diff --git a/tables/isolate_mutations.csv b/tables/isolate_mutations.csv index c4ca559b..ac9d0efb 100644 --- a/tables/isolate_mutations.csv +++ b/tables/isolate_mutations.csv @@ -25290,6 +25290,49 @@ XBB.1.5.10 Spike,S,764,K,NULL,NULL XBB.1.5.10 Spike,S,796,Y,NULL,NULL XBB.1.5.10 Spike,S,954,H,NULL,NULL XBB.1.5.10 Spike,S,969,K,NULL,NULL +XBB.1.5.1 Spike,S,19,I,NULL,NULL +XBB.1.5.1 Spike,S,24,S,NULL,NULL +XBB.1.5.1 Spike,S,25,del,NULL,NULL +XBB.1.5.1 Spike,S,26,del,NULL,NULL +XBB.1.5.1 Spike,S,27,del,NULL,NULL +XBB.1.5.1 Spike,S,83,A,NULL,NULL +XBB.1.5.1 Spike,S,142,D,NULL,NULL +XBB.1.5.1 Spike,S,144,del,NULL,NULL +XBB.1.5.1 Spike,S,146,Q,NULL,NULL +XBB.1.5.1 Spike,S,183,E,NULL,NULL +XBB.1.5.1 Spike,S,213,E,NULL,NULL +XBB.1.5.1 Spike,S,252,V,NULL,NULL +XBB.1.5.1 Spike,S,339,H,NULL,NULL +XBB.1.5.1 Spike,S,346,T,NULL,NULL +XBB.1.5.1 Spike,S,368,I,NULL,NULL +XBB.1.5.1 Spike,S,371,F,NULL,NULL +XBB.1.5.1 Spike,S,373,P,NULL,NULL +XBB.1.5.1 Spike,S,375,F,NULL,NULL +XBB.1.5.1 Spike,S,376,A,NULL,NULL +XBB.1.5.1 Spike,S,405,N,NULL,NULL +XBB.1.5.1 Spike,S,408,S,NULL,NULL +XBB.1.5.1 Spike,S,417,N,NULL,NULL +XBB.1.5.1 Spike,S,440,K,NULL,NULL +XBB.1.5.1 Spike,S,445,P,NULL,NULL +XBB.1.5.1 Spike,S,446,S,NULL,NULL +XBB.1.5.1 Spike,S,460,K,NULL,NULL +XBB.1.5.1 Spike,S,477,N,NULL,NULL +XBB.1.5.1 Spike,S,478,K,NULL,NULL +XBB.1.5.1 Spike,S,484,A,NULL,NULL +XBB.1.5.1 Spike,S,486,P,NULL,NULL +XBB.1.5.1 Spike,S,490,S,NULL,NULL +XBB.1.5.1 Spike,S,498,R,NULL,NULL +XBB.1.5.1 Spike,S,501,Y,NULL,NULL +XBB.1.5.1 Spike,S,505,H,NULL,NULL +XBB.1.5.1 Spike,S,573,I,NULL,NULL +XBB.1.5.1 Spike,S,614,G,NULL,NULL +XBB.1.5.1 Spike,S,655,Y,NULL,NULL +XBB.1.5.1 Spike,S,679,K,NULL,NULL +XBB.1.5.1 Spike,S,681,H,NULL,NULL +XBB.1.5.1 Spike,S,764,K,NULL,NULL +XBB.1.5.1 Spike,S,796,Y,NULL,NULL +XBB.1.5.1 Spike,S,954,H,NULL,NULL +XBB.1.5.1 Spike,S,969,K,NULL,NULL XBB.1.5 Spike:K478R+F456L+H505Y,S,19,I,NULL,NULL XBB.1.5 Spike:K478R+F456L+H505Y,S,24,S,NULL,NULL XBB.1.5 Spike:K478R+F456L+H505Y,S,25,del,NULL,NULL @@ -25808,3 +25851,242 @@ HV.1 Spike,S,764,K,NULL,NULL HV.1 Spike,S,796,Y,NULL,NULL HV.1 Spike,S,954,H,NULL,NULL HV.1 Spike,S,969,K,NULL,NULL +XBB.2.3 Spike,S,19,I,NULL,NULL +XBB.2.3 Spike,S,24,S,NULL,NULL +XBB.2.3 Spike,S,25,del,NULL,NULL +XBB.2.3 Spike,S,26,del,NULL,NULL +XBB.2.3 Spike,S,27,del,NULL,NULL +XBB.2.3 Spike,S,83,A,NULL,NULL +XBB.2.3 Spike,S,142,D,NULL,NULL +XBB.2.3 Spike,S,144,del,NULL,NULL +XBB.2.3 