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Non-docker support? #356

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Toseph opened this issue Feb 3, 2022 · 1 comment
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Non-docker support? #356

Toseph opened this issue Feb 3, 2022 · 1 comment
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setup Issue setting up AlphaFold usage question Further information is requested

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@Toseph
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Toseph commented Feb 3, 2022

Hello, I was looking to see if this program can be used with just a python venv or with singularity.
The systems I am working on do not allow for docker/root exposure but there are requests to use alphafold in our environment. I am having trouble identifying any documentation that reveals a non-dockerized use of this software.

@Augustin-Zidek Augustin-Zidek added setup Issue setting up AlphaFold usage question Further information is requested labels Feb 4, 2022
@Augustin-Zidek
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Hi, this is possible, it just requires more work to get things set up and we currently provide support only for running via Docker. Assuming your system has all the needed software and libraries, you can just run run_alphafold.py.

You can find more information about running under Singularity here: #10 and #24.

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Labels
setup Issue setting up AlphaFold usage question Further information is requested
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