diff --git a/tables/articles.csv b/tables/articles.csv index 9e36c6ba0..c8fad047e 100644 --- a/tables/articles.csv +++ b/tables/articles.csv @@ -15,7 +15,7 @@ Choi20,10.1056/nejmc2031364,NULL,"Choi, B",2020,2021-01-20,2021-10-08 Khatamzas21,10.1101/2021.01.10.20248871,NULL,"Khatamzas, E",2021,2021-01-20,2021-10-12 Gottlieb21,10.1001/jama.2021.0202,NULL,"Gottlieb, RL",2021,2021-01-22,2022-02-09 Andreano21,10.1073/pnas.2103154118,NULL,"Andreano, E",2021,2021-01-27,2021-09-28 -Stanevich21,10.21203/rs.3.rs-750741/v1,NULL,"Stanevich, O",2021,2021-01-27,2021-10-07 +Stanevich23,10.1038/s41467-022-34033-x,NULL,"Stanevich, O",2021,2021-01-27,2023-05-04 Collier21,10.1038/s41586-021-03412-7,NULL,"Collier, DA",2021,2021-01-27,2021-06-24 Greaney21,10.1016/j.chom.2021.02.003,NULL,"Greaney, AJ",2021,2021-01-27,2021-07-14 Hu21,10.1038/s41423-021-00648-1,NULL,"Hu, J",2021,2021-01-27,2021-07-15 diff --git a/tables/articles_preprint_doi.csv b/tables/articles_preprint_doi.csv index 193c0844a..15178edb2 100644 --- a/tables/articles_preprint_doi.csv +++ b/tables/articles_preprint_doi.csv @@ -208,7 +208,7 @@ Chalkias22,10.21203/rs.3.rs-1555201 Zhang21c,10.21203/rs.3.rs-492659/v1 Yi21,10.21203/rs.3.rs-497595/v1 Focosi21b,10.21203/rs.3.rs-524959/v1 -Stanevich21,10.21203/rs.3.rs-750741 +Stanevich23,10.21203/rs.3.rs-750741 Skelly21,10.21203/rs.3.rs-226857/v2 Mlcochova21,10.21203/rs.3.rs-637724/v1 Jalkanen21,10.21203/rs.3.rs-343388/v1 diff --git a/tables/ref_invivo/stanevich21-invivo.csv b/tables/ref_invivo/stanevich21-invivo.csv deleted file mode 100644 index c718ea851..000000000 --- a/tables/ref_invivo/stanevich21-invivo.csv +++ /dev/null @@ -1,7 +0,0 @@ -ref_name,subject_name,collection_date,section,note,date_added -Stanevich21,Patient S,2020-08-17,Supplementary Data 1; Extended Data Fig 2,prolonged infection,2021-02-01 -Stanevich21,Patient S,2020-08-19,Supplementary Data 1; Extended Data Fig 2,prolonged infection,2021-10-07 -Stanevich21,Patient S,2021-01-11,Supplementary Data 1; Extended Data Fig 2,prolonged infection,2021-10-07 -Stanevich21,Patient S,2021-01-19,Supplementary Data 1; Extended Data Fig 2,prolonged infection,2021-10-07 -Stanevich21,Patient S,2021-01-22,Supplementary Data 1; Extended Data Fig 2,prolonged infection,2021-10-07 -Stanevich21,Patient S,2021-02-19,Supplementary Data 1; Extended Data Fig 2,prolonged infection,2021-10-07 diff --git a/tables/ref_invivo/stanevich23-invivo.csv b/tables/ref_invivo/stanevich23-invivo.csv new file mode 100644 index 000000000..289d1350d --- /dev/null +++ b/tables/ref_invivo/stanevich23-invivo.csv @@ -0,0 +1,7 @@ +ref_name,subject_name,collection_date,section,note,date_added +Stanevich23,Patient S,2020-08-17,Supplementary Data 1; Extended Data Fig 2,prolonged infection,2021-02-01 +Stanevich23,Patient S,2020-08-19,Supplementary Data 1; Extended Data Fig 2,prolonged infection,2021-10-07 +Stanevich23,Patient S,2021-01-11,Supplementary Data 1; Extended Data Fig 2,prolonged infection,2021-10-07 +Stanevich23,Patient S,2021-01-19,Supplementary Data 1; Extended Data Fig 2,prolonged infection,2021-10-07 +Stanevich23,Patient S,2021-01-22,Supplementary Data 1; Extended Data Fig 2,prolonged infection,2021-10-07 +Stanevich23,Patient S,2021-02-19,Supplementary Data 1; Extended Data Fig 2,prolonged