diff --git a/Cargo.lock b/Cargo.lock index 892fb7b22..0d315196c 100644 --- a/Cargo.lock +++ b/Cargo.lock @@ -1142,9 +1142,9 @@ checksum = "92ecc6618181def0457392ccd0ee51198e065e016d1d527a7ac1b6dc7c1f09d2" [[package]] name = "jiff" -version = "0.2.21" +version = "0.2.22" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "b3e3d65f018c6ae946ab16e80944b97096ed73c35b221d1c478a6c81d8f57940" +checksum = "819b44bc7c87d9117eb522f14d46e918add69ff12713c475946b0a29363ed1c2" dependencies = [ "jiff-static", "log", @@ -1155,9 +1155,9 @@ dependencies = [ [[package]] name = "jiff-static" -version = "0.2.21" +version = "0.2.22" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "a17c2b211d863c7fde02cbea8a3c1a439b98e109286554f2860bdded7ff83818" +checksum = "470252db18ecc35fd766c0891b1e3ec6cbbcd62507e85276c01bf75d8e94d4a1" dependencies = [ "proc-macro2", "quote", @@ -1420,9 +1420,9 @@ dependencies = [ [[package]] name = "noodles" -version = "0.105.0" +version = "0.106.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "503328e4a529f23164ed7a6d0ebe3df5bbd6d6f3d2cdf2f9473b4b9fd115aab5" +checksum = "34395c8dba986b5706354a4a761eb3e601fdbf1177df6e91b90f53d5f658245e" dependencies = [ "noodles-bam", "noodles-bgzf", @@ -1483,9 +1483,9 @@ dependencies = [ [[package]] name = "noodles-fasta" -version = "0.59.0" +version = "0.60.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "474485116c9683e8fbe1ebdedcf42eab8749b1727c324bdd0568677bb2bddd3a" +checksum = "a5c8ccd951d43ba0a1c4dcc1f86fdc2ee86c1742de2988956bcdf1bc58905769" dependencies = [ "bstr 1.12.1", "memchr", diff --git a/Cargo.toml b/Cargo.toml index c3eb6b36c..fa64dbbb8 100644 --- a/Cargo.toml +++ b/Cargo.toml @@ -37,7 +37,7 @@ rust-version.workspace = true clap = { version = "4", features = ["derive", "string"] } log = "0" thiserror = "2" -noodles = { version = "0.105.0", features = ["bam", "fasta", "sam", "bgzf", "core", "vcf"] } +noodles = { version = "0.106.0", features = ["bam", "fasta", "sam", "bgzf", "core", "vcf"] } noodles-bgzf = { version = "0.46.0", features = ["libdeflate"] } mimalloc = { version = "0.1.48", default-features = false } libmimalloc-sys = { version = "0.1.44", features = ["extended"], optional = true } diff --git a/crates/fgumi-consensus/Cargo.toml b/crates/fgumi-consensus/Cargo.toml index 92f213596..bbf4b5bb0 100644 --- a/crates/fgumi-consensus/Cargo.toml +++ b/crates/fgumi-consensus/Cargo.toml @@ -13,7 +13,7 @@ anyhow = "1.0" approx = "0.5" bstr = "1.12.1" log = "0" -noodles = { version = "0.105.0", features = ["bam", "sam", "core"] } +noodles = { version = "0.106.0", features = ["bam", "sam", "core"] } rand = "0.10" wide = "1.1" fgumi-dna = { workspace = true } diff --git a/crates/fgumi-metrics/Cargo.toml b/crates/fgumi-metrics/Cargo.toml index fbf5b1465..6af8543a8 100644 --- a/crates/fgumi-metrics/Cargo.toml +++ b/crates/fgumi-metrics/Cargo.toml @@ -11,7 +11,7 @@ license.workspace = true serde = { version = "1.0", features = ["derive"] } anyhow = "1.0" fgoxide = "0.6.0" -noodles = { version = "0.105.0", features = ["sam"], optional = true } +noodles = { version = "0.106.0", features = ["sam"], optional = true } [dev-dependencies] tempfile = "3.3.0" diff --git a/crates/fgumi-raw-bam/Cargo.toml b/crates/fgumi-raw-bam/Cargo.toml index 883870ffb..977675de2 100644 --- a/crates/fgumi-raw-bam/Cargo.toml +++ b/crates/fgumi-raw-bam/Cargo.toml @@ -8,7 +8,7 @@ repository.workspace = true license.workspace = true [dependencies] -noodles = { version = "0.105.0", features = ["bam", "sam"], optional = true } +noodles = { version = "0.106.0", features = ["bam", "sam"], optional = true } anyhow = { version = "1.0.102", optional = true } [features] diff --git a/crates/fgumi-sam/Cargo.toml b/crates/fgumi-sam/Cargo.toml index 2495e9c3c..8bfa37879 100644 --- a/crates/fgumi-sam/Cargo.toml +++ b/crates/fgumi-sam/Cargo.toml @@ -8,7 +8,7 @@ repository.workspace = true license.workspace = true [dependencies] -noodles = { version = "0.105.0", features = ["bam", "sam", "core"] } +noodles = { version = "0.106.0", features = ["bam", "sam", "core"] } fgumi-raw-bam = { workspace = true, features = ["noodles"] } bstr = "1.12.1" log = "0"