diff --git a/SConstruct b/SConstruct
index 569ee24d8506..94574aacb226 100644
--- a/SConstruct
+++ b/SConstruct
@@ -861,7 +861,7 @@ else:  # GCC, Clang
             if cc_version_major >= 11:  # Broke on MethodBind templates before GCC 11.
                 env.Append(CCFLAGS=["-Wlogical-op"])
         elif methods.using_clang(env) or methods.using_emcc(env):
-            env.Append(CCFLAGS=["-Wimplicit-fallthrough", "-Wno-undefined-var-template"])
+            env.Append(CCFLAGS=["-Wimplicit-fallthrough"])
     elif env["warnings"] == "all":
         env.Append(CCFLAGS=["-Wall"] + common_warnings)
     elif env["warnings"] == "moderate":
diff --git a/core/os/safe_binary_mutex.h b/core/os/safe_binary_mutex.h
index 4ca4b50b02cd..8af2f0d856b6 100644
--- a/core/os/safe_binary_mutex.h
+++ b/core/os/safe_binary_mutex.h
@@ -37,6 +37,9 @@
 
 #ifdef THREADS_ENABLED
 
+#pragma clang diagnostic push
+#pragma clang diagnostic ignored "-Wundefined-var-template"
+
 // A very special kind of mutex, used in scenarios where these
 // requirements hold at the same time:
 // - Must be used with a condition variable (only binary mutexes are suitable).
@@ -105,6 +108,8 @@ class MutexLock<SafeBinaryMutex<Tag>> {
 	}
 };
 
+#pragma clang diagnostic pop
+
 #else // No threads.
 
 template <int Tag>