infection,2021-10-07 diff --git a/tables/subject_infections/stanevich21-inf.csv b/tables/subject_infections/stanevich21-inf.csv deleted file mode 100644 index 9695d9268..000000000 --- a/tables/subject_infections/stanevich21-inf.csv +++ /dev/null @@ -1,5 +0,0 @@ -ref_name,subject_name,infection_date_cmp,infection_date,infected_var_name,location,immune_status,severity,section -Stanevich21,Patient S,=,2020-04-19,B.1.1,Russia,Medical,Severe,NULL -Stanevich21,Donor 1,<,2020-12-11,B,Russia,NULL,NULL,NULL -Stanevich21,Donor 2,<,2020-12-15,B,Russia,NULL,NULL,NULL -Stanevich21,Donor 3,<,2020-12-18,B,Russia,NULL,NULL,NULL diff --git a/tables/subject_infections/stanevich23-inf.csv b/tables/subject_infections/stanevich23-inf.csv new file mode 100644 index 000000000..e25725c21 --- /dev/null +++ b/tables/subject_infections/stanevich23-inf.csv @@ -0,0 +1,5 @@ +ref_name,subject_name,infection_date_cmp,infection_date,infected_var_name,location,immune_status,severity,section +Stanevich23,Patient S,=,2020-04-19,B.1.1,Russia,Medical,Severe,NULL +Stanevich23,Donor 1,<,2020-12-11,B,Russia,NULL,NULL,NULL +Stanevich23,Donor 2,<,2020-12-15,B,Russia,NULL,NULL,NULL +Stanevich23,Donor 3,<,2020-12-18,B,Russia,NULL,NULL,NULL diff --git a/tables/subject_isolates/stanevich21-sbjiso.csv b/tables/subject_isolates/stanevich21-sbjiso.csv deleted file mode 100644 index aaaa80cfc..000000000 --- a/tables/subject_isolates/stanevich21-sbjiso.csv +++ /dev/null @@ -1,8 +0,0 @@ -ref_name,subject_name,collection_date_cmp,collection_date,iso_name,iso_source,iso_culture,location,section -Stanevich21,Patient S,~,2020-04-19,FFPE Patient A,Pending,FALSE,Russia,NULL -Stanevich21,Patient S,=,2020-08-17,hCoV-19/Russia/SPE-RII-30579S/2020,Pending,FALSE,Russia,NULL -Stanevich21,Patient S,=,2020-08-19,hCoV-19/Russia/SPE-RII-30769S/2020,Pending,FALSE,Russia,NULL -Stanevich21,Patient S,=,2021-01-11,hCoV-19/Russia/SPE-RII-22612-1S/2021,Pending,FALSE,Russia,NULL -Stanevich21,Patient S,=,2021-01-19,hCoV-19/Russia/SPE-RII-23680S/2021,Pending,FALSE,Russia,NULL -Stanevich21,Patient S,=,2021-01-22,hCoV-19/Russia/SPE-RII-24160S/2021,Pending,FALSE,Russia,NULL -Stanevich21,Patient S,=,2021-02-19,hCoV-19/Russia/SPE-RII-27064S/2021,Pending,FALSE,Russia,NULL diff --git a/tables/subject_isolates/stanevich23-sbjiso.csv b/tables/subject_isolates/stanevich23-sbjiso.csv new file mode 100644 index 000000000..7af0f96de --- /dev/null +++ b/tables/subject_isolates/stanevich23-sbjiso.csv @@ -0,0 +1,8 @@ +ref_name,subject_name,collection_date_cmp,collection_date,iso_name,iso_source,iso_culture,location,section +Stanevich23,Patient S,~,2020-04-19,FFPE Patient A,Pending,FALSE,Russia,NULL +Stanevich23,Patient S,=,2020-08-17,hCoV-19/Russia/SPE-RII-30579S/2020,Pending,FALSE,Russia,NULL +Stanevich23,Patient S,=,2020-08-19,hCoV-19/Russia/SPE-RII-30769S/2020,Pending,FALSE,Russia,NULL +Stanevich23,Patient S,=,2021-01-11,hCoV-19/Russia/SPE-RII-22612-1S/2021,Pending,FALSE,Russia,NULL +Stanevich23,Patient S,=,2021-01-19,hCoV-19/Russia/SPE-RII-23680S/2021,Pending,FALSE,Russia,NULL +Stanevich23,Patient S,=,2021-01-22,hCoV-19/Russia/SPE-RII-24160S/2021,Pending,FALSE,Russia,NULL +Stanevich23,Patient S,=,2021-02-19,hCoV-19/Russia/SPE-RII-27064S/2021,Pending,FALSE,Russia,NULL diff --git