Feb-16 15:16:43.759 [main] DEBUG nextflow.cli.Launcher - $> nextflow run main.nf --input assets/samplesheet_230210_ktest.yaml --output /home/ktest/share/Working_folder/TRUNG/Result_Dir/Pipeline_bacannot -profile singularity,slurm -resume -w /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache --bacannot_db /home/ktest/pipeline_env/database/WGS/Database-bacannot Feb-16 15:16:44.806 [main] INFO nextflow.cli.CmdRun - N E X T F L O W ~ version 22.05.0-edge Feb-16 15:16:44.826 [main] DEBUG nextflow.config.ConfigBuilder - Found config local: /home/ktest/pipeline_env/workflow/kt-wgs-bacannot/nextflow.config Feb-16 15:16:44.826 [main] DEBUG nextflow.config.ConfigBuilder - Parsing config file: /home/ktest/pipeline_env/workflow/kt-wgs-bacannot/nextflow.config Feb-16 15:16:44.851 [main] DEBUG nextflow.config.ConfigBuilder - Applying config profile: `singularity,slurm` Feb-16 15:16:46.172 [main] DEBUG nextflow.plugin.PluginsFacade - Using Default plugins manager Feb-16 15:16:46.184 [main] INFO org.pf4j.DefaultPluginStatusProvider - Enabled plugins: [] Feb-16 15:16:46.185 [main] INFO org.pf4j.DefaultPluginStatusProvider - Disabled plugins: [] Feb-16 15:16:46.188 [main] INFO org.pf4j.DefaultPluginManager - PF4J version 3.4.1 in 'deployment' mode Feb-16 15:16:46.204 [main] DEBUG nextflow.plugin.PluginsFacade - Using Default plugins manager Feb-16 15:16:46.824 [main] DEBUG nextflow.config.ConfigBuilder - Available config profiles: [standard, cfc_dev, ifb_core, denbi_qbic, genotoul, alice, mjolnir_globe, uppmax, abims, nihbiowulf, nu_genomics, oist, sahmri, mpcdf, leicester, lugh, vsc_ugent, sage, cambridge, unibe_ibu, vai, czbiohub_aws, jax, cheaha, ccga_med, test, scw, tigem, google, computerome, seg_globe, sanger, dkfz, pasteur, eddie, medair, azurebatch, bi, hki, bigpurple, sbc_sharc, adcra, crukmi, cedars, docker, engaging, gis, psmn, eva, ucl_myriad, utd_ganymede, fgcz, crg, awsBatch, singularity, icr_davros, ceres, munin, rosalind, prince, hasta, hebbe, cfc, utd_sysbio, uzh, genouest, cbe, ebc, ku_sund_dangpu, ccga_dx, quicktest, crick, slurm, marvin, phoenix, biohpc_gen, mana, wehi, awsbatch, uct_hpc, imperial, maestro, aws_tower, binac] Feb-16 15:16:46.858 [main] DEBUG nextflow.cli.CmdRun - Applied DSL=2 from script declararion Feb-16 15:16:46.877 [main] INFO nextflow.cli.CmdRun - Launching `main.nf` [cranky_ampere] DSL2 - revision: b245bb408b Feb-16 15:16:46.878 [main] DEBUG nextflow.plugin.PluginsFacade - Setting up plugin manager > mode=prod; plugins-dir=/home/trungnguyen/.nextflow/plugins; core-plugins: nf-amazon@1.8.0,nf-azure@0.13.2,nf-console@1.0.3,nf-ga4gh@1.0.3,nf-google@1.2.0,nf-sqldb@0.4.1,nf-tower@1.4.0 Feb-16 15:16:46.879 [main] DEBUG nextflow.plugin.PluginsFacade - Plugins default=[] Feb-16 15:16:46.884 [main] INFO org.pf4j.DefaultPluginStatusProvider - Enabled plugins: [] Feb-16 15:16:46.885 [main] INFO org.pf4j.DefaultPluginStatusProvider - Disabled plugins: [] Feb-16 15:16:46.886 [main] INFO org.pf4j.DefaultPluginManager - PF4J version 3.4.1 in 'deployment' mode Feb-16 15:16:46.896 [main] INFO org.pf4j.AbstractPluginManager - No plugins Feb-16 15:16:46.948 [main] DEBUG nextflow.Session - Session uuid: 3c4fac2b-8400-43b0-afad-f0e8e9b122f4 Feb-16 15:16:46.948 [main] DEBUG nextflow.Session - Run name: cranky_ampere Feb-16 15:16:46.949 [main] DEBUG nextflow.Session - Executor pool size: 24 Feb-16 15:16:46.981 [main] DEBUG nextflow.cli.CmdRun - Version: 22.05.0-edge build 5704 Created: 25-05-2022 17:39 UTC (26-05-2022 00:39 ICST) System: Linux 5.15.0-60-generic Runtime: Groovy 3.0.10 on OpenJDK 64-Bit Server VM 11.0.17+8-post-Ubuntu-1ubuntu220.04 Encoding: UTF-8 (UTF-8) Process: 15645@c24r32-1 [192.168.0.10] CPUs: 24 - Mem: 31.3 GB (28.1 GB) - Swap: 2 GB (2 GB) Feb-16 15:16:47.089 [main] DEBUG nextflow.Session - Work-dir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache [nfs] Feb-16 15:16:47.138 [main] DEBUG nextflow.executor.ExecutorFactory - Extension executors providers=[GoogleLifeSciencesExecutor, AwsBatchExecutor, GoogleBatchExecutor] Feb-16 15:16:47.151 [main] DEBUG nextflow.Session - Observer factory: DefaultObserverFactory Feb-16 15:16:47.171 [main] DEBUG nextflow.Session - Observer factory: TowerFactory Feb-16 15:16:47.227 [main] DEBUG nextflow.cache.CacheFactory - Using Nextflow cache factory: nextflow.cache.DefaultCacheFactory Feb-16 15:16:47.238 [main] DEBUG nextflow.util.CustomThreadPool - Creating default thread pool > poolSize: 25; maxThreads: 1000 Feb-16 15:16:47.315 [main] DEBUG nextflow.Session - Session start invoked Feb-16 15:16:47.319 [main] DEBUG nextflow.trace.TraceFileObserver - Flow starting -- trace file: /home/ktest/share/Working_folder/TRUNG/Result_Dir/Pipeline_bacannot/pipeline_info/bacannot_trace_2023-02-16_15-16-46.txt Feb-16 15:16:47.632 [main] DEBUG nextflow.Session - Using default localLib path: /home/ktest/pipeline_env/workflow/kt-wgs-bacannot/lib Feb-16 15:16:47.641 [main] DEBUG nextflow.Session - Adding to the classpath library: /home/ktest/pipeline_env/workflow/kt-wgs-bacannot/lib Feb-16 15:16:47.642 [main] DEBUG nextflow.Session - Adding to the classpath library: /home/ktest/pipeline_env/workflow/kt-wgs-bacannot/lib/nfcore_external_java_deps.jar Feb-16 15:16:48.729 [main] DEBUG nextflow.script.ScriptRunner - > Launching execution Feb-16 15:16:49.034 [main] INFO nextflow.Nextflow - ------------------------------------------------------  fmalmeida/bacannot v3.2 ------------------------------------------------------ Core Nextflow options runName : cranky_ampere containerEngine: singularity launchDir : /home/ktest/pipeline_env/workflow/kt-wgs-bacannot workDir : /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache projectDir : /home/ktest/pipeline_env/workflow/kt-wgs-bacannot userName : trungnguyen profile : singularity,slurm configFiles : /home/ktest/pipeline_env/workflow/kt-wgs-bacannot/nextflow.config Input/output options input : assets/samplesheet_230210_ktest.yaml output : /home/ktest/share/Working_folder/TRUNG/Result_Dir/Pipeline_bacannot bacannot_db : /home/ktest/pipeline_env/database/WGS/Database-bacannot !! Only displaying parameters that differ from the pipeline defaults !! ------------------------------------------------------ If you use fmalmeida/bacannot for your analysis please cite: * The pipeline https://doi.org/10.5281/zenodo.3627669 * The nf-core framework https://doi.org/10.1038/s41587-020-0439-x * Software dependencies https://github.com/fmalmeida/bacannot/blob/master/CITATIONS.md ------------------------------------------------------ Feb-16 15:16:53.584 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_high` matches labels `process_high` for process with name BACANNOT:UNICYCLER Feb-16 15:16:53.586 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:UNICYCLER` matches process BACANNOT:UNICYCLER Feb-16 15:16:53.590 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm Feb-16 15:16:53.590 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm' Feb-16 15:16:53.596 [main] DEBUG nextflow.executor.Executor - [warm up] executor > slurm Feb-16 15:16:53.602 [main] DEBUG n.processor.TaskPollingMonitor - Creating task monitor for executor 'slurm' > capacity: 100; pollInterval: 5s; dumpInterval: 5m Feb-16 15:16:53.606 [main] DEBUG n.executor.AbstractGridExecutor - Creating executor 'slurm' > queue-stat-interval: 1m Feb-16 15:16:53.666 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_high` matches labels `process_high` for process with name BACANNOT:FLYE Feb-16 15:16:53.667 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:FLYE` matches process BACANNOT:FLYE Feb-16 15:16:53.668 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm Feb-16 15:16:53.668 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm' Feb-16 15:16:53.686 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_medium` matches labels `perl,process_medium` for process with name BACANNOT:PROKKA Feb-16 15:16:53.686 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:perl` matches labels `perl,process_medium` for process with name BACANNOT:PROKKA Feb-16 15:16:53.688 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm Feb-16 15:16:53.688 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm' Feb-16 15:16:53.696 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_ultralow` matches labels `perl,process_ultralow` for process with name BACANNOT:MLST Feb-16 15:16:53.697 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:perl` matches labels `perl,process_ultralow` for process with name BACANNOT:MLST Feb-16 15:16:53.698 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm Feb-16 15:16:53.698 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm' Feb-16 15:16:53.703 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `perl,process_low` for process with name BACANNOT:BARRNAP Feb-16 15:16:53.703 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:perl` matches labels `perl,process_low` for process with name BACANNOT:BARRNAP Feb-16 15:16:53.704 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm Feb-16 15:16:53.704 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm' Feb-16 15:16:53.708 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_ultralow` matches labels `misc,process_ultralow` for process with name BACANNOT:COMPUTE_GC Feb-16 15:16:53.708 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:db_download|db_tools|misc` matches labels `misc,process_ultralow` for process with name BACANNOT:COMPUTE_GC Feb-16 15:16:53.709 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm Feb-16 15:16:53.709 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm' Feb-16 15:16:53.713 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_high` matches labels `misc,process_high` for process with name BACANNOT:KOFAMSCAN Feb-16 15:16:53.713 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:db_download|db_tools|misc` matches labels `misc,process_high` for process with name BACANNOT:KOFAMSCAN Feb-16 15:16:53.714 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:KOFAMSCAN` matches process BACANNOT:KOFAMSCAN Feb-16 15:16:53.714 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm Feb-16 15:16:53.714 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm' Feb-16 15:16:53.720 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `misc,process_low` for process with name BACANNOT:KEGG_DECODER Feb-16 15:16:53.720 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:db_download|db_tools|misc` matches labels `misc,process_low` for process with name BACANNOT:KEGG_DECODER Feb-16 15:16:53.721 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm Feb-16 15:16:53.721 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm' Feb-16 15:16:53.726 