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.devcontainer/Dockerfile

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#!/bin/sh
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# Copyright 2021 Universität Tübingen
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# Copyright 2021 Universität Tübingen, DKFZ and EMBL for the German Human Genome-Phenome Archive (GHGA)
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.

Dockerfile

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# Copyright 2021 Universität Tübingen
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# Copyright 2021 Universität Tübingen, DKFZ and EMBL for the German Human Genome-Phenome Archive (GHGA)
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.

LICENSE.txt

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same "printed page" as the copyright notice for easier
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identification within third-party archives.
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Copyright 2021 Universität Tübingen, Germany
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Copyright 2021 Universität Tübingen, DKFZ and EMBL for the German Human Genome-Phenome Archive (GHGA), Germany
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Licensed under the Apache License, Version 2.0 (the "License");
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you may not use this file except in compliance with the License.

MANIFEST.in

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# Copyright 2021 Universität Tübingen
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# Copyright 2021 Universität Tübingen, DKFZ and EMBL for the German Human Genome-Phenome Archive (GHGA)
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.

datameta.compose.yml

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# Copyright 2021 Universität Tübingen
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# Copyright 2021 Universität Tübingen, DKFZ and EMBL for the German Human Genome-Phenome Archive (GHGA)
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.

datameta/__init__.py

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# Copyright 2021 Universität Tübingen
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# Copyright 2021 Universität Tübingen, DKFZ and EMBL for the German Human Genome-Phenome Archive (GHGA)
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.

datameta/api/__init__.py

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# Copyright 2021 Universität Tübingen
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# Copyright 2021 Universität Tübingen, DKFZ and EMBL for the German Human Genome-Phenome Archive (GHGA)
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.

datameta/api/apikeys.py

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# Copyright 2021 Universität Tübingen
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# Copyright 2021 Universität Tübingen, DKFZ and EMBL for the German Human Genome-Phenome Archive (GHGA)
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.

datameta/api/appsettings.py

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# Copyright 2021 Universität Tübingen
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# Copyright 2021 Universität Tübingen, DKFZ and EMBL for the German Human Genome-Phenome Archive (GHGA)
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.

datameta/api/files.py

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# Copyright 2021 Universität Tübingen
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# Copyright 2021 Universität Tübingen, DKFZ and EMBL for the German Human Genome-Phenome Archive (GHGA)
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.

datameta/api/groups.py

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# Copyright 2021 Universität Tübingen
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# Copyright 2021 Universität Tübingen, DKFZ and EMBL for the German Human Genome-Phenome Archive (GHGA)
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.

datameta/api/metadata.py

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# Copyright 2021 Universität Tübingen
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# Copyright 2021 Universität Tübingen, DKFZ and EMBL for the German Human Genome-Phenome Archive (GHGA)
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.

datameta/api/metadatasets.py

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# Copyright 2021 Universität Tübingen
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# Copyright 2021 Universität Tübingen, DKFZ and EMBL for the German Human Genome-Phenome Archive (GHGA)
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.

datameta/api/openapi.yaml

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# Copyright 2021 Universität Tübingen
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# Copyright 2021 Universität Tübingen, DKFZ and EMBL for the German Human Genome-Phenome Archive (GHGA)
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.

datameta/api/password.py

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# Copyright 2021 Universität Tübingen
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# Copyright 2021 Universität Tübingen, DKFZ and EMBL for the German Human Genome-Phenome Archive (GHGA)
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.

datameta/api/submissions.py

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# Copyright 2021 Universität Tübingen
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# Copyright 2021 Universität Tübingen, DKFZ and EMBL for the German Human Genome-Phenome Archive (GHGA)
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.

datameta/api/ui/__init__.py

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# Copyright 2021 Universität Tübingen
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# Copyright 2021 Universität Tübingen, DKFZ and EMBL for the German Human Genome-Phenome Archive (GHGA)
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.

datameta/api/ui/admin.py

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# Copyright 2021 Universität Tübingen
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# Copyright 2021 Universität Tübingen, DKFZ and EMBL for the German Human Genome-Phenome Archive (GHGA)
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.

datameta/api/ui/convert.py

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# Copyright 2021 Universität Tübingen
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# Copyright 2021 Universität Tübingen, DKFZ and EMBL for the German Human Genome-Phenome Archive (GHGA)
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.