Spike,S,146,Q,NULL,NULL +XBB.2.3 Spike,S,183,E,NULL,NULL +XBB.2.3 Spike,S,213,E,NULL,NULL +XBB.2.3 Spike,S,253,G,NULL,NULL +XBB.2.3 Spike,S,339,H,NULL,NULL +XBB.2.3 Spike,S,346,T,NULL,NULL +XBB.2.3 Spike,S,368,I,NULL,NULL +XBB.2.3 Spike,S,371,F,NULL,NULL +XBB.2.3 Spike,S,373,P,NULL,NULL +XBB.2.3 Spike,S,375,F,NULL,NULL +XBB.2.3 Spike,S,376,A,NULL,NULL +XBB.2.3 Spike,S,405,N,NULL,NULL +XBB.2.3 Spike,S,408,S,NULL,NULL +XBB.2.3 Spike,S,417,N,NULL,NULL +XBB.2.3 Spike,S,440,K,NULL,NULL +XBB.2.3 Spike,S,445,P,NULL,NULL +XBB.2.3 Spike,S,446,S,NULL,NULL +XBB.2.3 Spike,S,460,K,NULL,NULL +XBB.2.3 Spike,S,477,N,NULL,NULL +XBB.2.3 Spike,S,478,K,NULL,NULL +XBB.2.3 Spike,S,484,A,NULL,NULL +XBB.2.3 Spike,S,486,P,NULL,NULL +XBB.2.3 Spike,S,490,S,NULL,NULL +XBB.2.3 Spike,S,498,R,NULL,NULL +XBB.2.3 Spike,S,501,Y,NULL,NULL +XBB.2.3 Spike,S,505,H,NULL,NULL +XBB.2.3 Spike,S,521,S,NULL,NULL +XBB.2.3 Spike,S,614,G,NULL,NULL +XBB.2.3 Spike,S,655,Y,NULL,NULL +XBB.2.3 Spike,S,679,K,NULL,NULL +XBB.2.3 Spike,S,681,H,NULL,NULL +XBB.2.3 Spike,S,764,K,NULL,NULL +XBB.2.3 Spike,S,796,Y,NULL,NULL +XBB.2.3 Spike,S,954,H,NULL,NULL +XBB.2.3 Spike,S,969,K,NULL,NULL +EU.1.1 Spike,S,19,I,NULL,NULL +EU.1.1 Spike,S,24,S,NULL,NULL +EU.1.1 Spike,S,25,del,NULL,NULL +EU.1.1 Spike,S,26,del,NULL,NULL +EU.1.1 Spike,S,27,del,NULL,NULL +EU.1.1 Spike,S,83,A,NULL,NULL +EU.1.1 Spike,S,142,D,NULL,NULL +EU.1.1 Spike,S,144,del,NULL,NULL +EU.1.1 Spike,S,146,Q,NULL,NULL +EU.1.1 Spike,S,183,E,NULL,NULL +EU.1.1 Spike,S,213,E,NULL,NULL +EU.1.1 Spike,S,252,V,NULL,NULL +EU.1.1 Spike,S,339,H,NULL,NULL +EU.1.1 Spike,S,346,T,NULL,NULL +EU.1.1 Spike,S,368,I,NULL,NULL +EU.1.1 Spike,S,371,F,NULL,NULL +EU.1.1 Spike,S,373,P,NULL,NULL +EU.1.1 Spike,S,375,F,NULL,NULL +EU.1.1 Spike,S,376,A,NULL,NULL +EU.1.1 Spike,S,405,N,NULL,NULL +EU.1.1 Spike,S,408,S,NULL,NULL +EU.1.1 Spike,S,410,V,NULL,NULL +EU.1.1 Spike,S,417,N,NULL,NULL +EU.1.1 Spike,S,440,K,NULL,NULL +EU.1.1 Spike,S,445,P,NULL,NULL +EU.1.1 Spike,S,446,S,NULL,NULL +EU.1.1 Spike,S,460,K,NULL,NULL +EU.1.1 Spike,S,477,N,NULL,NULL +EU.1.1 Spike,S,478,K,NULL,NULL +EU.1.1 Spike,S,484,A,NULL,NULL +EU.1.1 Spike,S,486,P,NULL,NULL +EU.1.1 Spike,S,490,S,NULL,NULL +EU.1.1 Spike,S,498,R,NULL,NULL +EU.1.1 Spike,S,501,Y,NULL,NULL +EU.1.1 Spike,S,505,H,NULL,NULL +EU.1.1 Spike,S,521,S,NULL,NULL +EU.1.1 Spike,S,614,G,NULL,NULL +EU.1.1 Spike,S,655,Y,NULL,NULL +EU.1.1 Spike,S,679,K,NULL,NULL +EU.1.1 Spike,S,681,H,NULL,NULL +EU.1.1 Spike,S,764,K,NULL,NULL +EU.1.1 Spike,S,796,Y,NULL,NULL +EU.1.1 Spike,S,954,H,NULL,NULL +EU.1.1 Spike,S,969,K,NULL,NULL +HK.3 Spike,S,19,I,NULL,NULL +HK.3 Spike,S,24,S,NULL,NULL +HK.3 Spike,S,25,del,NULL,NULL +HK.3 Spike,S,26,del,NULL,NULL +HK.3 Spike,S,27,del,NULL,NULL +HK.3 Spike,S,52,H,NULL,NULL +HK.3 Spike,S,83,A,NULL,NULL +HK.3 Spike,S,142,D,NULL,NULL +HK.3 Spike,S,144,del,NULL,NULL +HK.3 Spike,S,146,Q,NULL,NULL +HK.3 Spike,S,183,E,NULL,NULL +HK.3 Spike,S,213,E,NULL,NULL +HK.3 Spike,S,252,V,NULL,NULL +HK.3 Spike,S,339,H,NULL,NULL +HK.3 Spike,S,346,T,NULL,NULL +HK.3 Spike,S,368,I,NULL,NULL +HK.3 Spike,S,371,F,NULL,NULL +HK.3 Spike,S,373,P,NULL,NULL +HK.3 Spike,S,375,F,NULL,NULL +HK.3 Spike,S,376,A,NULL,NULL +HK.3 Spike,S,405,N,NULL,NULL +HK.3 Spike,S,408,S,NULL,NULL +HK.3 Spike,S,417,N,NULL,NULL +HK.3 Spike,S,440,K,NULL,NULL +HK.3 Spike,S,445,P,NULL,NULL +HK.3 Spike,S,446,S,NULL,NULL +HK.3 Spike,S,455,F,NULL,NULL +HK.3 Spike,S,456,L,NULL,NULL +HK.3 Spike,S,460,K,NULL,NULL +HK.3 Spike,S,477,N,NULL,NULL +HK.3 Spike,S,478,K,NULL,NULL +HK.3 Spike,S,484,A,NULL,NULL +HK.3 Spike,S,486,P,NULL,NULL +HK.3 Spike,S,490,S,NULL,NULL +HK.3 Spike,S,498,R,NULL,NULL +HK.3 Spike,S,501,Y,NULL,NULL +HK.3 Spike,S,505,H,NULL,NULL +HK.3 Spike,S,614,G,NULL,NULL +HK.3 Spike,S,655,Y,NULL,NULL +HK.3 Spike,S,679,K,NULL,NULL +HK.3 Spike,S,681,H,NULL,NULL +HK.3 Spike,S,764,K,NULL,NULL +HK.3 Spike,S,796,Y,NULL,NULL +HK.3 Spike,S,954,H,NULL,NULL +HK.3 Spike,S,969,K,NULL,NULL +JD.1.1 Spike,S,19,I,NULL,NULL +JD.1.1 Spike,S,24,S,NULL,NULL +JD.1.1 Spike,S,25,del,NULL,NULL +JD.1.1 Spike,S,26,del,NULL,NULL +JD.1.1 Spike,S,27,del,NULL,NULL +JD.1.1 Spike,S,83,A,NULL,NULL +JD.1.1 Spike,S,142,D,NULL,NULL +JD.1.1 Spike,S,144,del,NULL,NULL +JD.1.1 Spike,S,146,Q,NULL,NULL +JD.1.1 Spike,S,183,E,NULL,NULL +JD.1.1 Spike,S,213,E,NULL,NULL +JD.1.1 Spike,S,252,V,NULL,NULL +JD.1.1 Spike,S,339,H,NULL,NULL +JD.1.1 Spike,S,346,T,NULL,NULL +JD.1.1 Spike,S,368,I,NULL,NULL +JD.1.1 Spike,S,371,F,NULL,NULL +JD.1.1 Spike,S,373,P,NULL,NULL +JD.1.1 Spike,S,375,F,NULL,NULL +JD.1.1 Spike,S,376,A,NULL,NULL +JD.1.1 Spike,S,405,N,NULL,NULL +JD.1.1 Spike,S,408,S,NULL,NULL +JD.1.1 Spike,S,417,N,NULL,NULL +JD.1.1 Spike,S,440,K,NULL,NULL +JD.1.1 Spike,S,445,P,NULL,NULL +JD.1.1 Spike,S,446,S,NULL,NULL +JD.1.1 Spike,S,455,F,NULL,NULL +JD.1.1 Spike,S,456,L,NULL,NULL +JD.1.1 Spike,S,460,K,NULL,NULL +JD.1.1 Spike,S,475,V,NULL,NULL +JD.1.1 Spike,S,477,N,NULL,NULL +JD.1.1 Spike,S,478,K,NULL,NULL +JD.1.1 Spike,S,484,A,NULL,NULL +JD.1.1 Spike,S,486,P,NULL,NULL +JD.1.1 Spike,S,490,S,NULL,NULL +JD.1.1 Spike,S,498,R,NULL,NULL +JD.1.1 Spike,S,501,Y,NULL,NULL +JD.1.1 Spike,S,505,H,NULL,NULL +JD.1.1 Spike,S,614,G,NULL,NULL +JD.1.1 Spike,S,655,Y,NULL,NULL +JD.1.1 Spike,S,679,K,NULL,NULL +JD.1.1 Spike,S,681,H,NULL,NULL +JD.1.1 Spike,S,764,K,NULL,NULL +JD.1.1 Spike,S,796,Y,NULL,NULL +JD.1.1 Spike,S,954,H,NULL,NULL +JD.1.1 Spike,S,969,K,NULL,NULL +JN.1.11.1 Spike,S,19,I,NULL,NULL +JN.1.11.1 Spike,S,21,T,NULL,NULL +JN.1.11.1 Spike,S,24,S,NULL,NULL +JN.1.11.1 Spike,S,25,del,NULL,NULL +JN.1.11.1 Spike,S,26,del,NULL,NULL +JN.1.11.1 Spike,S,27,del,NULL,NULL +JN.1.11.1 Spike,S,50,L,NULL,NULL +JN.1.11.1 Spike,S,69,del,NULL,NULL +JN.1.11.1 Spike,S,70,del,NULL,NULL +JN.1.11.1 Spike,S,127,F,NULL,NULL +JN.1.11.1 Spike,S,142,D,NULL,NULL +JN.1.11.1 Spike,S,144,del,NULL,NULL +JN.1.11.1 Spike,S,157,S,NULL,NULL +JN.1.11.1 Spike,S,158,G,NULL,NULL +JN.1.11.1 Spike,S,211,I,NULL,NULL +JN.1.11.1 Spike,S,212,del,NULL,NULL +JN.1.11.1 Spike,S,213,G,NULL,NULL +JN.1.11.1 Spike,S,216,F,NULL,NULL +JN.1.11.1 Spike,S,245,N,NULL,NULL +JN.1.11.1 Spike,S,264,D,NULL,NULL +JN.1.11.1 Spike,S,332,V,NULL,NULL +JN.1.11.1 Spike,S,339,H,NULL,NULL +JN.1.11.1 Spike,S,356,T,NULL,NULL +JN.1.11.1 Spike,S,371,F,NULL,NULL +JN.1.11.1 Spike,S,373,P,NULL,NULL +JN.1.11.1 Spike,S,375,F,NULL,NULL +JN.1.11.1 Spike,S,376,A,NULL,NULL +JN.1.11.1 Spike,S,403,K,NULL,NULL +JN.1.11.1 Spike,S,405,N,NULL,NULL +JN.1.11.1 Spike,S,408,S,NULL,NULL +JN.1.11.1 Spike,S,417,N,NULL,NULL +JN.1.11.1 Spike,S,440,K,NULL,NULL +JN.1.11.1 Spike,S,445,H,NULL,NULL +JN.1.11.1 Spike,S,446,S,NULL,NULL +JN.1.11.1 Spike,S,450,D,NULL,NULL +JN.1.11.1 Spike,S,452,W,NULL,NULL +JN.1.11.1 Spike,S,455,S,NULL,NULL +JN.1.11.1 Spike,S,456,L,NULL,NULL +JN.1.11.1 Spike,S,460,K,NULL,NULL +JN.1.11.1 Spike,S,477,N,NULL,NULL +JN.1.11.1 Spike,S,478,K,NULL,NULL +JN.1.11.1 Spike,S,481,K,NULL,NULL +JN.1.11.1 Spike,S,483,del,NULL,NULL +JN.1.11.1 Spike,S,484,K,NULL,NULL +JN.1.11.1 Spike,S,486,P,NULL,NULL +JN.1.11.1 Spike,S,498,R,NULL,NULL +JN.1.11.1 Spike,S,501,Y,NULL,NULL +JN.1.11.1 Spike,S,505,H,NULL,NULL +JN.1.11.1 Spike,S,554,K,NULL,NULL +JN.1.11.1 Spike,S,570,V,NULL,NULL +JN.1.11.1 Spike,S,614,G,NULL,NULL +JN.1.11.1 Spike,S,621,S,NULL,NULL +JN.1.11.1 Spike,S,655,Y,NULL,NULL +JN.1.11.1 Spike,S,679,K,NULL,NULL +JN.1.11.1 Spike,S,681,R,NULL,NULL +JN.1.11.1 Spike,S,764,K,NULL,NULL +JN.1.11.1 Spike,S,796,Y,NULL,NULL +JN.1.11.1 Spike,S,939,F,NULL,NULL +JN.1.11.1 Spike,S,954,H,NULL,NULL +JN.1.11.1 Spike,S,969,K,NULL,NULL +JN.1.11.1 Spike,S,1104,L,NULL,NULL +JN.1.11.1 Spike,S,1143,L,NULL,NULL diff --git a/tables/isolates.csv b/tables/isolates.csv index d18caf14..996c1a9a 100644 --- a/tables/isolates.csv +++ b/tables/isolates.csv @@ -1643,6 +1643,7 @@ FL.1.5.1 Spike,Omicron/FL.1.5.1,FALSE,NULL,NULL,NULL,TRUE Omicron/BN.1 full genome,Omicron/BN.1,FALSE,NULL,NULL,NULL,TRUE BQ.1.18 Spike,Omicron/BQ.1.18,FALSE,NULL,NULL,NULL,TRUE XBB.1.5.10 Spike,Omicron/XBB.1.5.10,FALSE,NULL,NULL,NULL,TRUE +XBB.1.5.1 Spike,Omicron/XBB.1.5.1,FALSE,NULL,NULL,NULL,TRUE XBB.1.5 Spike:K478R+F456L+H505Y,Omicron/XBB.1.5/K478R/F456L/H505Y,FALSE,NULL,NULL,NULL,TRUE XBB.1.5 Spike:K478R+F456L+H505Y+R403K,Omicron/XBB.1.5/K478R/F456L/H505Y/R403K,FALSE,NULL,NULL,NULL,TRUE XBB.1.5 Spike:K478R+F456L+H505Y+R403K+K444T,Omicron/XBB.1.5/K478R/F456L/H505Y/R403K/K444T,FALSE,NULL,NULL,NULL,TRUE @@ -1653,3 +1654,8 @@ XBB.1.5 Spike:K478R+F456L+H505Y+R403K+K444T+K440N+A484P+Y453F+N405K,Omicron/XBB. BA.2.30 Spike,Omicron/BA.2.30,FALSE,NULL,NULL,NULL,TRUE HV.1 Spike,HV.1,FALSE,NULL,NULL,NULL,TRUE JN.1 Spike,JN.1,FALSE,NULL,NULL,NULL,TRUE +XBB.2.3 Spike,XBB.2.3,FALSE,NULL,NULL,NULL,TRUE +EU.1.1 Spike,EU.1.1,FALSE,NULL,NULL,NULL,TRUE +HK.3 Spike,HK.3,FALSE,NULL,NULL,NULL,TRUE +JD.1.1 Spike,JD.1.1,FALSE,NULL,NULL,NULL,TRUE +JN.1.11.1 Spike,JN.1.11.1,FALSE,NULL,NULL,NULL,TRUE diff --git a/tables/ref_isolate_pairs/fda24-pair.csv b/tables/ref_isolate_pairs/fda24-pair.csv index c329f1dc..cc7a9b05 100644 --- a/tables/ref_isolate_pairs/fda24-pair.csv +++ b/tables/ref_isolate_pairs/fda24-pair.csv @@ -1,10 +1,35 @@ ref_name,control_iso_name,iso_name -FDA24,S:614G,B.1.617.2 Spike -FDA24,S:614G,BA.1 Spike -FDA24,S:614G,BA.2 Spike -FDA24,S:614G,BA.4.1 Spike -FDA24,S:614G,XBB.1.16 Spike -FDA24,S:614G,XBB.1.5 Spike -FDA24,S:614G,EG.5.1 Spike -FDA24,S:614G,HV.1 Spike -FDA24,S:614G,JN.1 Spike +FDA24,B.1 Spike,B.1.617.2 Spike +FDA24,B.1 Spike,BA.4.1 Spike +FDA24,B.1 Spike,XBB.1.16 Spike +FDA24,B.1 Spike,XBB.1.5 Spike +FDA24,B.1 Spike,EG.5.1 Spike +FDA24,B.1 Spike,HV.1 Spike +FDA24,B.1 Spike,JN.1 Spike +FDA24,B.1 Spike,B.1.1.7 Spike +FDA24,B.1 Spike,B.1.351 Spike +FDA24,B.1 Spike,P.1 Spike +FDA24,B.1 Spike,B.1.427/9 Spike +FDA24,B.1 Spike,P.2 Spike +FDA24,B.1 Spike,B.1.526/E484K Spike +FDA24,B.1 Spike,B.1.621 Spike +FDA24,B.1 Spike,BA.1 Spike +FDA24,B.1 Spike,BA.2 Spike +FDA24,B.1 Spike,BA.4/5 Spike +FDA24,B.1 Spike,BA.4.6 Spike +FDA24,B.1 Spike,BF.7 Spike +FDA24,B.1 Spike,BQ.1 Spike +FDA24,B.1 Spike,BQ.1.1 Spike +FDA24,B.1 Spike,BA.2.75 Spike +FDA24,B.1 Spike,BN.1 Spike +FDA24,B.1 Spike,XBB Spike +FDA24,B.1 Spike,XBB.1 Spike +FDA24,B.1 Spike,XBB.1.5.10 Spike +FDA24,B.1 Spike,XBB.1.5.1 Spike +FDA24,B.1 Spike,XBB.2.3 Spike +FDA24,B.1 Spike,EU.1.1 Spike +FDA24,B.1 Spike,FL.1.5.1 Spike +FDA24,B.1 Spike,HK.3 Spike +FDA24,B.1 Spike,JD.1.1 Spike +FDA24,B.1 Spike,BA.2.86 Spike +FDA24,B.1 Spike,JN.1.11.1 Spike diff --git a/tables/rx_potency/fda24-pot.csv b/tables/rx_potency/fda24-pot.csv index 8c293c6d..26494187 100644 --- a/tables/rx_potency/fda24-pot.csv +++ b/tables/rx_potency/fda24-pot.csv @@ -1,11 +1,44 @@ ref_name,rx_name,iso_name,section,assay_name,potency_type,potency,cumulative_count,potency_upper_limit,potency_lower_limit,potency_unit,date_added -FDA24,Pemivibart,S:614G,12.4,Virus isolate,IC50,24.3,1,10000,1,ng/ml,2024-03-26 -FDA24,Pemivibart,B.1.617.2 Spike,12.4,Virus isolate,IC50,11,1,10000,1,ng/ml,2024-03-26 -FDA24,Pemivibart,BA.1 Spike,12.4,Virus isolate,IC50,14.2,1,10000,1,ng/ml,2024-03-26 -FDA24,Pemivibart,BA.2 Spike,12.4,Virus isolate,IC50,5.8,1,10000,1,ng/ml,2024-03-26 -FDA24,Pemivibart,BA.4.1 Spike,12.4,Virus isolate,IC50,25.8,1,10000,1,ng/ml,2024-03-26 -FDA24,Pemivibart,XBB.1.16 Spike,12.4,Virus isolate,IC50,118,1,10000,1,ng/ml,2024-03-26 -FDA24,Pemivibart,XBB.1.5 Spike,12.4,Virus isolate,IC50,290,1,10000,1,ng/ml,2024-03-26 -FDA24,Pemivibart,EG.5.1 Spike,12.4,Virus isolate,IC50,1445,1,10000,1,ng/ml,2024-03-26 -FDA24,Pemivibart,HV.1 Spike,12.4,Virus isolate,IC50,529.4,1,10000,1,ng/ml,2024-03-26 -FDA24,Pemivibart,JN.1 Spike,12.4,Virus isolate,IC50,63.6,1,10000,1,ng/ml,2024-03-26 +FDA24,Pemivibart,B.1 Spike,Section 12.4,Virus isolate,IC50,24.3,1,10000,1,ng/ml,2024-03-26 +FDA24,Pemivibart,B.1.617.2 Spike,Section 12.4,Virus isolate,IC50,11,1,10000,1,ng/ml,2024-03-26 +FDA24,Pemivibart,BA.1 Spike,Section 12.4,Virus isolate,IC50,14.2,1,10000,1,ng/ml,2024-03-26 +FDA24,Pemivibart,BA.2 Spike,Section 12.4,Virus isolate,IC50,5.8,1,10000,1,ng/ml,2024-03-26 +FDA24,Pemivibart,BA.4.1 Spike,Section 12.4,Virus isolate,IC50,25.8,1,10000,1,ng/ml,2024-03-26 +FDA24,Pemivibart,XBB.1.16 Spike,Section 12.4,Virus