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `python,process_low` for process with name BACANNOT:PLASMIDFINDER Feb-16 15:16:53.726 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:python` matches labels `python,process_low` for process with name BACANNOT:PLASMIDFINDER Feb-16 15:16:53.727 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm Feb-16 15:16:53.727 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm' Feb-16 15:16:53.731 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_medium` matches labels `python,process_medium` for process with name BACANNOT:PLATON Feb-16 15:16:53.732 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:python` matches labels `python,process_medium` for process with name BACANNOT:PLATON Feb-16 15:16:53.732 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm Feb-16 15:16:53.732 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm' Feb-16 15:16:53.737 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `perl,process_low` for process with name BACANNOT:ISLANDPATH Feb-16 15:16:53.737 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:perl` matches labels `perl,process_low` for process with name BACANNOT:ISLANDPATH Feb-16 15:16:53.737 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withName:ISLANDPATH` matches process BACANNOT:ISLANDPATH Feb-16 15:16:53.738 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm Feb-16 15:16:53.738 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm' Feb-16 15:16:53.744 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `misc,process_low` for process with name BACANNOT:VFDB Feb-16 15:16:53.744 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:db_download|db_tools|misc` matches labels `misc,process_low` for process with name BACANNOT:VFDB Feb-16 15:16:53.745 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm Feb-16 15:16:53.745 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm' Feb-16 15:16:53.750 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `misc,process_low` for process with name BACANNOT:VICTORS Feb-16 15:16:53.750 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:db_download|db_tools|misc` matches labels `misc,process_low` for process with name BACANNOT:VICTORS Feb-16 15:16:53.751 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm Feb-16 15:16:53.751 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm' Feb-16 15:16:53.756 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_medium` matches labels `misc,process_medium` for process with name BACANNOT:PHAST Feb-16 15:16:53.756 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:db_download|db_tools|misc` matches labels `misc,process_medium` for process with name BACANNOT:PHAST Feb-16 15:16:53.756 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm Feb-16 15:16:53.756 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm' Feb-16 15:16:53.762 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_medium` matches labels `python,process_medium` for process with name BACANNOT:PHIGARO Feb-16 15:16:53.762 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:python` matches labels `python,process_medium` for process with name BACANNOT:PHIGARO Feb-16 15:16:53.763 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm Feb-16 15:16:53.763 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm' Feb-16 15:16:53.768 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_medium` matches labels `python,process_medium` for process with name BACANNOT:PHISPY Feb-16 15:16:53.768 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:python` matches labels `python,process_medium` for process with name BACANNOT:PHISPY Feb-16 15:16:53.769 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm Feb-16 15:16:53.769 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm' Feb-16 15:16:53.778 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `misc,process_low` for process with name BACANNOT:ICEBERG Feb-16 15:16:53.778 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:db_download|db_tools|misc` matches labels `misc,process_low` for process with name BACANNOT:ICEBERG Feb-16 15:16:53.779 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm Feb-16 15:16:53.779 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm' Feb-16 15:16:53.784 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_medium` matches labels `misc,process_medium` for process with name BACANNOT:AMRFINDER Feb-16 15:16:53.784 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:db_download|db_tools|misc` matches labels `misc,process_medium` for process with name BACANNOT:AMRFINDER Feb-16 15:16:53.785 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm Feb-16 15:16:53.785 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm' Feb-16 15:16:53.790 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_medium` matches labels `python,process_medium` for process with name BACANNOT:CARD_RGI Feb-16 15:16:53.790 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:python` matches labels `python,process_medium` for process with name BACANNOT:CARD_RGI Feb-16 15:16:53.791 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm Feb-16 15:16:53.791 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm' Feb-16 15:16:53.795 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `misc,process_low` for process with name BACANNOT:ARGMINER Feb-16 15:16:53.795 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:db_download|db_tools|misc` matches labels `misc,process_low` for process with name BACANNOT:ARGMINER Feb-16 15:16:53.796 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm Feb-16 15:16:53.796 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm' Feb-16 15:16:53.801 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_medium` matches labels `misc,process_medium` for process with name BACANNOT:RESFINDER Feb-16 15:16:53.802 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:db_download|db_tools|misc` matches labels `misc,process_medium` for process with name BACANNOT:RESFINDER Feb-16 15:16:53.802 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm Feb-16 15:16:53.802 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm' Feb-16 15:16:53.808 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_high` matches labels `misc,process_high` for process with name BACANNOT:CALL_METHYLATION Feb-16 15:16:53.808 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:db_download|db_tools|misc` matches labels `misc,process_high` for process with name BACANNOT:CALL_METHYLATION Feb-16 15:16:53.809 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm Feb-16 15:16:53.809 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm' Feb-16 15:16:53.813 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_medium` matches labels `python,process_medium` for process with name BACANNOT:REFSEQ_MASHER Feb-16 15:16:53.813 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:python` matches labels `python,process_medium` for process with name BACANNOT:REFSEQ_MASHER Feb-16 15:16:53.814 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm Feb-16 15:16:53.814 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm' Feb-16 15:16:53.842 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_medium` matches labels `misc,process_medium` for process with name BACANNOT:DIGIS Feb-16 15:16:53.842 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:db_download|db_tools|misc` matches labels `misc,process_medium` for process with name BACANNOT:DIGIS Feb-16 15:16:53.844 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm Feb-16 15:16:53.844 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm' Feb-16 15:16:53.856 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_medium` matches labels `misc,process_medium` for process with name BACANNOT:ANTISMASH Feb-16 15:16:53.856 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:db_download|db_tools|misc` matches labels `misc,process_medium` for process with name BACANNOT:ANTISMASH Feb-16 15:16:53.857 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm Feb-16 15:16:53.858 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm' Feb-16 15:16:53.873 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_ultralow` matches labels `server,process_ultralow` for process with name BACANNOT:SEQUENCESERVER Feb-16 15:16:53.873 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:server` matches labels `server,process_ultralow` for process with name BACANNOT:SEQUENCESERVER Feb-16 15:16:53.874 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm Feb-16 15:16:53.874 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm' Feb-16 15:16:53.907 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_medium` matches labels `renv,process_medium,error_retry` for process with name BACANNOT:MERGE_ANNOTATIONS Feb-16 15:16:53.908 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:error_retry|db_download` matches labels `renv,process_medium,error_retry` for process with name BACANNOT:MERGE_ANNOTATIONS Feb-16 15:16:53.908 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:renv` matches labels `renv,process_medium,error_retry` for process with name BACANNOT:MERGE_ANNOTATIONS Feb-16 15:16:53.909 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm Feb-16 15:16:53.909 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm' Feb-16 15:16:53.919 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_ultralow` matches labels `misc,process_ultralow` for process with name BACANNOT:DRAW_GIS Feb-16 15:16:53.919 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:db_download|db_tools|misc` matches labels `misc,process_ultralow` for process with name BACANNOT:DRAW_GIS Feb-16 15:16:53.920 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm Feb-16 15:16:53.920 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm' Feb-16 15:16:53.928 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_ultralow` matches labels `misc,process_ultralow` for process with name BACANNOT:GFF2GBK Feb-16 15:16:53.928 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:db_download|db_tools|misc` matches labels `misc,process_ultralow` for process with name BACANNOT:GFF2GBK Feb-16 15:16:53.929 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm Feb-16 15:16:53.929 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm' Feb-16 15:16:53.942 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_medium` matches labels `renv,process_medium` for process with name BACANNOT:CREATE_SQL Feb-16 15:16:53.942 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:renv` matches labels `renv,process_medium` for process with name BACANNOT:CREATE_SQL Feb-16 15:16:53.943 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm Feb-16 15:16:53.943 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm' Feb-16 15:16:53.970 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `jbrowse,process_low` for process with name BACANNOT:JBROWSE Feb-16 15:16:53.971 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:jbrowse` matches labels `jbrowse,process_low` for process with name BACANNOT:JBROWSE Feb-16 15:16:53.972 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm Feb-16 15:16:53.972 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm' Feb-16 15:16:54.007 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_medium` matches labels `renv,process_medium` for process with name BACANNOT:REPORT Feb-16 15:16:54.007 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:renv` matches labels `renv,process_medium` for process with name BACANNOT:REPORT Feb-16 15:16:54.008 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm Feb-16 15:16:54.008 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm' Feb-16 15:16:54.041 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_medium` matches labels `python,process_medium` for process with name BACANNOT:SUMMARY Feb-16 15:16:54.041 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:python` matches labels `python,process_medium` for process with name BACANNOT:SUMMARY Feb-16 15:16:54.042 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm Feb-16 15:16:54.042 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm' Feb-16 15:16:54.051 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `misc,process_low` for process with name BACANNOT:MERGE_SUMMARIES Feb-16 15:16:54.052 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:db_download|db_tools|misc` matches labels `misc,process_low` for process with name BACANNOT:MERGE_SUMMARIES Feb-16 15:16:54.052 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm Feb-16 15:16:54.052 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm' Feb-16 15:16:54.060 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:process_low` matches labels `perl,process_low` for process with name BACANNOT:CIRCOS Feb-16 15:16:54.060 [main] DEBUG nextflow.script.ProcessConfig - Config settings `withLabel:perl` matches labels `perl,process_low` for process with name BACANNOT:CIRCOS Feb-16 15:16:54.061 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: slurm Feb-16 15:16:54.061 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'slurm' Feb-16 15:16:54.063 [main] DEBUG nextflow.Session - Workflow process names [dsl2]: BACANNOT:PROKKA, JBROWSE, ANTISMASH_DB, MERGE_SUMMARIES, VFDB, PLASMIDFINDER_DB, VFDB_DB, PLATON_DB, BACANNOT:DIGIS, GET_NCBI_PROTEIN, VICTORS_DB, SUMMARY, ARGMINER_DB, BACANNOT:PLATON, BACANNOT:DRAW_GIS, PROKKA, BACANNOT:MERGE_ANNOTATIONS, BAKTA, GFF2GBK, ARGMINER, PHIGARO, PLATON, BACANNOT:VICTORS, PROKKA_DB, AMRFINDER_DB, BACANNOT:MLST, BACANNOT:SUMMARY, MERGE_ANNOTATIONS, VICTORS, BARRNAP, BACANNOT:CALL_METHYLATION, PHAST_DB, KOFAMSCAN_DB, BACANNOT:VFDB, BACANNOT:CIRCOS, BACANNOT:JBROWSE, BACANNOT:PHAST, PHISPY, AMRFINDER, CUSTOM_DATABASE, CARD_RGI, BACANNOT:PHISPY, BACANNOT:COMPUTE_GC, BACANNOT:AMRFINDER, CIRCOS, BACANNOT:FLYE, ICEBERG, DRAW_GIS, KOFAMSCAN, UNICYCLER, BACANNOT:REFSEQ_MASHER, KEGG_DECODER, BACANNOT:KEGG_DECODER, BACANNOT:ANTISMASH, CUSTOM_DATABASE_REPORT, ICEBERG_DB, SEQUENCESERVER, BACANNOT:RESFINDER, BACANNOT:UNICYCLER, BACANNOT:ICEBERG, BACANNOT:MERGE_SUMMARIES, ANTISMASH, CALL_METHYLATION, COMPUTE_GC, ISLANDPATH, CARD_DB, RESFINDER_DB, BACANNOT:ARGMINER, PHAST, PHIGARO_DB, MLST, BACANNOT:CREATE_SQL, BACANNOT:BARRNAP, BACANNOT:ISLANDPATH, REPORT, DIGIS, BACANNOT:PLASMIDFINDER, CREATE_SQL, BACANNOT:SEQUENCESERVER, FLYE, BACANNOT:REPORT, MLST_DB, RESFINDER, BACANNOT:PHIGARO, REFSEQ_MASHER, BACANNOT:CARD_RGI, PLASMIDFINDER, BACANNOT:KOFAMSCAN, BACANNOT:GFF2GBK Feb-16 15:16:54.067 [main] DEBUG nextflow.Session - Ignite dataflow network (40) Feb-16 15:16:54.068 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > BACANNOT:UNICYCLER Feb-16 15:16:54.068 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > BACANNOT:FLYE Feb-16 15:16:54.069 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > BACANNOT:PROKKA Feb-16 15:16:54.069 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > BACANNOT:MLST Feb-16 15:16:54.069 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > BACANNOT:BARRNAP Feb-16 15:16:54.069 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > BACANNOT:COMPUTE_GC Feb-16 15:16:54.069 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > BACANNOT:KOFAMSCAN Feb-16 15:16:54.069 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > BACANNOT:KEGG_DECODER Feb-16 15:16:54.069 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > BACANNOT:PLASMIDFINDER Feb-16 15:16:54.069 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > BACANNOT:PLATON Feb-16 15:16:54.069 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > BACANNOT:ISLANDPATH Feb-16 15:16:54.069 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > BACANNOT:VFDB Feb-16 15:16:54.070 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > BACANNOT:VICTORS Feb-16 15:16:54.070 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > BACANNOT:PHAST Feb-16 15:16:54.070 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > BACANNOT:PHIGARO Feb-16 15:16:54.072 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > BACANNOT:PHISPY Feb-16 15:16:54.072 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > BACANNOT:ICEBERG Feb-16 15:16:54.073 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > BACANNOT:AMRFINDER Feb-16 15:16:54.073 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > BACANNOT:CARD_RGI Feb-16 15:16:54.073 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > BACANNOT:ARGMINER Feb-16 15:16:54.073 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > BACANNOT:RESFINDER Feb-16 15:16:54.073 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > BACANNOT:CALL_METHYLATION Feb-16 15:16:54.074 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > BACANNOT:REFSEQ_MASHER Feb-16 15:16:54.074 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > BACANNOT:DIGIS Feb-16 15:16:54.074 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > BACANNOT:ANTISMASH Feb-16 15:16:54.074 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > BACANNOT:SEQUENCESERVER Feb-16 15:16:54.074 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > BACANNOT:MERGE_ANNOTATIONS Feb-16 15:16:54.075 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > BACANNOT:DRAW_GIS Feb-16 15:16:54.075 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > BACANNOT:GFF2GBK Feb-16 15:16:54.075 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > BACANNOT:CREATE_SQL Feb-16 15:16:54.075 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > BACANNOT:JBROWSE Feb-16 15:16:54.076 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > BACANNOT:REPORT Feb-16 15:16:54.076 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > BACANNOT:SUMMARY Feb-16 15:16:54.076 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > BACANNOT:MERGE_SUMMARIES Feb-16 15:16:54.077 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > BACANNOT:CIRCOS Feb-16 15:16:54.077 [main] DEBUG nextflow.script.ScriptRunner - > Await termination Feb-16 15:16:54.077 [main] DEBUG nextflow.Session - Session await Feb-16 15:16:54.206 [Actor Thread 24] DEBUG nextflow.sort.BigSort - Sort completed -- entries: 2; slices: 1; internal sort time: 0.016 s; external sort time: 0.002 s; total time: 0.018 s Feb-16 15:16:54.207 [Actor Thread 24] DEBUG nextflow.file.FileCollector - >> temp file exists? true Feb-16 15:16:54.247 [Actor Thread 24] DEBUG nextflow.file.FileCollector - Retrieved cached collect-files from: /tmp/1e625c5b4bfeb84cddae1f1408b67102.collect-file -- cached files: [/home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/tmp/c6/eccb926d0bd45e4826676f40e3bfa0/samples.csv] Feb-16 15:16:54.262 [Actor Thread 24] DEBUG nextflow.file.FileCollector - Deleting file collector temp dir: /tmp/nxf-14034631431863164103 Feb-16 15:16:54.832 [Actor Thread 24] DEBUG nextflow.container.SingularityCache - Singularity found local store for image=docker://fmalmeida/bacannot:v3.2_perlenv; path=/home/ktest/share/test/WGS/BAC_ANNOT/cache_dir/singularity/fmalmeida-bacannot-v3.2_perlenv.img Feb-16 15:16:55.147 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process BACANNOT:PROKKA (2212S024__2) > jobId: 12; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/fa/afc6ef884486678df3c676c164f750 Feb-16 15:16:55.147 [Task submitter] INFO nextflow.Session - [fa/afc6ef] Submitted process > BACANNOT:PROKKA (2212S024__2) Feb-16 15:16:55.180 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process BACANNOT:PROKKA (2212S023__1) > jobId: 13; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/df/c724e20e26b392027e449572260f8d Feb-16 15:16:55.180 [Task submitter] INFO nextflow.Session - [df/c724e2] Submitted process > BACANNOT:PROKKA (2212S023__1) Feb-16 15:21:58.626 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor slurm > tasks to be completed: 2 -- submitted tasks are shown below ~> TaskHandler[jobId: 12; id: 2; name: BACANNOT:PROKKA (2212S024__2); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/fa/afc6ef884486678df3c676c164f750 started: 1676535418616; exited: -; ] ~> TaskHandler[jobId: 13; id: 1; name: BACANNOT:PROKKA (2212S023__1); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/df/c724e20e26b392027e449572260f8d started: 1676535418646; exited: -; ] Feb-16 15:22:58.633 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[jobId: 12; id: 2; name: BACANNOT:PROKKA (2212S024__2); status: COMPLETED; exit: 0; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/fa/afc6ef884486678df3c676c164f750 started: 1676535418616; exited: 2023-02-16T08:22:42.207687Z; ] Feb-16 15:22:58.728 [Task monitor] DEBUG nextflow.util.ThreadPoolBuilder - Creating thread pool 'FileTransfer' minSize=4; maxSize=4; workQueue=LinkedBlockingQueue[10000]; allowCoreThreadTimeout=false Feb-16 15:22:58.875 [Actor Thread 4] DEBUG nextflow.container.SingularityCache - Singularity found local store for image=docker://fmalmeida/bacannot:v3.2_pyenv; path=/home/ktest/share/test/WGS/BAC_ANNOT/cache_dir/singularity/fmalmeida-bacannot-v3.2_pyenv.img Feb-16 15:22:58.875 [Actor Thread 5] DEBUG nextflow.container.SingularityCache - Singularity found local store for image=docker://fmalmeida/bacannot:v3.2_misc; path=/home/ktest/share/test/WGS/BAC_ANNOT/cache_dir/singularity/fmalmeida-bacannot-v3.2_misc.img Feb-16 15:22:58.875 [Actor Thread 42] DEBUG nextflow.container.SingularityCache - Singularity found local store for