test.sh

#!/bin/bash

fulldir=`pwd`

# use numdiff but fall back to diff if not found:
which numdiff >/dev/null
if [ $? -eq 0 ]
then
  diffcmd="numdiff -r 2e-5 -s ' \t\n[],'"
else
  diffcmd="diff"
  echo "WARNING: numdiff not found, please install! Falling back to diff."
fi

if [ -z $PYTHON ]
then
  PYTHON=python
fi

$PYTHON --version
# Quietly install burnman in development mode
echo "Installing BurnMan in development mode ..."
$PYTHON -m pip install -q -e .[dev]
echo ""

echo "Dependency tree:"
$PYTHON -m pip install -q pipdeptree .
$PYTHON -m pipdeptree -p burnman -d 1 2> /dev/null
pycddlib_version=`pip freeze | grep "pycddlib=" | awk -F"==" '{print $2}'`
if [ ! -z "${pycddlib_version}" ]
then echo "└── pycddlib [optional, installed: ${pycddlib_version}]"
fi
pycddlib_version=`pip freeze | grep "pycddlib-standalone=" | awk -F"==" '{print $2}'`
if [ ! -z "${pycddlib_version}" ]
then echo "└── pycddlib-standalone [optional, installed: ${pycddlib_version}]"
fi
echo ""

# Quietly install optional modules after burnman
echo "Installing optional autograd and jupyter modules ..."
$PYTHON -m pip install -q autograd jupyter
echo ""

function testit {
t=$1

if [ "$t" == "__init__.py" ]
then
return 0
fi

fulldir=$2
#echo "*** testing $t ..."
($PYTHON <<EOF
import matplotlib as m
m.use('Template')
VERBOSE=1
RUNNING_TESTS=1
with open('$t') as f:
    CODE = compile(f.read(), '$t', 'exec')
    exec(CODE)
EOF
) >$t.tmp 2>$t.tmp.error
ret=$?
cat $t.tmp.error >>$t.tmp
rm -f $t.tmp.error

grep -v "which is a non-GUI backend" $t.tmp | grep -v "plt.show()" > tmpfile
mv tmpfile $t.tmp

if [ "$ret" -ne 0 ]
then
  echo "!  $t ... FAIL";
  cat $t.tmp;
  return 1;
else

  sedthing="s#$fulldir#BURNMAN#g"
  sed -i.bak -e $sedthing $t.tmp #remove the absolute path from warnings
  sed -i.bak -e "s/.py:[0-9]*:/.py:/g" $t.tmp #remove line numbers
  sed -i.bak -e 's/<stdin>:[0-9]*: //g' $t.tmp #remove line numbers
  sed -i.bak -e '/UserWarning: findfont: Could not match/d' $t.tmp #remove font warning crap
  sed -i.bak -e '/UserWarning: findfont: Font family/d' $t.tmp #remove font warning crap
  sed -i.bak -e '/tight_layout : falling back to Agg renderer/d' $t.tmp #remove font warning crap
  sed -i.bak -e '/cannot be converted with the encoding. Glyph may be wrong/d' $t.tmp #remove font warning crap
  sed -i.bak -e '/UserWarning: FigureCanvasTemplate/d' $t.tmp #remove plotting nonsense
  sed -i.bak -e '/time old .* time new/d' $t.tmp #remove timing from tests/debye.py
  sed -i.bak -e '/  relative central core pressure error.*/d' $t.tmp #remove residuals from examples/example_build_planet

  rm -f $t.tmp.bak

  (eval $diffcmd $t.tmp $fulldir/misc/ref/$t.out >/dev/null && rm $t.tmp && echo "  $t ... ok"
  ) || {
  echo "!  $t ... FAIL";
  echo "Check: `pwd`/$t.tmp $fulldir/misc/ref/$t.out";
  eval $diffcmd $t.tmp $fulldir/misc/ref/$t.out | head
  return 2;
  }

fi
}


echo "*** checking test suite ..."

# check for tabs in code:
for f in `find . -name \*.py | grep -v ipython/`
do

    grep $'\t' -q $f && \
	echo "ERROR: tabs found in '$f':" && \
	grep -n $'\t' $f && exit 0
done


$PYTHON -m unittest discover ./tests || (echo "ERROR: unittests failed"; exit 1) || exit 1
echo ""


echo "*** checking tutorial suite ..."
# Print the currently installed jupyter kernels
echo ""
echo "Checking for jupyter kernels..."
jupyter kernelspec list
echo ""

cd tutorial
for tutorial_notebook in `ls tutorial*.ipynb`
do
  tutorial_script="${tutorial_notebook%%.*}.py"
  jupyter nbconvert --to script $tutorial_notebook --log-level WARN
  testit $tutorial_script $fulldir || exit 1
  rm $tutorial_script
done
cd ..
echo ""


echo "*** checking examples/ ..."
cd examples
for test in `ls example*.py`
do
    [ $test == "example_inv_murakami.py" ] && echo "  *** skipping $test !" && continue
    [ $test == "example_premite_isothermal.py" ] && echo "  *** skipping $test !" && continue
    [ $test == "example_seismic_travel_times.py" ] && echo "  *** skipping $test !" && continue
    testit $test $fulldir || exit 1
done
cd ..
echo ""


echo "*** checking misc/ ..."
cd misc

for test in `ls *.py`
do
    [ $test == "burnman_path.py" ] && continue
    [ $test == "gen_doc.py" ] && echo "  *** skipping $test !" && continue
    [ $test == "table_mineral_library.py" ] && echo "  *** skipping $test !" && continue
    [ $test == "create_burnman_readable_perplex_table.py" ] && echo "  *** skipping $test !" && continue
    [ $test == "create_burnman_readable_perplex_table_v6.py" ] && echo "  *** skipping $test !" && continue

    testit $test $fulldir || exit 1
done
testit table_mineral_library.py $fulldir || exit 1
echo ""

echo "*** checking misc/benchmarks/ ..."
cd benchmarks
for test in `ls *.py`
do
    [ $test == "burnman_path.py" ] && continue
    testit $test $fulldir || exit 1
done
cd ../..
echo ""


echo "*** checking contrib/cider_tutorial_2014/ ..."
cd contrib/cider_tutorial_2014/
for test in `ls step*.py`
do
    testit $test $fulldir || exit 1
done
cd ../..
echo ""

echo "*** checking contrib/CHRU2014/ ..."
cd contrib/CHRU2014
for test in `ls *.py`
do
    [ $test == "helper_solid_solution.py" ] && echo "  *** skipping $test !" && continue
    testit $test $fulldir || exit 1
done
cd ../..
echo ""

echo "*** checking contrib/solution_polytope/ ..."
cd contrib/solution_polytope/
testit create_polytope_paper_tables.py $fulldir || exit 1
testit example_solution_creation_and_manipulation.py $fulldir || exit 1
cd ../..
echo ""

echo "   done"

echo ""
echo "*** ./test.sh done"