From 560fb36ba3ea753085a3de3f4e79d502a5e8444a Mon Sep 17 00:00:00 2001 From: Bob Yantosca Date: Thu, 8 Aug 2024 16:45:19 -0400 Subject: [PATCH 1/3] Add new emission species to the emission_species.yml file gcpy/benchmark/modules/emission_species.yml - Added species CH2I2, CH2IBr, CH2ICl, MOH, O3, PHEN, SALAAL, SALACL, SALCAL, and SALCCL CHANGELOG.md - Updated accordingly Signed-off-by: Bob Yantosca --- CHANGELOG.md | 3 +++ gcpy/benchmark/modules/emission_species.yml | 10 ++++++++++ 2 files changed, 13 insertions(+) diff --git a/CHANGELOG.md b/CHANGELOG.md index 2dc282e..a11e8e1 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -5,6 +5,9 @@ All notable changes to GCPy will be documented in this file. The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/), and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html). ## [Unreleased] - TBD +### Added +- Updated `gcpy/benchmark/modules/emission_species.yml` file with emission species for GEOS-Chem 14.5.0 + ### Fixed - Fixed formatting error in `.github/workflows/stale.yml` that caused the Mark Stale Issues action not to run - Added brackets around `exempt-issue-labels` list in `.github/workflows/stale.yml` diff --git a/gcpy/benchmark/modules/emission_species.yml b/gcpy/benchmark/modules/emission_species.yml index 47c4c72..a612188 100644 --- a/gcpy/benchmark/modules/emission_species.yml +++ b/gcpy/benchmark/modules/emission_species.yml @@ -12,6 +12,9 @@ FullChemBenchmark: C2H6: Tg C3H8: Tg CH2Br2: Tg + CH2I2: Tg + CH2IBr: Tg + CH2ICl: Tg CH2O: Tg CHBr3: Tg CO: Tg @@ -36,17 +39,24 @@ FullChemBenchmark: MEK: Tg MENO3: Tg MGLY: Tg + MOH: Tg MTPA: Tg MTPO: Tg NH3: Tg 'NO': Tg NO2: Tg + O3: Tg OCPI: Tg OCPO: Tg + PHEN: Tg PRPE: Tg RCHO: Tg SALA: Tg + SALAAL: Tg + SALACL: Tg SALC: Tg + SALCAL: Tg + SALCCL: Tg SO2: Tg SO4: Tg SOAP: Tg From 9d2c0545e6f1e1a62204f111468cd12453f95e6f Mon Sep 17 00:00:00 2001 From: Bob Yantosca Date: Wed, 14 Aug 2024 11:53:35 -0400 Subject: [PATCH 2/3] Updated benchmark_categories.yml and lumped_species.yml for 14.5.0 gcpy/benchmark/modules/benchmark_categories.yml gcpy/benchmark/modules/lumped_species.yml - Updated with the latest species for GEOS-Chem 14.5.0, corresponding to feedback from @ktravis213 and @kelvinhb CHANGELOG.md - Updated accordingly Signed-off-by: Bob Yantosca --- CHANGELOG.md | 2 + .../modules/benchmark_categories.yml | 8 +++- gcpy/benchmark/modules/lumped_species.yml | 42 +++++++++++++++++-- 3 files changed, 48 insertions(+), 4 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index a11e8e1..2597fbd 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -7,6 +7,8 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/), ## [Unreleased] - TBD ### Added - Updated `gcpy/benchmark/modules/emission_species.yml` file with emission species for GEOS-Chem 14.5.0 +- Updated `gcpy/benchmark/modules/benchmark_categories.yml` with the latest categories for GEOS-Chem 14.5.0 +- Updated `gcpy/benchmark/modules/lumped_species.yml` with speciations for GEOS-Chem 14.5.0 ### Fixed - Fixed formatting error in `.github/workflows/stale.yml` that caused the Mark Stale Issues action not to run diff --git a/gcpy/benchmark/modules/benchmark_categories.yml b/gcpy/benchmark/modules/benchmark_categories.yml index 73dd3e4..6b197e0 100644 --- a/gcpy/benchmark/modules/benchmark_categories.yml +++ b/gcpy/benchmark/modules/benchmark_categories.yml @@ -134,16 +134,20 @@ FullChemBenchmark: - LIMO HCs: - ALK4 + - ALK6 - BENZ - CH4 - C2H2 - C2H4 - C2H6 - C3H8 + - C4H6 + - EBZ - PRPE + - STYR + - TMB - TOLU - XYLE - ROy: ROy: - H2O2 - H @@ -182,6 +186,7 @@ FullChemBenchmark: Acids: - ACTA Aldehydes: + - ACR - ALD2 - BALD - CH2O @@ -201,6 +206,7 @@ FullChemBenchmark: - GLYC - GLYX - HCOOH + - RCOOH - MAP - PHEN - RCHO diff --git a/gcpy/benchmark/modules/lumped_species.yml b/gcpy/benchmark/modules/lumped_species.yml index 2caf948..e5a73e9 100644 --- a/gcpy/benchmark/modules/lumped_species.yml +++ b/gcpy/benchmark/modules/lumped_species.yml @@ -108,6 +108,21 @@ NOx: OLND: 1 OLNN: 1 NOy: + ALK4N1: 1 + ALK4N2: 1 + APAN: 1 + APINN: 1 + AROMPN: 1 + BPINN: 1 + BPINON: 1 + BrNO2: 1 + BrNO3: 1 + BUTN: 1 + BZPAN: 1 + C96N: 1 + ClNO2: 1 + ClNO3: 1 + ETHN: 1 ETHLN: 1 ETNO3: 1 HNO2: 1 @@ -130,6 +145,7 @@ NOy: INO: 1 INO2B: 1 INO2D: 1 + INPB: 1 INPD: 1 IONO: 1 IONO2: 1 @@ -138,6 +154,9 @@ NOy: ISOPNOO2: 1 ITCN: 1 ITHN: 1 + LIMN: 1 + LIMNB: 1 + LIMPAN: 1 MACRNO2: 1 MCRHN: 1 MCRHNB: 1 @@ -148,6 +167,7 @@ NOy: N: 1 N2O5: 2 'NO': 1 + NPHEN: 1 NO2: 1 NO3: 1 NPRNO3: 1 @@ -230,12 +250,26 @@ Ox: R4N2: 1 RO2: A3O2: 1 + ACO3: 1 + ACRO2: 1 + ALK4N1: 1 + ALK4O2: 1 + APINO2: 1 + AROMCO3: 1 + AROMRO2: 1 ATO2: 1 B3O2: 1 - BRO2: 2 + BENZO2: 1 + BPINO2: 1 + BPINOO2: 1 + BUTO2: 1 + BZCO3: 1 C4HVP1: 1 C4HVP2: 1 + C96O2: 1 ETO2: 1 + ETOO: 1 + GCO3: 1 HO2: 1 HPALD1OO: 1 HPALD2OO: 1 @@ -260,20 +294,22 @@ RO2: ISOPNOO2: 1 KO2: 1 LIMO2: 1 + LIMO3: 1 + LIMKO2: 1 MACR1OO: 1 MACRNO2: 1 MCROHOO: 1 MCO3: 1 + MEKCO3: 1 MO2: 1 MVKOHOO: 1 + OTHRO2: 1 PIO2: 1 PO2: 1 PRN1: 1 R4N1: 1 R4O2: 1 RCO3: 1 - TRO2: 1 - XRO2: 1 SOx: SO2: 1 SO4: 1 From f7077b3755427a255053cc86d53f1c1b36a779cd Mon Sep 17 00:00:00 2001 From: Bob Yantosca Date: Thu, 15 Aug 2024 10:49:03 -0400 Subject: [PATCH 3/3] Add ACR, C4H6, MVK, STYR, TMB to emission_species.yml gcpy/benchmark/modules/emission_species.yml - Added new species from GEOS-Chem 14.5.0: ACR, C4H6, MVK, STYR, TMB Signed-off-by: Bob Yantosca --- gcpy/benchmark/modules/emission_species.yml | 5 +++++ 1 file changed, 5 insertions(+) diff --git a/gcpy/benchmark/modules/emission_species.yml b/gcpy/benchmark/modules/emission_species.yml index a612188..395c839 100644 --- a/gcpy/benchmark/modules/emission_species.yml +++ b/gcpy/benchmark/modules/emission_species.yml @@ -1,4 +1,5 @@ FullChemBenchmark: + ACR: Tg ACET: Tg ALD2: Tg ALK4: Tg @@ -11,6 +12,7 @@ FullChemBenchmark: C2H4: Tg C2H6: Tg C3H8: Tg + C4H6: Tg CH2Br2: Tg CH2I2: Tg CH2IBr: Tg @@ -37,6 +39,7 @@ FullChemBenchmark: LIMO: Tg MACR: Tg MEK: Tg + MVK: Tg MENO3: Tg MGLY: Tg MOH: Tg @@ -61,6 +64,8 @@ FullChemBenchmark: SO4: Tg SOAP: Tg SOAS: Tg + STYR: Tg + TMB: Tg TOLU: Tg XYLE: Tg pFe: Tg