image=docker://fmalmeida/bacannot:server; path=/home/ktest/share/test/WGS/BAC_ANNOT/cache_dir/singularity/fmalmeida-bacannot-server.img Feb-16 15:22:59.564 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process BACANNOT:BARRNAP (2212S024__2) > jobId: 14; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/95/286c52c94eaf57c3cbec946baba46e Feb-16 15:22:59.564 [Task submitter] INFO nextflow.Session - [95/286c52] Submitted process > BACANNOT:BARRNAP (2212S024__2) Feb-16 15:22:59.662 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process BACANNOT:VFDB (2212S024__2) > jobId: 15; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/2f/7f3aae948947335801b6fb0881950a Feb-16 15:22:59.663 [Task submitter] INFO nextflow.Session - [2f/7f3aae] Submitted process > BACANNOT:VFDB (2212S024__2) Feb-16 15:22:59.705 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process BACANNOT:PLASMIDFINDER (2212S024__2) > jobId: 16; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/7c/1cdb1885393c29abd0bb673586ed7f Feb-16 15:22:59.705 [Task submitter] INFO nextflow.Session - [7c/1cdb18] Submitted process > BACANNOT:PLASMIDFINDER (2212S024__2) Feb-16 15:22:59.748 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process BACANNOT:MLST (2212S024__2) > jobId: 17; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/2f/0baea6b5d7949e5f3bbb58868d9679 Feb-16 15:22:59.748 [Task submitter] INFO nextflow.Session - [2f/0baea6] Submitted process > BACANNOT:MLST (2212S024__2) Feb-16 15:22:59.781 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process BACANNOT:SEQUENCESERVER (2212S024__2) > jobId: 18; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/94/08f86ba5257d445c200dfdc171042e Feb-16 15:22:59.781 [Task submitter] INFO nextflow.Session - [94/08f86b] Submitted process > BACANNOT:SEQUENCESERVER (2212S024__2) Feb-16 15:22:59.846 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process BACANNOT:DIGIS (2212S024__2) > jobId: 19; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/2e/75207dae77a6a35f2cde0a1402f765 Feb-16 15:22:59.846 [Task submitter] INFO nextflow.Session - [2e/75207d] Submitted process > BACANNOT:DIGIS (2212S024__2) Feb-16 15:22:59.876 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process BACANNOT:PHISPY (2212S024__2) > jobId: 20; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/a4/4c2fc15334a0653630d8e50f8b445c Feb-16 15:22:59.876 [Task submitter] INFO nextflow.Session - [a4/4c2fc1] Submitted process > BACANNOT:PHISPY (2212S024__2) Feb-16 15:22:59.912 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process BACANNOT:KOFAMSCAN (2212S024__2) > jobId: 21; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/be/eef7a60bb5134bbf96f76073beb15f Feb-16 15:22:59.912 [Task submitter] INFO nextflow.Session - [be/eef7a6] Submitted process > BACANNOT:KOFAMSCAN (2212S024__2) Feb-16 15:22:59.965 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process BACANNOT:PHAST (2212S024__2) > jobId: 22; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/ad/196b6cfd3b96718ec5c5dc1579be4e Feb-16 15:22:59.965 [Task submitter] INFO nextflow.Session - [ad/196b6c] Submitted process > BACANNOT:PHAST (2212S024__2) Feb-16 15:22:59.990 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process BACANNOT:COMPUTE_GC (2212S024__2) > jobId: 23; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/f4/9b727fecc09ad70ced33d60b12f617 Feb-16 15:22:59.990 [Task submitter] INFO nextflow.Session - [f4/9b727f] Submitted process > BACANNOT:COMPUTE_GC (2212S024__2) Feb-16 15:23:00.013 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process BACANNOT:REFSEQ_MASHER (2212S024__2) > jobId: 24; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/42/6f21dd7e7c31af21153fa0c13200ca Feb-16 15:23:00.014 [Task submitter] INFO nextflow.Session - [42/6f21dd] Submitted process > BACANNOT:REFSEQ_MASHER (2212S024__2) Feb-16 15:23:00.037 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process BACANNOT:PLATON (2212S024__2) > jobId: 25; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/c3/e02b485f8898cbcacbf705bc064e93 Feb-16 15:23:00.037 [Task submitter] INFO nextflow.Session - [c3/e02b48] Submitted process > BACANNOT:PLATON (2212S024__2) Feb-16 15:23:00.064 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process BACANNOT:ICEBERG (2212S024__2) > jobId: 26; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/6e/f70f6822f65e5be864ac63b2554ca6 Feb-16 15:23:00.064 [Task submitter] INFO nextflow.Session - [6e/f70f68] Submitted process > BACANNOT:ICEBERG (2212S024__2) Feb-16 15:23:00.097 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process BACANNOT:ARGMINER (2212S024__2) > jobId: 27; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/51/988fefe222d74d2916071e1dfc16fb Feb-16 15:23:00.097 [Task submitter] INFO nextflow.Session - [51/988fef] Submitted process > BACANNOT:ARGMINER (2212S024__2) Feb-16 15:23:00.121 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process BACANNOT:AMRFINDER (2212S024__2) > jobId: 28; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/5f/c4e0d74e53538f9688840066bd0102 Feb-16 15:23:00.121 [Task submitter] INFO nextflow.Session - [5f/c4e0d7] Submitted process > BACANNOT:AMRFINDER (2212S024__2) Feb-16 15:23:00.141 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process BACANNOT:ISLANDPATH (2212S024__2) > jobId: 29; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/77/2963fb1b4baffbac164aa37f08b69f Feb-16 15:23:00.142 [Task submitter] INFO nextflow.Session - [77/2963fb] Submitted process > BACANNOT:ISLANDPATH (2212S024__2) Feb-16 15:23:00.169 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process BACANNOT:ANTISMASH (2212S024__2) > jobId: 30; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/cb/641ed0a5098114f6e098c1f1e1b168 Feb-16 15:23:00.169 [Task submitter] INFO nextflow.Session - [cb/641ed0] Submitted process > BACANNOT:ANTISMASH (2212S024__2) Feb-16 15:23:00.201 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process BACANNOT:PHIGARO (2212S024__2) > jobId: 31; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/0f/673427318795ddff99e9d8136b9e9b Feb-16 15:23:00.201 [Task submitter] INFO nextflow.Session - [0f/673427] Submitted process > BACANNOT:PHIGARO (2212S024__2) Feb-16 15:23:00.236 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process BACANNOT:RESFINDER (2212S024__2) > jobId: 32; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/65/7d5e96e37e1fe9753318f57ca84cd9 Feb-16 15:23:00.236 [Task submitter] INFO nextflow.Session - [65/7d5e96] Submitted process > BACANNOT:RESFINDER (2212S024__2) Feb-16 15:23:00.262 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process BACANNOT:CARD_RGI (2212S024__2) > jobId: 33; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/54/25d0af1abe9168673370bdc4c43c2a Feb-16 15:23:00.262 [Task submitter] INFO nextflow.Session - [54/25d0af] Submitted process > BACANNOT:CARD_RGI (2212S024__2) Feb-16 15:23:00.290 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process BACANNOT:VICTORS (2212S024__2) > jobId: 34; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/d7/4fb43d51cae03164d9cf08f879f3c7 Feb-16 15:23:00.290 [Task submitter] INFO nextflow.Session - [d7/4fb43d] Submitted process > BACANNOT:VICTORS (2212S024__2) Feb-16 15:23:08.630 [Task monitor] DEBUG nextflow.file.FileHelper - NFS path (true): /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache Feb-16 15:23:08.899 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[jobId: 13; id: 1; name: BACANNOT:PROKKA (2212S023__1); status: COMPLETED; exit: 0; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/df/c724e20e26b392027e449572260f8d started: 1676535418646; exited: 2023-02-16T08:22:42.206687Z; ] Feb-16 15:23:13.549 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process BACANNOT:REFSEQ_MASHER (2212S023__1) > jobId: 35; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/0c/16e812c9471f4da2c69669ec9c121c Feb-16 15:23:13.549 [Task submitter] INFO nextflow.Session - [0c/16e812] Submitted process > BACANNOT:REFSEQ_MASHER (2212S023__1) Feb-16 15:23:13.607 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process BACANNOT:BARRNAP (2212S023__1) > jobId: 36; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/30/e824f38ce4ca30152316c40d3f1c13 Feb-16 15:23:13.607 [Task submitter] INFO nextflow.Session - [30/e824f3] Submitted process > BACANNOT:BARRNAP (2212S023__1) Feb-16 15:23:13.631 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process BACANNOT:MLST (2212S023__1) > jobId: 37; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/7b/b0dad6533867d83271090e4c27b735 Feb-16 15:23:13.631 [Task submitter] INFO nextflow.Session - [7b/b0dad6] Submitted process > BACANNOT:MLST (2212S023__1) Feb-16 15:23:14.389 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process BACANNOT:PLATON (2212S023__1) > jobId: 38; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/60/34ff1b88301221f083c34288cd0f49 Feb-16 15:23:14.389 [Task submitter] INFO nextflow.Session - [60/34ff1b] Submitted process > BACANNOT:PLATON (2212S023__1) Feb-16 15:23:14.411 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process BACANNOT:SEQUENCESERVER (2212S023__1) > jobId: 39; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/00/016abdf60f75bb454acbd969066c1d Feb-16 15:23:14.411 [Task submitter] INFO nextflow.Session - [00/016abd] Submitted process > BACANNOT:SEQUENCESERVER (2212S023__1) Feb-16 15:23:14.432 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process BACANNOT:DIGIS (2212S023__1) > jobId: 40; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/c5/880d3c863b7874edd99dd1372507d6 Feb-16 15:23:14.432 [Task submitter] INFO nextflow.Session - [c5/880d3c] Submitted process > BACANNOT:DIGIS (2212S023__1) Feb-16 15:23:14.522 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process BACANNOT:ISLANDPATH (2212S023__1) > jobId: 41; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/48/9e4a0f3bee18397bbb5e3bd1e68e64 Feb-16 15:23:14.522 [Task submitter] INFO nextflow.Session - [48/9e4a0f] Submitted process > BACANNOT:ISLANDPATH (2212S023__1) Feb-16 15:23:14.546 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process BACANNOT:PHIGARO (2212S023__1) > jobId: 42; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/ec/2c0086e0a7bf9d4a882c9c8fd6c750 Feb-16 15:23:14.546 [Task submitter] INFO nextflow.Session - [ec/2c0086] Submitted process > BACANNOT:PHIGARO (2212S023__1) Feb-16 15:23:14.568 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process BACANNOT:PHISPY (2212S023__1) > jobId: 43; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/37/fe02d7c58bfb3c7024d5e3d9459fad Feb-16 15:23:14.568 [Task submitter] INFO nextflow.Session - [37/fe02d7] Submitted process > BACANNOT:PHISPY (2212S023__1) Feb-16 