isolate,IC50,118,1,10000,1,ng/ml,2024-03-26 +FDA24,Pemivibart,XBB.1.5 Spike,Section 12.4,Virus isolate,IC50,290,1,10000,1,ng/ml,2024-03-26 +FDA24,Pemivibart,EG.5.1 Spike,Section 12.4,Virus isolate,IC50,1445,1,10000,1,ng/ml,2024-03-26 +FDA24,Pemivibart,HV.1 Spike,Section 12.4,Virus isolate,IC50,529.4,1,10000,1,ng/ml,2024-03-26 +FDA24,Pemivibart,JN.1 Spike,Section 12.4,Virus isolate,IC50,63.6,1,10000,1,ng/ml,2024-03-26 +FDA24,Pemivibart,B.1 Spike,Table 2,Pseudovirus,IC50,8.4,1,1000,1,ng/ml,2024-07-19 +FDA24,Pemivibart,B.1.1.7 Spike,Table 2,Pseudovirus,IC50,11.4,1,1000,1,ng/ml,2024-07-19 +FDA24,Pemivibart,B.1.351 Spike,Table 2,Pseudovirus,IC50,9,1,1000,1,ng/ml,2024-07-19 +FDA24,Pemivibart,P.1 Spike,Table 2,Pseudovirus,IC50,12.2,1,1000,1,ng/ml,2024-07-19 +FDA24,Pemivibart,B.1.617.2 Spike,Table 2,Pseudovirus,IC50,5.2,1,1000,1,ng/ml,2024-07-19 +FDA24,Pemivibart,B.1.427/9 Spike,Table 2,Pseudovirus,IC50,3.2,1,1000,1,ng/ml,2024-07-19 +FDA24,Pemivibart,P.2 Spike,Table 2,Pseudovirus,IC50,9.3,1,1000,1,ng/ml,2024-07-19 +FDA24,Pemivibart,B.1.526/E484K Spike,Table 2,Pseudovirus,IC50,8.6,1,1000,1,ng/ml,2024-07-19 +FDA24,Pemivibart,B.1.621 Spike,Table 2,Pseudovirus,IC50,9.5,1,1000,1,ng/ml,2024-07-19 +FDA24,Pemivibart,BA.1 Spike,Table 2,Pseudovirus,IC50,121.4,1,1000,1,ng/ml,2024-07-19 +FDA24,Pemivibart,BA.2 Spike,Table 2,Pseudovirus,IC50,44.6,1,1000,1,ng/ml,2024-07-19 +FDA24,Pemivibart,BA.4/5 Spike,Table 2,Pseudovirus,IC50,47.9,1,1000,1,ng/ml,2024-07-19 +FDA24,Pemivibart,BA.4.6 Spike,Table 2,Pseudovirus,IC50,29.2,1,1000,1,ng/ml,2024-07-19 +FDA24,Pemivibart,BF.7 Spike,Table 2,Pseudovirus,IC50,72.7,1,1000,1,ng/ml,2024-07-19 +FDA24,Pemivibart,BQ.1 Spike,Table 2,Pseudovirus,IC50,164.6,1,1000,1,ng/ml,2024-07-19 +FDA24,Pemivibart,BQ.1.1 Spike,Table 2,Pseudovirus,IC50,102.1,1,1000,1,ng/ml,2024-07-19 +FDA24,Pemivibart,BA.2.75 Spike,Table 2,Pseudovirus,IC50,1364.6,1,1000,1,ng/ml,2024-07-19 +FDA24,Pemivibart,BN.1 Spike,Table 2,Pseudovirus,IC50,2112,1,1000,1,ng/ml,2024-07-19 +FDA24,Pemivibart,XBB Spike,Table 2,Pseudovirus,IC50,152.2,1,1000,1,ng/ml,2024-07-19 +FDA24,Pemivibart,XBB.1 Spike,Table 2,Pseudovirus,IC50,121.1,1,1000,1,ng/ml,2024-07-19 +FDA24,Pemivibart,XBB.1.5 Spike,Table 2,Pseudovirus,IC50,104.3,1,1000,1,ng/ml,2024-07-19 +FDA24,Pemivibart,XBB.1.16 Spike,Table 2,Pseudovirus,IC50,77.6,1,1000,1,ng/ml,2024-07-19 +FDA24,Pemivibart,XBB.1.5.10 Spike,Table 2,Pseudovirus,IC50,108.1,1,1000,1,ng/ml,2024-07-19 +FDA24,Pemivibart,XBB.1.5.1 Spike,Table 2,Pseudovirus,IC50,80,1,1000,1,ng/ml,2024-07-19 +FDA24,Pemivibart,XBB.2.3 Spike,Table 2,Pseudovirus,IC50,87,1,1000,1,ng/ml,2024-07-19 +FDA24,Pemivibart,EU.1.1 Spike,Table 2,Pseudovirus,IC50,52.1,1,1000,1,ng/ml,2024-07-19 +FDA24,Pemivibart,FL.1.5.1 Spike,Table 2,Pseudovirus,IC50,102.1,1,1000,1,ng/ml,2024-07-19 +FDA24,Pemivibart,HV.1 Spike,Table 2,Pseudovirus,IC50,41.2,1,1000,1,ng/ml,2024-07-19 +FDA24,Pemivibart,HK.3 Spike,Table 2,Pseudovirus,IC50,72.3,1,1000,1,ng/ml,2024-07-19 +FDA24,Pemivibart,JD.1.1 Spike,Table 2,Pseudovirus,IC50,101.9,1,1000,1,ng/ml,2024-07-19 +FDA24,Pemivibart,BA.2.86 Spike,Table 2,Pseudovirus,IC50,167.7,1,1000,1,ng/ml,2024-07-19 +FDA24,Pemivibart,JN.1 Spike,Table 2,Pseudovirus,IC50,74.6,1,1000,1,ng/ml,2024-07-19 +FDA24,Pemivibart,JN.1.11.1 Spike,Table 2,Pseudovirus,IC50,288,1,1000,1,ng/ml,2024-07-19 diff --git a/tables/rx_potency/francica23b-pot.csv b/tables/rx_potency/francica23b-pot.csv index b25bf26f..c92da3e2 100644 --- a/tables/rx_potency/francica23b-pot.csv +++ b/tables/rx_potency/francica23b-pot.csv @@ -23,8 +23,8 @@ Francica23b,AZD3152,XBB Spike,Figure 3A,Pseudovirus,IC50,3.8,1,1000,1,ng/ml,2023 Francica23b,AZD3152,XBB.1 Spike,Figure 3A,Pseudovirus,IC50,3.6,1,1000,1,ng/ml,2023-11-08 Francica23b,AZD3152,XBB.1.5 Spike,Figure 3A,Pseudovirus,IC50,5.8,1,1000,1,ng/ml,2023-11-08 Francica23b,AZD3152,XBB.1.16 Spike,Figure 3A,Pseudovirus,IC50,1.3,1,1000,1,ng/ml,2023-11-08 -Francica23b,AZD3152,EG.5 Spike,Figure 3A,Pseudovirus,IC50,1000,1,1000,1,ng/ml,2023-11-08 -Francica23b,AZD3152,EG.5.1 Spike,Figure 3A,Pseudovirus,IC50,1000,1,1000,1,ng/ml,2023-11-08 +Francica23b,AZD3152,EG.5 Spike,Figure 3A,Pseudovirus,IC50,1001,1,1000,1,ng/ml,2023-11-08 +Francica23b,AZD3152,EG.5.1 Spike,Figure 3A,Pseudovirus,IC50,1001,1,1000,1,ng/ml,2023-11-08 Francica23b,AZD3152,BA.2.86 Spike,Figure 3A,Pseudovirus,IC50,2.8,1,10000,1,ng/ml,2023-11-08 Francica23b,AZD3152_3B,S:614G,Figure 3B,Pseudovirus,IC50,2.31,1,10000,1,ng/ml,2023-11-08 Francica23b,AZD3152_3B,S:456L+614G,Figure 3B,Pseudovirus,IC50,4.03,1,10000,1,ng/ml,2023-11-08 diff --git a/tables/variants.csv b/tables/variants.csv index 9f81287f..84356821 100644 --- a/tables/variants.csv +++ b/tables/variants.csv @@ -492,3 +492,8 @@ HV.1,FALSE,TRUE JN.1,FALSE,TRUE Omicron/BA.2.30,FALSE,TRUE KP.2,FALSE,TRUE +XBB.2.3,FALSE,FALSE +EU.1.1,FALSE,FALSE +HK.3,FALSE,FALSE +JD.1.1,FALSE,FALSE +JN.1.11.1,FALSE,FALSE