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Hello,
This is a new feature request.
In the note of GroupBreadsByUmi, it says
Reads are aggressively filtered out so that only high quality reads/mappings are taken forward. Paired-end reads must have both reads mapped to the same chromosome with both reads having mapping quality >= min-mapq. (Note: the MQ tag is required on reads with mapped mates).
However, we are particularly interested in the discordant pairs as we are looking for SVs. Is it possible to add a switch to loosen this restriction?
I hope this new feature also propagate to CallMolecularConsensusReads and CallDuplexConsensusReads
The text was updated successfully, but these errors were encountered:
Hello,
This is a new feature request.
In the note of
GroupBreadsByUmi
, it saysHowever, we are particularly interested in the discordant pairs as we are looking for SVs. Is it possible to add a switch to loosen this restriction?
I hope this new feature also propagate to
CallMolecularConsensusReads
andCallDuplexConsensusReads
The text was updated successfully, but these errors were encountered: