NAMESPACE

# Generated by roxygen2: do not edit by hand

export(DNAbin2index)
export(aliscore)
export(assembleDataNode)
export(assembleDistributionNode)
export(assembleInitNode)
export(assembleLoggers)
export(assembleStateNode)
export(assembleTreeNode)
export(beastLog)
export(blastn)
export(code.simple.gaps)
export(collapseUnsupportedEdges)
export(combMyTree)
export(del.miss)
export(deleteEmptyCells)
export(deleteGaps)
export(descendants)
export(eoi)
export(fixNodes)
export(forceEqualTipHeights)
export(gblocks)
export(identifyEmptyCells)
export(index2DNAbin)
export(mafft)
export(mafft.merge)
export(mrbayes)
export(mrbayes.lset)
export(mrbayes.mcmc)
export(mrbayes.prset)
export(multistateMCMC)
export(multistateML)
export(neighboringPairs)
export(noi)
export(ntip)
export(operator)
export(parameter)
export(partitionfinder)
export(pathd8)
export(phylo2mafft)
export(phylo2mst)
export(pis)
export(prank)
export(raxml)
export(raxml.partitions)
export(rbeauti)
export(rc)
export(read.beast)
export(read.beast.table)
export(read.fas)
export(read.nex)
export(read.phy)
export(sister)
export(splitIntoClades)
export(terminal.clades)
export(terminalSisters)
export(tipHeights)
export(trimEnds)
export(unlistFirstLevel)
export(unresolve.clade)
export(write.fas)
export(write.nex)
export(write.phy)
import(XML)
import(ape)
importFrom(ape,Ntip)
importFrom(ape,bind.tree)
importFrom(ape,compute.brlen)
importFrom(ape,drop.tip)
importFrom(ape,is.binary)
importFrom(ape,multi2di)
importFrom(ape,read.tree)
importFrom(data.table,fread)
importFrom(phangorn,write.phyDat)
importFrom(plyr,rbind.fill)
importFrom(utils,data)
importFrom(utils,head)
importFrom(utils,read.table)
importFrom(utils,tail)
importFrom(utils,write.table)