15:23:14.738 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process BACANNOT:ICEBERG (2212S023__1) > jobId: 44; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/00/00e15911cc443b500dd2fc52e0179d Feb-16 15:23:14.738 [Task submitter] INFO nextflow.Session - [00/00e159] Submitted process > BACANNOT:ICEBERG (2212S023__1) Feb-16 15:23:14.760 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process BACANNOT:COMPUTE_GC (2212S023__1) > jobId: 45; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/76/d37efff9a495ba008edeb2e1157d74 Feb-16 15:23:14.760 [Task submitter] INFO nextflow.Session - [76/d37eff] Submitted process > BACANNOT:COMPUTE_GC (2212S023__1) Feb-16 15:23:14.786 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process BACANNOT:PHAST (2212S023__1) > jobId: 46; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/59/4273852a983be18a7ea216564e88f7 Feb-16 15:23:14.786 [Task submitter] INFO nextflow.Session - [59/427385] Submitted process > BACANNOT:PHAST (2212S023__1) Feb-16 15:23:14.806 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process BACANNOT:KOFAMSCAN (2212S023__1) > jobId: 47; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/cc/0653046d127916333b6c4e38347e48 Feb-16 15:23:14.806 [Task submitter] INFO nextflow.Session - [cc/065304] Submitted process > BACANNOT:KOFAMSCAN (2212S023__1) Feb-16 15:23:14.826 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process BACANNOT:PLASMIDFINDER (2212S023__1) > jobId: 48; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/3a/5fd27125eddacafef86f63d8ab48f2 Feb-16 15:23:14.826 [Task submitter] INFO nextflow.Session - [3a/5fd271] Submitted process > BACANNOT:PLASMIDFINDER (2212S023__1) Feb-16 15:23:14.847 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process BACANNOT:AMRFINDER (2212S023__1) > jobId: 49; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/3e/76d5e80fe74646efdbe54565cd88ff Feb-16 15:23:14.848 [Task submitter] INFO nextflow.Session - [3e/76d5e8] Submitted process > BACANNOT:AMRFINDER (2212S023__1) Feb-16 15:23:17.051 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process BACANNOT:ARGMINER (2212S023__1) > jobId: 50; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/4c/5eb9d33a679a76a86230b6c48ccac0 Feb-16 15:23:17.051 [Task submitter] INFO nextflow.Session - [4c/5eb9d3] Submitted process > BACANNOT:ARGMINER (2212S023__1) Feb-16 15:23:17.074 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process BACANNOT:RESFINDER (2212S023__1) > jobId: 51; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/b0/5ec9ade7953409369b3b08d03af2b8 Feb-16 15:23:17.074 [Task submitter] INFO nextflow.Session - [b0/5ec9ad] Submitted process > BACANNOT:RESFINDER (2212S023__1) Feb-16 15:23:17.096 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process BACANNOT:VICTORS (2212S023__1) > jobId: 52; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/24/ba54c42037899cc0d1c378dbc67153 Feb-16 15:23:17.096 [Task submitter] INFO nextflow.Session - [24/ba54c4] Submitted process > BACANNOT:VICTORS (2212S023__1) Feb-16 15:23:17.119 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process BACANNOT:ANTISMASH (2212S023__1) > jobId: 53; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/e6/2c9d022ed313c4744a523a677042a0 Feb-16 15:23:17.119 [Task submitter] INFO nextflow.Session - [e6/2c9d02] Submitted process > BACANNOT:ANTISMASH (2212S023__1) Feb-16 15:23:17.141 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process BACANNOT:CARD_RGI (2212S023__1) > jobId: 54; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/88/17179fbdb0fc49ca07c943b0dcb8a3 Feb-16 15:23:17.141 [Task submitter] INFO nextflow.Session - [88/17179f] Submitted process > BACANNOT:CARD_RGI (2212S023__1) Feb-16 15:23:17.160 [Task submitter] DEBUG nextflow.executor.GridTaskHandler - [SLURM] submitted process BACANNOT:VFDB (2212S023__1) > jobId: 55; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/78/145c152f758fc1f565c782725d3ff0 Feb-16 15:23:17.160 [Task submitter] INFO nextflow.Session - [78/145c15] Submitted process > BACANNOT:VFDB (2212S023__1) Feb-16 15:23:33.635 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[jobId: 14; id: 3; name: BACANNOT:BARRNAP (2212S024__2); status: COMPLETED; exit: 0; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/95/286c52c94eaf57c3cbec946baba46e started: 1676535783645; exited: 2023-02-16T08:23:07.883655Z; ] Feb-16 15:23:33.659 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[jobId: 15; id: 21; name: BACANNOT:VFDB (2212S024__2); status: COMPLETED; exit: 0; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/2f/7f3aae948947335801b6fb0881950a started: 1676535783650; exited: 2023-02-16T08:23:18.225642Z; ] Feb-16 15:23:33.891 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[jobId: 17; id: 17; name: BACANNOT:MLST (2212S024__2); status: COMPLETED; exit: 0; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/2f/0baea6b5d7949e5f3bbb58868d9679 started: 1676535783657; exited: 2023-02-16T08:23:06.879656Z; ] Feb-16 15:23:33.895 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `BACANNOT:MLST (2212S024__2)` is unable to find [UnixPath]: `/home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/2f/0baea6b5d7949e5f3bbb58868d9679/2212S024__2_novel_alleles.fasta` (pattern: `2212S024__2_novel_alleles.fasta`) Feb-16 15:23:34.029 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process BACANNOT:MLST > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Feb-16 15:23:34.035 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[jobId: 18; id: 24; name: BACANNOT:SEQUENCESERVER (2212S024__2); status: COMPLETED; exit: 0; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/94/08f86ba5257d445c200dfdc171042e started: 1676535783660; exited: 2023-02-16T08:23:23.116636Z; ] Feb-16 15:23:34.264 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[jobId: 19; id: 16; name: BACANNOT:DIGIS (2212S024__2); status: COMPLETED; exit: 1; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/2e/75207dae77a6a35f2cde0a1402f765 started: 1676535783663; exited: 2023-02-16T08:23:30.675626Z; ] Feb-16 15:23:34.292 [Task monitor] ERROR nextflow.processor.TaskProcessor - Error executing process > 'BACANNOT:DIGIS (2212S024__2)' Caused by: Process `BACANNOT:DIGIS (2212S024__2)` terminated with an error exit status (1) Command executed: # activate env source activate digIS # run digIS python3 $(which digIS_search.py) -i 2212S024__2.fna -g 2212S024__2.gbk -o digIS # deactivate env conda deactivate # parse digIS to get nucleotide and aminoacide # also put ids in uppercase # required for annotation merging and sqldb ## dir for fastas mkdir -p digIS/results/fastas ; ## save info in gff sed \ -e 's/id=/ID=/g' \ digIS/results/2212S024__2.gff > 2212S024__2_IS.gff ; ## get nucl sequences gff-toolbox \ convert \ -i 2212S024__2_IS.gff \ -f fasta-nt \ --fasta 2212S024__2.fna \ --fasta_features transposable_element > digIS/results/fastas/2212S024__2_IS.fa ; ## get prot sequences gff-toolbox \ convert \ -i 2212S024__2_IS.gff \ -f fasta-aa \ --fasta 2212S024__2.fna \ --fasta_features transposable_element > digIS/results/fastas/2212S024__2_IS.faa ; Command exit status: 1 Command output: (empty) Command error: Traceback (most recent call last): File "/opt/conda/envs/digIS/lib/python3.9/site-packages/Bio/File.py", line 71, in as_handle with open(handleish, mode, **kwargs) as fp: TypeError: expected str, bytes or os.PathLike object, not TextIOWrapper During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/work/digIS/digIS_search.py", line 25, in digIS = digISMultifasta(digIS_conf) File "/work/digIS/src/search_tool/digISMultifasta.py", line 16, in __init__ self.genbank_dict = read_gb(config.genbank_file) if config.genbank_file else OrderedDict() File "/work/digIS/src/common/genbank.py", line 11, in read_gb for genome in SeqIO.parse(filename, "genbank"): File "/opt/conda/envs/digIS/lib/python3.9/site-packages/Bio/SeqIO/Interfaces.py", line 68, in __next__ return next(self.records) File "/opt/conda/envs/digIS/lib/python3.9/site-packages/Bio/GenBank/Scanner.py", line 517, in parse_records record = self.parse(handle, do_features) File "/opt/conda/envs/digIS/lib/python3.9/site-packages/Bio/GenBank/Scanner.py", line 500, in parse if self.feed(handle, consumer, do_features): File "/opt/conda/envs/digIS/lib/python3.9/site-packages/Bio/GenBank/Scanner.py", line 466, in feed self._feed_first_line(consumer, self.line) File "/opt/conda/envs/digIS/lib/python3.9/site-packages/Bio/GenBank/Scanner.py", line 1583, in _feed_first_line raise ValueError("Did not recognise the LOCUS line layout:\n" + line) ValueError: Did not recognise the LOCUS line layout: LOCUS 1_length=1117884_depth=0.99x1117884 bp DNA linear 16-FEB-2023 Work dir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/2e/75207dae77a6a35f2cde0a1402f765 Tip: you can try to figure out what's wrong by changing to the process work dir and showing the script file named `.command.sh` Feb-16 15:23:34.299 [Task monitor] INFO nextflow.Session - Execution cancelled -- Finishing pending tasks before exit Feb-16 15:23:34.307 [main] DEBUG nextflow.Session - Session await > all process finished Feb-16 15:23:34.318 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[jobId: 20; id: 12; name: BACANNOT:PHISPY (2212S024__2); status: COMPLETED; exit: 1; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/a4/4c2fc15334a0653630d8e50f8b445c started: 1676535783666; exited: 2023-02-16T08:23:14.746646Z; ] Feb-16 15:23:34.323 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[jobId: 23; id: 10; name: BACANNOT:COMPUTE_GC (2212S024__2); status: COMPLETED; exit: 0; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/f4/9b727fecc09ad70ced33d60b12f617 started: 1676535783675; exited: 2023-02-16T08:23:07.830655Z; ] Feb-16 15:23:34.329 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[jobId: 24; id: 14; name: BACANNOT:REFSEQ_MASHER (2212S024__2); status: COMPLETED; exit: 0; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/42/6f21dd7e7c31af21153fa0c13200ca started: 1676535783678; exited: 2023-02-16T08:23:25.603633Z; ] Feb-16 15:23:43.701 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[jobId: 35; id: 26; name: BACANNOT:REFSEQ_MASHER (2212S023__1); status: COMPLETED; exit: 0; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/0c/16e812c9471f4da2c69669ec9c121c started: 1676535823696; exited: 2023-02-16T08:23:31.680625Z; ] Feb-16 15:23:43.714 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[jobId: 36; id: 32; name: BACANNOT:BARRNAP (2212S023__1); status: COMPLETED; exit: 0; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/30/e824f38ce4ca30152316c40d3f1c13 started: 1676535823710; exited: 