.0", hiv.getLatestDrugResistAlgorithm("Rega").getVersion());
 	}
 
 	@Test
 	public void testGetDefaultDrugResistAlgorithm() {
-		assertEquals("9.6a1", hiv.getDefaultDrugResistAlgorithm().getVersion());
+		assertEquals("9.6", hiv.getDefaultDrugResistAlgorithm().getVersion());
 	}
 }
+4 −4		data/aapcnt/rx-all_subtype-all.csv
+8 −8		data/aapcnt/rx-all_subtype-all.json
+1,832 −0		data/algorithms/ANRS_34.xml
+36 −34		data/algorithms/HIVDB_9.6.xml
+1 −1		data/algorithms/HIVDB_latest.xml
+7 −2		data/algorithms/versions.json
+2 −1		data/algorithms/versions.yml
+9 −9		data/conditional-comments_hiv1.csv
+9 −9		data/conditional-comments_hiv1.json
+136 −136		data/patterns-hiv1/patterns-INSTI.json
+3,142 −3,142		data/patterns-hiv1/patterns-NNRTI.json
+2,282 −2,282		data/patterns-hiv1/patterns-NRTI.json