a/tables/subject_plasma/stanevich21-plasma.csv b/tables/subject_plasma/stanevich21-plasma.csv deleted file mode 100644 index 619b296c1..000000000 --- a/tables/subject_plasma/stanevich21-plasma.csv +++ /dev/null @@ -1,4 +0,0 @@ -ref_name,subject_name,rx_name,collection_date_cmp,collection_date,location,cumulative_group,section -Stanevich21,Donor 1,Donor1_CP,<,2021-01-11,Russia,CP,NULL -Stanevich21,Donor 2,Donor2_CP,<,2021-01-15,Russia,CP,NULL -Stanevich21,Donor 3,Donor3_CP,<,2021-01-18,Russia,CP,NULL diff --git a/tables/subject_plasma/stanevich23-plasma.csv b/tables/subject_plasma/stanevich23-plasma.csv new file mode 100644 index 000000000..48f2bfd59 --- /dev/null +++ b/tables/subject_plasma/stanevich23-plasma.csv @@ -0,0 +1,4 @@ +ref_name,subject_name,rx_name,collection_date_cmp,collection_date,location,cumulative_group,section +Stanevich23,Donor 1,Donor1_CP,<,2021-01-11,Russia,CP,NULL +Stanevich23,Donor 2,Donor2_CP,<,2021-01-15,Russia,CP,NULL +Stanevich23,Donor 3,Donor3_CP,<,2021-01-18,Russia,CP,NULL diff --git a/tables/subject_treatments/stanevich21-prx.csv b/tables/subject_treatments/stanevich21-prx.csv deleted file mode 100644 index 89a882351..000000000 --- a/tables/subject_treatments/stanevich21-prx.csv +++ /dev/null @@ -1,4 +0,0 @@ -ref_name,subject_name,rx_name,start_date_cmp,start_date,end_date_cmp,end_date,dosage,dosage_unit,section -Stanevich21,Patient S,Donor1_CP,=,2021-01-11,=,2021-01-11,NULL,NULL,NULL -Stanevich21,Patient S,Donor2_CP,=,2021-01-15,=,2021-01-15,NULL,NULL,NULL -Stanevich21,Patient S,Donor3_CP,=,2021-01-18,=,2021-01-18,NULL,NULL,NULL diff --git a/tables/subject_treatments/stanevich23-prx.csv b/tables/subject_treatments/stanevich23-prx.csv new file mode 100644 index 000000000..040e95342 --- /dev/null +++ b/tables/subject_treatments/stanevich23-prx.csv @@ -0,0 +1,4 @@ +ref_name,subject_name,rx_name,start_date_cmp,start_date,end_date_cmp,end_date,dosage,dosage_unit,section +Stanevich23,Patient S,Donor1_CP,=,2021-01-11,=,2021-01-11,NULL,NULL,NULL +Stanevich23,Patient S,Donor2_CP,=,2021-01-15,=,2021-01-15,NULL,NULL,NULL +Stanevich23,Patient S,Donor3_CP,=,2021-01-18,=,2021-01-18,NULL,NULL,NULL diff --git a/tables/subjects.csv b/tables/subjects.csv index 78fbb534f..8e2561567 100644 --- a/tables/subjects.csv +++ b/tables/subjects.csv @@ -4184,10 +4184,10 @@ Stamatatos21,PT_L,Human,NULL,1 Stamatatos21,PT_M,Human,NULL,1 Stamatatos21,PT_N,Human,NULL,1 Stamatatos21,PT_O,Human,NULL,1 -Stanevich21,Donor 1,Human,NULL,1 -Stanevich21,Donor 2,Human,NULL,1 -Stanevich21,Donor 3,Human,NULL,1 -Stanevich21,Patient S,Human,1973,1 +Stanevich23,Donor 1,Human,NULL,1 +Stanevich23,Donor 2,Human,NULL,1 +Stanevich23,Donor 3,Human,NULL,1 +Stanevich23,Patient S,Human,1973,1 Stankov21,BNT_1st_dose,Human,NULL,19 Stankov21,BNT_P10,Human,NULL,1 Stankov21,BNT_P11,Human,NULL,1 diff --git a/tables/treatments.csv b/tables/treatments.csv index b9443e8ae..5bc3caf6b 100644 --- a/tables/treatments.csv +++ b/tables/treatments.csv @@ -28069,9 +28069,9 @@ Stamatatos21,Mod_10_2nd_dose Stamatatos21,BNT_11_2nd_dose Stamatatos21,BNT_12_2nd_dose Stamatatos21,BNT_13_2nd_dose -Stanevich21,Donor1_CP -Stanevich21,Donor2_CP -Stanevich21,Donor3_CP +Stanevich23,Donor1_CP +Stanevich23,Donor2_CP +Stanevich23,Donor3_CP Stankov21,CP_P48 Stankov21,CP_P49 Stankov21,CP_P50