2023-02-16T08:23:24.260634Z; ] Feb-16 15:23:43.953 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[jobId: 37; id: 42; name: BACANNOT:MLST (2212S023__1); status: COMPLETED; exit: 0; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/7b/b0dad6533867d83271090e4c27b735 started: 1676535798635; exited: 2023-02-16T08:23:18.679641Z; ] Feb-16 15:23:43.956 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `BACANNOT:MLST (2212S023__1)` is unable to find [UnixPath]: `/home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/7b/b0dad6533867d83271090e4c27b735/2212S023__1_novel_alleles.fasta` (pattern: `2212S023__1_novel_alleles.fasta`) Feb-16 15:23:43.957 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process BACANNOT:MLST > Skipping output binding because one or more optional files are missing: fileoutparam<2:1> Feb-16 15:23:48.637 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[jobId: 39; id: 46; name: BACANNOT:SEQUENCESERVER (2212S023__1); status: COMPLETED; exit: 0; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/00/016abdf60f75bb454acbd969066c1d started: 1676535798643; exited: 2023-02-16T08:23:32.414624Z; ] Feb-16 15:23:48.652 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[jobId: 40; id: 31; name: BACANNOT:DIGIS (2212S023__1); status: COMPLETED; exit: 1; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/c5/880d3c863b7874edd99dd1372507d6 started: 1676535798645; exited: 2023-02-16T08:23:46.676606Z; ] Feb-16 15:23:48.656 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[jobId: 41; id: 33; name: BACANNOT:ISLANDPATH (2212S023__1); status: COMPLETED; exit: 0; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/48/9e4a0f3bee18397bbb5e3bd1e68e64 started: 1676535798648; exited: 2023-02-16T08:23:42.336612Z; ] Feb-16 15:23:48.793 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[jobId: 43; id: 25; name: BACANNOT:PHISPY (2212S023__1); status: COMPLETED; exit: 1; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/37/fe02d7c58bfb3c7024d5e3d9459fad started: 1676535798654; exited: 2023-02-16T08:23:41.385613Z; ] Feb-16 15:23:48.797 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[jobId: 45; id: 30; name: BACANNOT:COMPUTE_GC (2212S023__1); status: COMPLETED; exit: 0; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/76/d37efff9a495ba008edeb2e1157d74 started: 1676535798659; exited: 2023-02-16T08:23:28.285629Z; ] Feb-16 15:23:48.805 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[jobId: 50; id: 37; name: BACANNOT:ARGMINER (2212S023__1); status: COMPLETED; exit: 0; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/4c/5eb9d33a679a76a86230b6c48ccac0 started: 1676535800857; exited: 2023-02-16T08:23:32.958623Z; ] Feb-16 15:24:08.635 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[jobId: 16; id: 15; name: BACANNOT:PLASMIDFINDER (2212S024__2); status: COMPLETED; exit: 0; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/7c/1cdb1885393c29abd0bb673586ed7f started: 1676535783653; exited: 2023-02-16T08:23:42.312612Z; ] Feb-16 15:24:08.646 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[jobId: 22; id: 4; name: BACANNOT:PHAST (2212S024__2); status: COMPLETED; exit: 0; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/ad/196b6cfd3b96718ec5c5dc1579be4e started: 1676535783672; exited: 2023-02-16T08:23:40.949613Z; ] Feb-16 15:24:08.818 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[jobId: 29; id: 11; name: BACANNOT:ISLANDPATH (2212S024__2); status: COMPLETED; exit: 0; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/77/2963fb1b4baffbac164aa37f08b69f started: 1676535783693; exited: 2023-02-16T08:23:36.06962Z; ] Feb-16 15:24:08.968 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[jobId: 30; id: 8; name: BACANNOT:ANTISMASH (2212S024__2); status: COMPLETED; exit: 1; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/cb/641ed0a5098114f6e098c1f1e1b168 started: 1676535783696; exited: 2023-02-16T08:23:41.432613Z; ] Feb-16 15:24:08.974 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[jobId: 32; id: 23; name: BACANNOT:RESFINDER (2212S024__2); status: COMPLETED; exit: 0; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/65/7d5e96e37e1fe9753318f57ca84cd9 started: 1676535783702; exited: 2023-02-16T08:24:01.685588Z; ] Feb-16 15:24:23.644 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[jobId: 46; id: 40; name: BACANNOT:PHAST (2212S023__1); status: COMPLETED; exit: 0; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/59/4273852a983be18a7ea216564e88f7 started: 1676535798662; exited: 2023-02-16T08:23:52.688599Z; ] Feb-16 15:24:23.858 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[jobId: 51; id: 45; name: BACANNOT:RESFINDER (2212S023__1); status: COMPLETED; exit: 0; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/b0/5ec9ade7953409369b3b08d03af2b8 started: 1676535828840; exited: 2023-02-16T08:24:01.438588Z; ] Feb-16 15:24:23.866 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[jobId: 53; id: 28; name: BACANNOT:ANTISMASH (2212S023__1); status: COMPLETED; exit: 1; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/e6/2c9d022ed313c4744a523a677042a0 started: 1676535828846; exited: 2023-02-16T08:23:50.600601Z; ] Feb-16 15:25:13.663 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[jobId: 28; id: 5; name: BACANNOT:AMRFINDER (2212S024__2); status: COMPLETED; exit: 0; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/5f/c4e0d74e53538f9688840066bd0102 started: 1676535783690; exited: 2023-02-16T08:24:14.405572Z; ] Feb-16 15:25:28.642 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[jobId: 49; id: 35; name: BACANNOT:AMRFINDER (2212S023__1); status: COMPLETED; exit: 0; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/3e/76d5e80fe74646efdbe54565cd88ff started: 1676535800853; exited: 2023-02-16T08:24:28.861554Z; ] Feb-16 15:25:43.640 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[jobId: 33; id: 9; name: BACANNOT:CARD_RGI (2212S024__2); status: COMPLETED; exit: 0; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/54/25d0af1abe9168673370bdc4c43c2a started: 1676535783704; exited: 2023-02-16T08:25:27.500481Z; ] Feb-16 15:25:43.797 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `BACANNOT:CARD_RGI (2212S024__2)` is unable to find [UnixPath]: `/home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/54/25d0af1abe9168673370bdc4c43c2a/heatmap` (pattern: `heatmap`) Feb-16 15:25:43.801 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process BACANNOT:CARD_RGI > Skipping output binding because one or more optional files are missing: fileoutparam<3:1> Feb-16 15:25:43.801 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process BACANNOT:CARD_RGI > Skipping output binding because one or more optional files are missing: fileoutparam<4> Feb-16 15:25:58.641 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[jobId: 54; id: 36; name: BACANNOT:CARD_RGI (2212S023__1); status: COMPLETED; exit: 0; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/88/17179fbdb0fc49ca07c943b0dcb8a3 started: 1676535800941; exited: 2023-02-16T08:25:28.61248Z; ] Feb-16 15:25:59.110 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process `BACANNOT:CARD_RGI (2212S023__1)` is unable to find [UnixPath]: `/home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/88/17179fbdb0fc49ca07c943b0dcb8a3/heatmap` (pattern: `heatmap`) Feb-16 15:25:59.113 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process BACANNOT:CARD_RGI > Skipping output binding because one or more optional files are missing: fileoutparam<3:1> Feb-16 15:25:59.114 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Process BACANNOT:CARD_RGI > Skipping output binding because one or more optional files are missing: fileoutparam<4> Feb-16 15:26:58.643 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor slurm > tasks to be completed: 13 -- submitted tasks are shown below ~> TaskHandler[jobId: 21; id: 20; name: BACANNOT:KOFAMSCAN (2212S024__2); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/be/eef7a60bb5134bbf96f76073beb15f started: 1676535783669; exited: -; ] ~> TaskHandler[jobId: 25; id: 7; name: BACANNOT:PLATON (2212S024__2); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/c3/e02b485f8898cbcacbf705bc064e93 started: 1676535783682; exited: -; ] ~> TaskHandler[jobId: 26; id: 6; name: BACANNOT:ICEBERG (2212S024__2); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/6e/f70f6822f65e5be864ac63b2554ca6 started: 1676535783685; exited: -; ] ~> TaskHandler[jobId: 27; id: 19; name: BACANNOT:ARGMINER (2212S024__2); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/51/988fefe222d74d2916071e1dfc16fb started: 1676535783687; exited: -; ] ~> TaskHandler[jobId: 31; id: 13; name: BACANNOT:PHIGARO (2212S024__2); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/0f/673427318795ddff99e9d8136b9e9b started: 1676535783699; exited: -; ] ~> TaskHandler[jobId: 34; id: 18; name: BACANNOT:VICTORS (2212S024__2); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/d7/4fb43d51cae03164d9cf08f879f3c7 started: 1676535783707; exited: -; ] ~> TaskHandler[jobId: 38; id: 34; name: BACANNOT:PLATON (2212S023__1); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/60/34ff1b88301221f083c34288cd0f49 started: 1676535798640; exited: -; ] ~> TaskHandler[jobId: 42; id: 27; name: BACANNOT:PHIGARO (2212S023__1); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/ec/2c0086e0a7bf9d4a882c9c8fd6c750 started: 1676535798651; exited: -; ] ~> TaskHandler[jobId: 44; id: 38; name: BACANNOT:ICEBERG (2212S023__1); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/00/00e15911cc443b500dd2fc52e0179d started: 1676535798656; exited: -; ] ~> TaskHandler[jobId: 47; id: 39; name: BACANNOT:KOFAMSCAN (2212S023__1); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/cc/0653046d127916333b6c4e38347e48 started: 1676535798664; exited: -; ] .. remaining tasks omitted. Feb-16 15:27:08.798 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[jobId: 25; id: 7; name: BACANNOT:PLATON (2212S024__2); status: COMPLETED; exit: 0; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/c3/e02b485f8898cbcacbf705bc064e93 started: 1676535783682; exited: 2023-02-16T08:26:45.287385Z; ] Feb-16 15:27:08.857 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[jobId: 38; id: 34; name: BACANNOT:PLATON (2212S023__1); status: COMPLETED; exit: 0; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/60/34ff1b88301221f083c34288cd0f49 started: 1676535798640; exited: 2023-02-16T08:26:23.066413Z; ] Feb-16 15:30:23.658 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[jobId: 42; id: 27; name: BACANNOT:PHIGARO (2212S023__1); status: COMPLETED; exit: 0; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/ec/2c0086e0a7bf9d4a882c9c8fd6c750 