DESCRIPTION

Package: TitanCNA
Type: Package
Title: Subclonal copy number and LOH prediction from whole genome sequencing
        of tumours
Version: 1.23.1
Date: 2019-05-24
Author: Gavin Ha
Maintainer: Gavin Ha <gha@fredhutch.org>
Depends: R (>= 3.5.1)
Imports: IRanges (>= 2.6.1), GenomicRanges (>= 1.24.3), VariantAnnotation (>= 1.18.7),
        foreach (>= 1.4.3), GenomeInfoDb (>= 1.8.7), 
        data.table (>= 1.10.4), dplyr (>= 0.5.0), 
Description: Hidden Markov model to segment and predict regions of
        subclonal copy number alterations (CNA) and loss of
        heterozygosity (LOH), and estimate cellular prevalence of
        clonal clusters in tumour whole genome sequencing data.
License: GPL-3
biocViews: Sequencing, WholeGenome, DNASeq, ExomeSeq,
        StatisticalMethod, CopyNumberVariation, HiddenMarkovModel,
        Genetics, GenomicVariation, ImmunoOncology
URL: https://github.com/gavinha/TitanCNA