change some doxygen defaults

Author: jcw

.gitignore

@@ -1 +1,3 @@
-.DS_Store
+.DS_Store
+*.esproj
+/html

Doxyfile

@@ -26,7 +26,7 @@ DOXYFILE_ENCODING      = UTF-8
 # identify the project. Note that if you do not use Doxywizard you need
 # to put quotes around the project name if it contains spaces.
 
-PROJECT_NAME           = "Jeelib"
+PROJECT_NAME           = "JeeLib"
 
 # The PROJECT_NUMBER tag can be used to enter a project or revision number.
 # This could be handy for archiving the generated documentation or
@@ -38,7 +38,7 @@ PROJECT_NUMBER         =
 # for a project that appears at the top of each page and should give viewer
 # a quick idea about the purpose of the project. Keep the description short.
 
-PROJECT_BRIEF          = "An easy interface to the port headers, the RF12 driver library, timers, low-power code, and more"
+PROJECT_BRIEF          = "An easy interface to the port headers, the RF12 driver library, timers, low-power code, and more."
 
 # With the PROJECT_LOGO tag one can specify an logo or icon that is
 # included in the documentation. The maximum height of the logo should not
@@ -238,7 +238,7 @@ OPTIMIZE_OUTPUT_VHDL   = NO
 # (default is Fortran), use: inc=Fortran f=C. Note that for custom extensions
 # you also need to set FILE_PATTERNS otherwise the files are not read by doxygen.
 
-EXTENSION_MAPPING      =
+EXTENSION_MAPPING      = Markdown=md
 
 # If MARKDOWN_SUPPORT is enabled (the default) then doxygen pre-processes all
 # comments according to the Markdown format, which allows for more readable
@@ -355,27 +355,27 @@ LOOKUP_CACHE_SIZE      = 0
 # Private class members and static file members will be hidden unless
 # the EXTRACT_PRIVATE and EXTRACT_STATIC tags are set to YES
 
-EXTRACT_ALL            = YES
+EXTRACT_ALL            = NO
 
 # If the EXTRACT_PRIVATE tag is set to YES all private members of a class
 # will be included in the documentation.
 
-EXTRACT_PRIVATE        = YES
+EXTRACT_PRIVATE        = NO
 
 # If the EXTRACT_PACKAGE tag is set to YES all members with package or internal scope will be included in the documentation.
 
-EXTRACT_PACKAGE        = YES
+EXTRACT_PACKAGE        = NO
 
 # If the EXTRACT_STATIC tag is set to YES all static members of a file
 # will be included in the documentation.
 
-EXTRACT_STATIC         = YES
+EXTRACT_STATIC         = NO
 
 # If the EXTRACT_LOCAL_CLASSES tag is set to YES classes (and structs)
 # defined locally in source files will be included in the documentation.
 # If set to NO only classes defined in header files are included.
 
-EXTRACT_LOCAL_CLASSES  = YES
+EXTRACT_LOCAL_CLASSES  = NO
 
 # This flag is only useful for Objective-C code. When set to YES local
 # methods, which are defined in the implementation section but not in
@@ -608,7 +608,7 @@ CITE_BIB_FILES         =
 # The QUIET tag can be used to turn on/off the messages that are generated
 # by doxygen. Possible values are YES and NO. If left blank NO is used.
 
-QUIET                  = NO
+QUIET                  = YES
 
 # The WARNINGS tag can be used to turn on/off the warning messages that are
 # generated by doxygen. Possible values are YES and NO. If left blank
@@ -620,7 +620,7 @@ WARNINGS               = YES
 # for undocumented members. If EXTRACT_ALL is set to YES then this flag will
 # automatically be disabled.
 
-WARN_IF_UNDOCUMENTED   = YES
+WARN_IF_UNDOCUMENTED   = NO
 
 # If WARN_IF_DOC_ERROR is set to YES, doxygen will generate warnings for
 # potential errors in the documentation, such as not documenting some
@@ -661,7 +661,7 @@ WARN_LOGFILE           =
 # directories like "/usr/src/myproject". Separate the files or directories
 # with spaces.
 
-INPUT                  =
+INPUT                  = 
 
 # This tag can be used to specify the character encoding of the source files
 # that doxygen parses. Internally doxygen uses the UTF-8 encoding, which is
@@ -679,7 +679,7 @@ INPUT_ENCODING         = UTF-8
 # *.hxx *.hpp *.h++ *.idl *.odl *.cs *.php *.php3 *.inc *.m *.mm *.dox *.py
 # *.f90 *.f *.for *.vhd *.vhdl
 
-FILE_PATTERNS          = *.c *.cc *.cxx *.cpp *.c++ *.d *.java *.ii *.ixx *.ipp *.i++ *.inl *.h *.hh *.hxx *.hpp *.h++ *.idl *.odl *.cs *.php *.php3 *.inc *.m *.mm *.dox *.py *.f90 *.f *.for *.vhd *.vhdl *.ino
+FILE_PATTERNS          = *.c *.cc *.cxx *.cpp *.c++ *.d *.java *.ii *.ixx *.ipp *.i++ *.inl *.h *.hh *.hxx *.hpp *.h++ *.idl *.odl *.cs *.php *.php3 *.inc *.m *.md *.mm *.dox *.py *.f90 *.f *.for *.vhd *.vhdl *.ino
 
 # The RECURSIVE tag can be used to turn specify whether or not subdirectories
 # should be searched for input files as well. Possible values are YES and NO.
@@ -793,7 +793,7 @@ SOURCE_BROWSER         = NO
 # Setting the INLINE_SOURCES tag to YES will include the body
 # of functions and classes directly in the documentation.
 
-INLINE_SOURCES         = YES
+INLINE_SOURCES         = NO
 
 # Setting the STRIP_CODE_COMMENTS tag to YES (the default) will instruct
 # doxygen to hide any special comment blocks from generated source code
@@ -905,7 +905,7 @@ HTML_FOOTER            =
 # the style sheet file to the HTML output directory, so don't put your own
 # style sheet in the HTML output directory as well, or it will be erased!
 
-HTML_STYLESHEET        =
+HTML_STYLESHEET        = Doxygen.css
 
 # The HTML_EXTRA_FILES tag can be used to specify one or more extra images or
 # other source files which should be copied to the HTML output directory. Note
@@ -1118,7 +1118,7 @@ ECLIPSE_DOC_ID         = org.doxygen.Project
 # navigation tree you can set this option to NO if you already set
 # GENERATE_TREEVIEW to YES.
 
-DISABLE_INDEX          = NO
+DISABLE_INDEX          = YES
 
 # The GENERATE_TREEVIEW tag is used to specify whether a tree-like index
 # structure should be generated to display hierarchical information.
@@ -1130,7 +1130,7 @@ DISABLE_INDEX          = NO
 # Since the tree basically has the same information as the tab index you
 # could consider to set DISABLE_INDEX to NO when enabling this option.
 
-GENERATE_TREEVIEW      = NO
+GENERATE_TREEVIEW      = YES
 
 # The ENUM_VALUES_PER_LINE tag can be used to set the number of enum values
 # (range [0,1..20]) that doxygen will group on one line in the generated HTML
@@ -1224,7 +1224,7 @@ SERVER_BASED_SEARCH    = NO
 # If the GENERATE_LATEX tag is set to YES (the default) Doxygen will
 # generate Latex output.
 
-GENERATE_LATEX         = YES
+GENERATE_LATEX         = NO
 
 # The LATEX_OUTPUT tag is used to specify where the LaTeX docs will be put.
 # If a relative path is entered the value of OUTPUT_DIRECTORY will be