Close the file handler if the file is corrupt. #90
Workflow file for this run
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| name: CI | |
| on: | |
| push: | |
| branches: | |
| - "*" | |
| pull_request: | |
| branches: | |
| - "*" | |
| workflow_dispatch: # allows you to trigger manually | |
| jobs: | |
| detect-ci-trigger: | |
| name: detect ci trigger | |
| runs-on: ubuntu-latest | |
| if: | | |
| github.repository == 'fujiisoup/sif_parser' | |
| && (github.event_name == 'push' || github.event_name == 'pull_request') | |
| outputs: | |
| triggered: ${{ steps.detect-trigger.outputs.trigger-found }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 2 | |
| test: | |
| name: Set up python | |
| runs-on: ubuntu-latest | |
| needs: detect-ci-trigger | |
| strategy: | |
| matrix: | |
| os: ["ubuntu-latest"] | |
| # Bookend python versions | |
| python-version: ["3.8", "3.10"] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 # Fetch all history for all branches and tags. | |
| - name: Set environment variables | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| echo "TODAY=$(date +'%Y-%m-%d')" >> $GITHUB_ENV | |
| echo "CONDA_ENV_FILE=ci/requirements/py${{ matrix.python-version }}.yml" >> $GITHUB_ENV | |
| - name: Setup miniconda and install sif-parser | |
| run: | | |
| conda env create -n test_env --file $CONDA_ENV_FILE; | |
| source /usr/share/miniconda/etc/profile.d/conda.sh; | |
| conda activate test_env; | |
| conda list; | |
| pip install --no-deps -e .; | |
| python -m pip install --no-deps -e . | |
| - name: Import sif_parser | |
| run: | | |
| source /usr/share/miniconda/etc/profile.d/conda.sh; | |
| conda activate test_env; | |
| python -c "import sif_parser" | |
| - name: Run tests | |
| run: | | |
| source /usr/share/miniconda/etc/profile.d/conda.sh; | |
| conda activate test_env; | |
| python -m pytest | |
| - name: Upload test results | |
| if: always() | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: Test results for ${{ runner.os }}-${{ matrix.python-version }} | |
| path: pytest.xml |