datameta/api/ui/forgot.py

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# Copyright 2021 Universität Tübingen
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# Copyright 2021 Universität Tübingen, DKFZ and EMBL for the German Human Genome-Phenome Archive (GHGA)
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.

datameta/api/ui/pending.py

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# Copyright 2021 Universität Tübingen
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# Copyright 2021 Universität Tübingen, DKFZ and EMBL for the German Human Genome-Phenome Archive (GHGA)
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.

datameta/api/ui/register.py

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# Copyright 2021 Universität Tübingen
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# Copyright 2021 Universität Tübingen, DKFZ and EMBL for the German Human Genome-Phenome Archive (GHGA)
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.

datameta/api/upload.py

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# Copyright 2021 Universität Tübingen
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# Copyright 2021 Universität Tübingen, DKFZ and EMBL for the German Human Genome-Phenome Archive (GHGA)
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.

datameta/api/users.py

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# Copyright 2021 Universität Tübingen
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# Copyright 2021 Universität Tübingen, DKFZ and EMBL for the German Human Genome-Phenome Archive (GHGA)
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.

datameta/email/__init__.py

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# Copyright 2021 Universität Tübingen
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# Copyright 2021 Universität Tübingen, DKFZ and EMBL for the German Human Genome-Phenome Archive (GHGA)
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.

datameta/email/smtp.py

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# Copyright 2021 Universität Tübingen
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# Copyright 2021 Universität Tübingen, DKFZ and EMBL for the German Human Genome-Phenome Archive (GHGA)
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.

datameta/errors.py

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# Copyright 2021 Universität Tübingen
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# Copyright 2021 Universität Tübingen, DKFZ and EMBL for the German Human Genome-Phenome Archive (GHGA)
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.

datameta/linting.py

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# Copyright 2021 Universität Tübingen
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# Copyright 2021 Universität Tübingen, DKFZ and EMBL for the German Human Genome-Phenome Archive (GHGA)
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.

datameta/models/__init__.py

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# Copyright 2021 Universität Tübingen
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# Copyright 2021 Universität Tübingen, DKFZ and EMBL for the German Human Genome-Phenome Archive (GHGA)
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.

datameta/models/db.py

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# Copyright 2021 Universität Tübingen
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# Copyright 2021 Universität Tübingen, DKFZ and EMBL for the German Human Genome-Phenome Archive (GHGA)
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.

datameta/models/meta.py

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# Copyright 2021 Universität Tübingen
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# Copyright 2021 Universität Tübingen, DKFZ and EMBL for the German Human Genome-Phenome Archive (GHGA)
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.

datameta/pshell.py

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# Copyright 2021 Universität Tübingen
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# Copyright 2021 Universität Tübingen, DKFZ and EMBL for the German Human Genome-Phenome Archive (GHGA)
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.

datameta/resource.py

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# Copyright 2021 Universität Tübingen, DKFZ and EMBL for the German Human Genome-Phenome Archive (GHGA)
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.

datameta/routes.py

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# Copyright 2021 Universität Tübingen, DKFZ and EMBL for the German Human Genome-Phenome Archive (GHGA)
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.

datameta/samplesheet.py

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# Copyright 2021 Universität Tübingen, DKFZ and EMBL for the German Human Genome-Phenome Archive (GHGA)
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.

datameta/scripts/initialize_db.py

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# Copyright 2021 Universität Tübingen, DKFZ and EMBL for the German Human Genome-Phenome Archive (GHGA)
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.

datameta/security.py

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# Copyright 2021 Universität Tübingen
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# Copyright 2021 Universität Tübingen, DKFZ and EMBL for the German Human Genome-Phenome Archive (GHGA)
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.

datameta/settings.py

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# Copyright 2021 Universität Tübingen, DKFZ and EMBL for the German Human Genome-Phenome Archive (GHGA)
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.

datameta/siteid.py

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# Copyright 2021 Universität Tübingen, DKFZ and EMBL for the German Human Genome-Phenome Archive (GHGA)
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.

datameta/static/js/account.js

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/*
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# Copyright 2021 Universität Tübingen
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# Copyright 2021 Universität Tübingen, DKFZ and EMBL for the German Human Genome-Phenome Archive (GHGA)
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.

datameta/static/js/admin.js

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/*
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# Copyright 2021 Universität Tübingen
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# Copyright 2021 Universität Tübingen, DKFZ and EMBL for the German Human Genome-Phenome Archive (GHGA)
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.

