moved local files into new folder to prevent upload to pypi

Author: mpioch

.gitignore

@@ -17,3 +17,4 @@ run_pylint.sh
 PyPi.txt
 TARGET/*
 ~*.docx
+NOTCOMMIT

Bugtracker.txt

@@ -3,9 +3,11 @@ include *.md
 include AUTHORS
 include COPYRIGHT
 include LICENSE
-recursive-include TOPP *.py
-recursive-include TOPP *.ttd
-prune TOPP/SCRIPTS
-prune TOPP/EXTERNAL
 recursive-include data *.mzML
 recursive-include docs *.pdf
+recursive-include glyxtoolms *.gif
+recursive-include glyxtoolms *.pickle
+recursive-include glyxtoolms *.ttd
+prune glyxtoolms/TOPP/EXTERNAL
+prune glyxtoolms/TOPP/EXTERNAL
+prune NOTCOMMIT

MANIFEST.in

@@ -13,67 +13,13 @@
  engine) and a visulization / evaluation tool for further manual analysis of the results. 
  Source code available under https://github.com/glyXera/glyXtoolMS""",
     'license': 'GPL-3.0',
-    'version': '0.1.5.3',
+    'version': '0.1.5.4',
     'author': 'Markus Pioch',
     'author_email': '[email protected]',
     'python_requires':'>=2.6, <3',
     'install_requires': ['numpy','pyopenms','lxml','canvasvg','configparser','pyperclip','xlwt'],
     'packages': ['glyxtoolms', 'glyxtoolms.gui','glyxtoolms.TOPP'],
-    'package_data':{'glyxtoolms.gui': ['resources/*.gif','resources/isotope_confidence.pickle'],
-                    'glyxtoolms.TOPP': ['ConsensusSearch.py',
-                        'ConsensusSearch.ttd',
-                        'FeatureExtractor.py',
-                        'FeatureExtractor.ttd',
-                        'FeatureFinderMS.py',
-                        'FeatureFinderMS.ttd',
-                        'FileBuilder.py',
-                        'FileBuilder.ttd',
-                        'FragmentationTypeExtractor.py',
-                        'FragmentationTypeExtractor.ttd',
-                        'FragmentationTypeFilesplitter.py',
-                        'FragmentationTypeFilesplitter.ttd',
-                        'FragmentCheck.py',
-                        'FragmentCheck.ttd',
-                        'GlycanBuilder.py',
-                        'GlycanBuilder.ttd',
-                        'GlycanScorer.py',
-                        'GlycanScorer.ttd',
-                        'GlycoDomainViewer.py',
-                        'GlycoDomainViewer.ttd',
-                        'GlycoIdentificationScore.py',
-                        'GlycoIdentificationScore.ttd',
-                        'GlycopeptideDigest.py',
-                        'GlycopeptideDigest.ttd',
-                        'GlycopeptideMatcher.py',
-                        'GlycopeptideMatcher.ttd',
-                        'GlycopeptideTable.py',
-                        'GlycopeptideTable.ttd',
-                        'glyxFilter.py',
-                        'glyxFilter.ttd',
-                        'glyxReporter.py',
-                        'glyxReporter.ttd',
-                        'HexNAcRatio.py',
-                        'HexNAcRatio.ttd',
-                        'HGIReporter.py',
-                        'HGIReporter.ttd',
-                        'IdentificationDiscriminator.py',
-                        'IdentificationDiscriminator.ttd',
-                        'IdentificationMerger.py',
-                        'IdentificationMerger.ttd',
-                        'IdentificationTransfer.py',
-                        'IdentificationTransfer.ttd',
-                        'OxoniumFilter.py',
-                        'OxoniumFilter.ttd',
-                        'PdfReporter.py',
-                        'PdfReporter.ttd',
-                        'PeptideFilter.py',
-                        'PeptideFilter.ttd',
-                        'PeptideScorer.py',
-                        'PeptideScorer.ttd',
-                        'RemoveFeatures.py',
-                        'RemoveFeatures.ttd',
-                        'RobustPeakPicker.py',
-                        'RobustPeakPicker.ttd'] },
+    'package_data':{'glyxtoolms.gui': ['resources/*.gif','resources/isotope_confidence.pickle'] },
     'scripts': [],
     'entry_points': {
         'gui_scripts': [