main.yml

name: nextflow.py CI

on: [push]

jobs:
  build:

    runs-on: ubuntu-latest
    strategy:
      matrix:
        python-version:
          - "3.10"
          - "3.11"
          - "3.12"
          - "3.13"
        nextflow-version:
          - "24.10.4"
          - "23.10.4"
          - "22.10.8"

    steps:
      - uses: actions/checkout@v2
      - name: Set up Python ${{ matrix.python-version }}
        uses: actions/setup-python@v2
        with:
          python-version: ${{ matrix.python-version }}
      - name: Set up Java
        uses: actions/setup-java@v1
        with:
          java-version: '11'
      - name: Install Nextflow ${{ matrix.nextflow-version }}
        run: |
          mkdir install
          cd install
          export NXF_VER=${{ matrix.nextflow-version }}
          curl -s https://get.nextflow.io | bash
          chmod +x nextflow
          mv nextflow /usr/local/bin
          cd ..
          rm -r install
      - name: Install dependencies
        run: |
          python -m pip install --upgrade pip
          pip install python-coveralls
          pip install freezegun
          pip install coverage==4.5.4
      - name: Test
        run: |
          python -m unittest discover tests