datameta/static/js/datameta.js

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/*
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# Copyright 2021 Universität Tübingen
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# Copyright 2021 Universität Tübingen, DKFZ and EMBL for the German Human Genome-Phenome Archive (GHGA)
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.

datameta/static/js/fileupload.js

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/*
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# Copyright 2021 Universität Tübingen, DKFZ and EMBL for the German Human Genome-Phenome Archive (GHGA)
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.

datameta/static/js/forgot.js

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/*
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# Copyright 2021 Universität Tübingen, DKFZ and EMBL for the German Human Genome-Phenome Archive (GHGA)
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.

datameta/static/js/register.js

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/*
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# Copyright 2021 Universität Tübingen
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# Copyright 2021 Universität Tübingen, DKFZ and EMBL for the German Human Genome-Phenome Archive (GHGA)
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.

datameta/static/js/setpass.js

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/*
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# Copyright 2021 Universität Tübingen, DKFZ and EMBL for the German Human Genome-Phenome Archive (GHGA)
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.

datameta/static/js/submit.js

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/*
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# Copyright 2021 Universität Tübingen, DKFZ and EMBL for the German Human Genome-Phenome Archive (GHGA)
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.

datameta/storage.py

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# Copyright 2021 Universität Tübingen, DKFZ and EMBL for the German Human Genome-Phenome Archive (GHGA)
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.

datameta/views/account.py

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# Copyright 2021 Universität Tübingen, DKFZ and EMBL for the German Human Genome-Phenome Archive (GHGA)
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.

datameta/views/admin.py

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# Copyright 2021 Universität Tübingen, DKFZ and EMBL for the German Human Genome-Phenome Archive (GHGA)
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.

datameta/views/default.py

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# Copyright 2021 Universität Tübingen, DKFZ and EMBL for the German Human Genome-Phenome Archive (GHGA)
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.

datameta/views/forgot.py

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# Copyright 2021 Universität Tübingen, DKFZ and EMBL for the German Human Genome-Phenome Archive (GHGA)
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.

datameta/views/home.py

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# Copyright 2021 Universität Tübingen, DKFZ and EMBL for the German Human Genome-Phenome Archive (GHGA)
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.

datameta/views/login.py

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# Copyright 2021 Universität Tübingen, DKFZ and EMBL for the German Human Genome-Phenome Archive (GHGA)
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.

datameta/views/notfound.py

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# you may not use this file except in compliance with the License.

datameta/views/register.py

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# Copyright 2021 Universität Tübingen, DKFZ and EMBL for the German Human Genome-Phenome Archive (GHGA)
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.

datameta/views/setpass.py

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# Copyright 2021 Universität Tübingen, DKFZ and EMBL for the German Human Genome-Phenome Archive (GHGA)
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# you may not use this file except in compliance with the License.

datameta/views/submit.py

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# Copyright 2021 Universität Tübingen
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# Copyright 2021 Universität Tübingen, DKFZ and EMBL for the German Human Genome-Phenome Archive (GHGA)
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.

datameta/views/view.py

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# Copyright 2021 Universität Tübingen
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# Copyright 2021 Universität Tübingen, DKFZ and EMBL for the German Human Genome-Phenome Archive (GHGA)
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.

docker/dev_install

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# Copyright 2021 Universität Tübingen
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# Copyright 2021 Universität Tübingen, DKFZ and EMBL for the German Human Genome-Phenome Archive (GHGA)
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.

docker/dev_launcher

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# Copyright 2021 Universität Tübingen
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# Copyright 2021 Universität Tübingen, DKFZ and EMBL for the German Human Genome-Phenome Archive (GHGA)
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.

docker/launcher

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# Copyright 2021 Universität Tübingen
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# Copyright 2021 Universität Tübingen, DKFZ and EMBL for the German Human Genome-Phenome Archive (GHGA)
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.

pytest.ini

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# Copyright 2021 Universität Tübingen
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# Copyright 2021 Universität Tübingen, DKFZ and EMBL for the German Human Genome-Phenome Archive (GHGA)
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.

setup.py

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# Copyright 2021 Universität Tübingen
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# Copyright 2021 Universität Tübingen, DKFZ and EMBL for the German Human Genome-Phenome Archive (GHGA)
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.

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