started: 1676535798651; exited: 2023-02-16T08:30:22.087167Z; ] Feb-16 15:30:48.667 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[jobId: 31; id: 13; name: BACANNOT:PHIGARO (2212S024__2); status: COMPLETED; exit: 0; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/0f/673427318795ddff99e9d8136b9e9b started: 1676535783699; exited: 2023-02-16T08:30:19.027168Z; ] Feb-16 15:31:58.659 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor slurm > tasks to be completed: 9 -- submitted tasks are shown below ~> TaskHandler[jobId: 21; id: 20; name: BACANNOT:KOFAMSCAN (2212S024__2); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/be/eef7a60bb5134bbf96f76073beb15f started: 1676535783669; exited: -; ] ~> TaskHandler[jobId: 26; id: 6; name: BACANNOT:ICEBERG (2212S024__2); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/6e/f70f6822f65e5be864ac63b2554ca6 started: 1676535783685; exited: -; ] ~> TaskHandler[jobId: 27; id: 19; name: BACANNOT:ARGMINER (2212S024__2); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/51/988fefe222d74d2916071e1dfc16fb started: 1676535783687; exited: -; ] ~> TaskHandler[jobId: 34; id: 18; name: BACANNOT:VICTORS (2212S024__2); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/d7/4fb43d51cae03164d9cf08f879f3c7 started: 1676535783707; exited: -; ] ~> TaskHandler[jobId: 44; id: 38; name: BACANNOT:ICEBERG (2212S023__1); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/00/00e15911cc443b500dd2fc52e0179d started: 1676535798656; exited: -; ] ~> TaskHandler[jobId: 47; id: 39; name: BACANNOT:KOFAMSCAN (2212S023__1); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/cc/0653046d127916333b6c4e38347e48 started: 1676535798664; exited: -; ] ~> TaskHandler[jobId: 48; id: 29; name: BACANNOT:PLASMIDFINDER (2212S023__1); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/3a/5fd27125eddacafef86f63d8ab48f2 started: 1676535798667; exited: -; ] ~> TaskHandler[jobId: 52; id: 41; name: BACANNOT:VICTORS (2212S023__1); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/24/ba54c42037899cc0d1c378dbc67153 started: 1676535828843; exited: -; ] ~> TaskHandler[jobId: 55; id: 43; name: BACANNOT:VFDB (2212S023__1); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/78/145c152f758fc1f565c782725d3ff0 started: 1676535800946; exited: -; ] Feb-16 15:35:08.879 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[jobId: 21; id: 20; name: BACANNOT:KOFAMSCAN (2212S024__2); status: COMPLETED; exit: 0; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/be/eef7a60bb5134bbf96f76073beb15f started: 1676535783669; exited: 2023-02-16T08:34:27.094073Z; ] Feb-16 15:35:09.111 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[jobId: 47; id: 39; name: BACANNOT:KOFAMSCAN (2212S023__1); status: COMPLETED; exit: 0; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/cc/0653046d127916333b6c4e38347e48 started: 1676535798664; exited: 2023-02-16T08:34:50.593063Z; ] Feb-16 15:36:58.670 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor slurm > tasks to be completed: 7 -- submitted tasks are shown below ~> TaskHandler[jobId: 26; id: 6; name: BACANNOT:ICEBERG (2212S024__2); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/6e/f70f6822f65e5be864ac63b2554ca6 started: 1676535783685; exited: -; ] ~> TaskHandler[jobId: 27; id: 19; name: BACANNOT:ARGMINER (2212S024__2); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/51/988fefe222d74d2916071e1dfc16fb started: 1676535783687; exited: -; ] ~> TaskHandler[jobId: 34; id: 18; name: BACANNOT:VICTORS (2212S024__2); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/d7/4fb43d51cae03164d9cf08f879f3c7 started: 1676535783707; exited: -; ] ~> TaskHandler[jobId: 44; id: 38; name: BACANNOT:ICEBERG (2212S023__1); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/00/00e15911cc443b500dd2fc52e0179d started: 1676535798656; exited: -; ] ~> TaskHandler[jobId: 48; id: 29; name: BACANNOT:PLASMIDFINDER (2212S023__1); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/3a/5fd27125eddacafef86f63d8ab48f2 started: 1676535798667; exited: -; ] ~> TaskHandler[jobId: 52; id: 41; name: BACANNOT:VICTORS (2212S023__1); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/24/ba54c42037899cc0d1c378dbc67153 started: 1676535828843; exited: -; ] ~> TaskHandler[jobId: 55; id: 43; name: BACANNOT:VFDB (2212S023__1); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/78/145c152f758fc1f565c782725d3ff0 started: 1676535800946; exited: -; ] Feb-16 15:41:58.684 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor slurm > tasks to be completed: 7 -- submitted tasks are shown below ~> TaskHandler[jobId: 26; id: 6; name: BACANNOT:ICEBERG (2212S024__2); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/6e/f70f6822f65e5be864ac63b2554ca6 started: 1676535783685; exited: -; ] ~> TaskHandler[jobId: 27; id: 19; name: BACANNOT:ARGMINER (2212S024__2); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/51/988fefe222d74d2916071e1dfc16fb started: 1676535783687; exited: -; ] ~> TaskHandler[jobId: 34; id: 18; name: BACANNOT:VICTORS (2212S024__2); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/d7/4fb43d51cae03164d9cf08f879f3c7 started: 1676535783707; exited: -; ] ~> TaskHandler[jobId: 44; id: 38; name: BACANNOT:ICEBERG (2212S023__1); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/00/00e15911cc443b500dd2fc52e0179d started: 1676535798656; exited: -; ] ~> TaskHandler[jobId: 48; id: 29; name: BACANNOT:PLASMIDFINDER (2212S023__1); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/3a/5fd27125eddacafef86f63d8ab48f2 started: 1676535798667; exited: -; ] ~> TaskHandler[jobId: 52; id: 41; name: BACANNOT:VICTORS (2212S023__1); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/24/ba54c42037899cc0d1c378dbc67153 started: 1676535828843; exited: -; ] ~> TaskHandler[jobId: 55; id: 43; name: BACANNOT:VFDB (2212S023__1); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/78/145c152f758fc1f565c782725d3ff0 started: 1676535800946; exited: -; ] Feb-16 15:46:58.691 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor slurm > tasks to be completed: 7 -- submitted tasks are shown below ~> TaskHandler[jobId: 26; id: 6; name: BACANNOT:ICEBERG (2212S024__2); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/6e/f70f6822f65e5be864ac63b2554ca6 started: 1676535783685; exited: -; ] ~> TaskHandler[jobId: 27; id: 19; name: BACANNOT:ARGMINER (2212S024__2); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/51/988fefe222d74d2916071e1dfc16fb started: 1676535783687; exited: -; ] ~> TaskHandler[jobId: 34; id: 18; name: BACANNOT:VICTORS (2212S024__2); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/d7/4fb43d51cae03164d9cf08f879f3c7 started: 1676535783707; exited: -; ] ~> TaskHandler[jobId: 44; id: 38; name: BACANNOT:ICEBERG (2212S023__1); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/00/00e15911cc443b500dd2fc52e0179d started: 1676535798656; exited: -; ] ~> TaskHandler[jobId: 48; id: 29; name: BACANNOT:PLASMIDFINDER (2212S023__1); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/3a/5fd27125eddacafef86f63d8ab48f2 started: 1676535798667; exited: -; ] ~> TaskHandler[jobId: 52; id: 41; name: BACANNOT:VICTORS (2212S023__1); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/24/ba54c42037899cc0d1c378dbc67153 started: 1676535828843; exited: -; ] ~> TaskHandler[jobId: 55; id: 43; name: BACANNOT:VFDB (2212S023__1); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/78/145c152f758fc1f565c782725d3ff0 started: 1676535800946; exited: -; ] Feb-16 15:51:58.706 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor slurm > tasks to be completed: 7 -- submitted tasks are shown below ~> TaskHandler[jobId: 26; id: 6; name: BACANNOT:ICEBERG (2212S024__2); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/6e/f70f6822f65e5be864ac63b2554ca6 started: 1676535783685; exited: -; ] ~> TaskHandler[jobId: 27; id: 19; name: BACANNOT:ARGMINER (2212S024__2); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/51/988fefe222d74d2916071e1dfc16fb started: 1676535783687; exited: -; ] ~> TaskHandler[jobId: 34; id: 18; name: BACANNOT:VICTORS (2212S024__2); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/d7/4fb43d51cae03164d9cf08f879f3c7 started: 1676535783707; exited: -; ] ~> TaskHandler[jobId: 44; id: 38; name: BACANNOT:ICEBERG (2212S023__1); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/00/00e15911cc443b500dd2fc52e0179d started: 1676535798656; exited: -; ] ~> TaskHandler[jobId: 48; id: 29; name: BACANNOT:PLASMIDFINDER (2212S023__1); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/3a/5fd27125eddacafef86f63d8ab48f2 started: 1676535798667; exited: -; ] ~> TaskHandler[jobId: 52; id: 41; name: BACANNOT:VICTORS (2212S023__1); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/24/ba54c42037899cc0d1c378dbc67153 started: 1676535828843; exited: -; ] ~> TaskHandler[jobId: 55; id: 43; name: BACANNOT:VFDB (2212S023__1); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/78/145c152f758fc1f565c782725d3ff0 started: 1676535800946; exited: -; ] Feb-16 15:56:58.717 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor slurm > tasks to be completed: 7 -- submitted tasks are shown below ~> TaskHandler[jobId: 26; id: 6; name: BACANNOT:ICEBERG (2212S024__2); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/6e/f70f6822f65e5be864ac63b2554ca6 started: 1676535783685; exited: -; ] ~> TaskHandler[jobId: 27; id: 19; name: BACANNOT:ARGMINER (2212S024__2); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/51/988fefe222d74d2916071e1dfc16fb started: 1676535783687; exited: -; ] ~> TaskHandler[jobId: 34; id: 18; name: BACANNOT:VICTORS (2212S024__2); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/d7/4fb43d51cae03164d9cf08f879f3c7 started: 1676535783707; exited: -; ] ~> TaskHandler[jobId: 44; id: 38; name: BACANNOT:ICEBERG (2212S023__1); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/00/00e15911cc443b500dd2fc52e0179d started: 1676535798656; exited: -; ] ~> TaskHandler[jobId: 48; id: 29; name: BACANNOT:PLASMIDFINDER (2212S023__1); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/3a/5fd27125eddacafef86f63d8ab48f2 started: 1676535798667; exited: -; ] ~> TaskHandler[jobId: 52; id: 41; name: BACANNOT:VICTORS (2212S023__1); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/24/ba54c42037899cc0d1c378dbc67153 started: 1676535828843; exited: -; ] ~> TaskHandler[jobId: 55; id: 43; name: BACANNOT:VFDB (2212S023__1); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/78/145c152f758fc1f565c782725d3ff0 started: 1676535800946; exited: -; ] Feb-16 16:01:58.729 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor slurm > tasks to be completed: 7 -- submitted tasks are shown below ~> TaskHandler[jobId: 26; id: 6; name: BACANNOT:ICEBERG (2212S024__2); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/6e/f70f6822f65e5be864ac63b2554ca6 started: 1676535783685; exited: -; ] ~> TaskHandler[jobId: 27; id: 19; name: BACANNOT:ARGMINER (2212S024__2); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/51/988fefe222d74d2916071e1dfc16fb started: 1676535783687; exited: -; ] ~> TaskHandler[jobId: 34; id: 18; name: BACANNOT:VICTORS (2212S024__2); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/d7/4fb43d51cae03164d9cf08f879f3c7 started: 1676535783707; exited: -; ] ~> TaskHandler[jobId: 44; id: 38; name: BACANNOT:ICEBERG (2212S023__1); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/00/00e15911cc443b500dd2fc52e0179d started: 1676535798656; exited: -; ] ~> TaskHandler[jobId: 48; id: 29; name: BACANNOT:PLASMIDFINDER (2212S023__1); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/3a/5fd27125eddacafef86f63d8ab48f2 started: 1676535798667; exited: -; ] ~> TaskHandler[jobId: 52; id: 41; name: BACANNOT:VICTORS (2212S023__1); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/24/ba54c42037899cc0d1c378dbc67153 started: 1676535828843; exited: -; ] ~> TaskHandler[jobId: 55; id: 43; name: BACANNOT:VFDB (2212S023__1); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/78/145c152f758fc1f565c782725d3ff0 started: 1676535800946; exited: -; ] Feb-16 16:06:58.737 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor slurm > tasks to be completed: 7 -- submitted tasks are shown below ~> TaskHandler[jobId: 26; id: 6; name: BACANNOT:ICEBERG (2212S024__2); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/6e/f70f6822f65e5be864ac63b2554ca6 started: 1676535783685; exited: -; ] ~> TaskHandler[jobId: 27; id: 19; name: BACANNOT:ARGMINER (2212S024__2); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/51/988fefe222d74d2916071e1dfc16fb started: 1676535783687; exited: -; ] ~> TaskHandler[jobId: 34; id: 18; name: BACANNOT:VICTORS (2212S024__2); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/d7/4fb43d51cae03164d9cf08f879f3c7 started: 1676535783707; exited: -; ] ~> TaskHandler[jobId: 44; id: 38; name: BACANNOT:ICEBERG (2212S023__1); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/00/00e15911cc443b500dd2fc52e0179d started: 1676535798656; exited: -; ] ~> TaskHandler[jobId: 48; id: 29; name: BACANNOT:PLASMIDFINDER (2212S023__1); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/3a/5fd27125eddacafef86f63d8ab48f2 started: 1676535798667; exited: -; ] ~> TaskHandler[jobId: 52; id: 41; name: BACANNOT:VICTORS (2212S023__1); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/24/ba54c42037899cc0d1c378dbc67153 started: 1676535828843; exited: -; ] ~> TaskHandler[jobId: 55; id: 43; name: BACANNOT:VFDB (2212S023__1); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/78/145c152f758fc1f565c782725d3ff0 started: 1676535800946; exited: -; ] Feb-16 16:11:58.748 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor slurm > tasks to be completed: 7 -- submitted tasks are shown below ~> TaskHandler[jobId: 26; id: 6; name: BACANNOT:ICEBERG (2212S024__2); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/6e/f70f6822f65e5be864ac63b2554ca6 started: 1676535783685; exited: -; ] ~> TaskHandler[jobId: 27; id: 19; name: BACANNOT:ARGMINER (2212S024__2); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/51/988fefe222d74d2916071e1dfc16fb started: 1676535783687; exited: -; ] ~> TaskHandler[jobId: 34; id: 18; name: BACANNOT:VICTORS (2212S024__2); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/d7/4fb43d51cae03164d9cf08f879f3c7 started: 1676535783707; exited: -; ] ~> TaskHandler[jobId: 44; id: 38; name: BACANNOT:ICEBERG (2212S023__1); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/00/00e15911cc443b500dd2fc52e0179d started: 1676535798656; exited: -; ] ~> TaskHandler[jobId: 48; id: 29; name: BACANNOT:PLASMIDFINDER (2212S023__1); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/3a/5fd27125eddacafef86f63d8ab48f2 started: 1676535798667; exited: -; ] ~> TaskHandler[jobId: 52; id: 41; name: BACANNOT:VICTORS (2212S023__1); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/24/ba54c42037899cc0d1c378dbc67153 started: 1676535828843; exited: -; ] ~> TaskHandler[jobId: 55; id: 43; name: BACANNOT:VFDB (2212S023__1); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/78/145c152f758fc1f565c782725d3ff0 started: 1676535800946; exited: -; ] Feb-16 16:16:59.004 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor slurm > tasks to be completed: 7 -- submitted tasks are shown below ~> TaskHandler[jobId: 26; id: 6; name: BACANNOT:ICEBERG (2212S024__2); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/6e/f70f6822f65e5be864ac63b2554ca6 started: 1676535783685; exited: -; ] ~> TaskHandler[jobId: 27; id: 19; name: BACANNOT:ARGMINER (2212S024__2); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/51/988fefe222d74d2916071e1dfc16fb started: 1676535783687; exited: -; ] ~> TaskHandler[jobId: 34; id: 18; name: BACANNOT:VICTORS (2212S024__2); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/d7/4fb43d51cae03164d9cf08f879f3c7 started: 1676535783707; exited: -; ] ~> TaskHandler[jobId: 44; id: 38; name: BACANNOT:ICEBERG (2212S023__1); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/00/00e15911cc443b500dd2fc52e0179d started: 1676535798656; exited: -; ] ~> TaskHandler[jobId: 48; id: 29; name: BACANNOT:PLASMIDFINDER (2212S023__1); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/3a/5fd27125eddacafef86f63d8ab48f2 started: 1676535798667; exited: -; ] ~> TaskHandler[jobId: 52; id: 41; name: BACANNOT:VICTORS (2212S023__1); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/24/ba54c42037899cc0d1c378dbc67153 started: 1676535828843; exited: -; ] ~> TaskHandler[jobId: 55; id: 43; name: BACANNOT:VFDB (2212S023__1); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/78/145c152f758fc1f565c782725d3ff0 started: 1676535800946; exited: -; ] Feb-16 16:21:59.090 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor slurm > tasks to be completed: 7 -- submitted tasks are shown below ~> TaskHandler[jobId: 26; id: 6; name: BACANNOT:ICEBERG (2212S024__2); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/6e/f70f6822f65e5be864ac63b2554ca6 started: 1676535783685; exited: -; ] ~> TaskHandler[jobId: 27; id: 19; name: BACANNOT:ARGMINER (2212S024__2); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/51/988fefe222d74d2916071e1dfc16fb started: 1676535783687; exited: -; ] ~> TaskHandler[jobId: 34; id: 18; name: BACANNOT:VICTORS (2212S024__2); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/d7/4fb43d51cae03164d9cf08f879f3c7 started: 1676535783707; exited: -; ] ~> TaskHandler[jobId: 44; id: 38; name: BACANNOT:ICEBERG (2212S023__1); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/00/00e15911cc443b500dd2fc52e0179d started: 1676535798656; exited: -; ] ~> TaskHandler[jobId: 48; id: 29; name: BACANNOT:PLASMIDFINDER (2212S023__1); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/3a/5fd27125eddacafef86f63d8ab48f2 started: 1676535798667; exited: -; ] ~> TaskHandler[jobId: 52; id: 41; name: BACANNOT:VICTORS (2212S023__1); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/24/ba54c42037899cc0d1c378dbc67153 started: 1676535828843; exited: -; ] ~> TaskHandler[jobId: 55; id: 43; name: BACANNOT:VFDB (2212S023__1); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/78/145c152f758fc1f565c782725d3ff0 started: 1676535800946; exited: -; ] Feb-16 16:26:59.100 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor slurm > tasks to be completed: 7 -- submitted tasks are shown below ~> TaskHandler[jobId: 26; id: 6; name: BACANNOT:ICEBERG (2212S024__2); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/6e/f70f6822f65e5be864ac63b2554ca6 started: 1676535783685; exited: -; ] ~> TaskHandler[jobId: 27; id: 19; name: BACANNOT:ARGMINER (2212S024__2); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/51/988fefe222d74d2916071e1dfc16fb started: 1676535783687; exited: -; ] ~> TaskHandler[jobId: 34; id: 18; name: BACANNOT:VICTORS (2212S024__2); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/d7/4fb43d51cae03164d9cf08f879f3c7 started: 1676535783707; exited: -; ] ~> TaskHandler[jobId: 44; id: 38; name: BACANNOT:ICEBERG (2212S023__1); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/00/00e15911cc443b500dd2fc52e0179d started: 1676535798656; exited: -; ] ~> TaskHandler[jobId: 48; id: 29; name: BACANNOT:PLASMIDFINDER (2212S023__1); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/3a/5fd27125eddacafef86f63d8ab48f2 started: 1676535798667; exited: -; ] ~> TaskHandler[jobId: 52; id: 41; name: BACANNOT:VICTORS (2212S023__1); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/24/ba54c42037899cc0d1c378dbc67153 started: 1676535828843; exited: -; ] ~> TaskHandler[jobId: 55; id: 43; name: BACANNOT:VFDB (2212S023__1); status: RUNNING; exit: -; error: -; workDir: /home/ktest/share/Working_folder/TRUNG/Result_Dir/wf_cache/78/145c152f758fc1f565c782725d3ff0 started: 1676535800946; exited: -; ] Feb-16 16:30:05.785 [SIGINT handler] DEBUG nextflow.Session - Session aborted -- Cause: SIGINT Feb-16 16:30:05.830 [main] DEBUG nextflow.Session - Session await > all barriers passed Feb-16 16:30:05.842 [main] WARN n.processor.TaskPollingMonitor - Killing running tasks (7) Feb-16 16:30:05.926 [main] DEBUG nextflow.trace.WorkflowStatsObserver - Workflow completed > WorkflowStats[succeededCount=31; failedCount=6; ignoredCount=0; cachedCount=0; pendingCount=0; submittedCount=0; runningCount=0; retriesCount=0; abortedCount=7; succeedDuration=5h 55m 36s; failedDuration=14m 47s; cachedDuration=0ms;loadCpus=0; loadMemory=0; peakRunning=37; peakCpus=114; peakMemory=258 GB; ] Feb-16 16:30:05.926 [main] DEBUG nextflow.trace.TraceFileObserver - Flow completing -- flushing trace file Feb-16 16:30:05.929 [main] DEBUG nextflow.trace.ReportObserver - Flow completing -- rendering html report Feb-16 16:30:06.011 [main] DEBUG nextflow.trace.ReportObserver - Execution report summary data: [{"cpuUsage":{"mean":65.78,"min":64.78,"q1":65.28,"q2":65.78,"q3":66.28,"max":66.78,"minLabel":"BACANNOT:PROKKA (2212S024__2)","maxLabel":"BACANNOT:PROKKA (2212S023__1)","q1Label":"BACANNOT:PROKKA 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[main] DEBUG nextflow.trace.TimelineObserver - Flow completing -- rendering html timeline Feb-16 16:30:06.906 [main] WARN nextflow.dag.GraphvizRenderer - To render the execution DAG in the required format it is required to install Graphviz -- See http://www.graphviz.org for more info. Feb-16 16:30:07.031 [main] DEBUG nextflow.cache.CacheDB - Closing CacheDB done Feb-16 16:30:07.055 [main] DEBUG nextflow.script.ScriptRunner - > Execution complete -- Goodbye