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StageClass_use_ids.py
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StageClass_use_ids.py
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import torch
import torch.nn as nn
import torch.utils.data as torch_data
import re
import os
import logging
import pickle
import time
import random
import argparse
import multiprocessing
import pdb
import json
import numpy as np
import copy
from scipy import sparse
from sklearn.feature_extraction.text import TfidfVectorizer, CountVectorizer
from nltk.corpus import stopwords
import nltk
import evaluation
from tqdm import tqdm
# 词性还原
from nltk import word_tokenize, pos_tag
from nltk.corpus import wordnet
from nltk.stem import WordNetLemmatizer
import transformers
from transformers import RobertaTokenizer, RobertaConfig, RobertaModel, RobertaForSequenceClassification
from spiral import ronin
from Model.models import ModelBinaryCreateNeg, ModelCodeBertBiEncoder, ModelGraphCodeBERTMultiCodeFusion, \
ModelCodeBertPlus
from GraphCodeBERT import GraphCodeBert, InputFeatures, parsers, extract_dataflow, extract_ast_subcode
from two_stage_utils import sliding_window
logger = logging.getLogger(__name__)
download = True
padding_strategy = 'max_length'
def set_seed(seed=42):
random.seed(seed)
os.environ['PYHTONHASHSEED'] = str(seed)
np.random.seed(seed)
torch.manual_seed(seed)
torch.cuda.manual_seed(seed)
torch.backends.cudnn.deterministic = True
def convert_examples_to_features(item):
"""js, tokenizer, args, return_item="code_string_noDFG"
return_item:
- code_token
- query_token
- all
"""
js_original_string, extracted_string_token, js_docstring_tokens, js_url, tokenizer, args, return_item = item
return_items = ["all", "code_token", "query_token", # 0~2
"code_string", "query_string", "code_string_noDFG", # 3~5
]
if not hasattr(args, "data_flow_length"):
args.data_flow_length = 64
if not hasattr(args, "no_comments"):
args.remove_comments = True
if return_item in [return_items[0], return_items[1], return_items[3], return_items[5], ]:
# *********************萌萌哒***********************
# code
parser = parsers[args.lang]
# extract data flow
dfg = []
if extracted_string_token is None: # extracted_string_token 不是 None,后面就没有 dfg 了
extracted_string_token, dfg = extract_dataflow(js_original_string, parser, args.lang,
remove_comments=args.remove_comments)
else:
pass
code_tokens = extracted_string_token.copy()
code_tokens = [tokenizer.tokenize('@ ' + x)[1:] if idx != 0 else tokenizer.tokenize(x) for idx, x in
enumerate(code_tokens)]
ori2cur_pos = {}
ori2cur_pos[-1] = (0, 0)
for i in range(len(code_tokens)):
ori2cur_pos[i] = (ori2cur_pos[i - 1][1], ori2cur_pos[i - 1][1] + len(code_tokens[i]))
code_tokens = [y for x in code_tokens for y in x]
# truncating
code_tokens = code_tokens[:args.code_length + args.data_flow_length - 2 - min(len(dfg), args.data_flow_length)]
code_tokens = [tokenizer.cls_token] + code_tokens + [tokenizer.sep_token]
if return_item == "code_string_noDFG": # "code_string_noDFG"
code_string = tokenizer.convert_tokens_to_string(code_tokens[1:-1]) # 去掉 cls, end
return code_string
code_ids = tokenizer.convert_tokens_to_ids(code_tokens)
position_idx = [i + tokenizer.pad_token_id + 1 for i in range(len(code_tokens))]
dfg = dfg[:args.code_length + args.data_flow_length - len(code_tokens)]
code_tokens += [x[0] for x in dfg]
if return_item == return_items[3]: # "code_string"
code_string = tokenizer.convert_tokens_to_string(code_tokens[1:-1]) # 去掉 cls, end
return code_string
position_idx += [0 for x in dfg]
code_ids += [tokenizer.unk_token_id for x in dfg]
padding_length = args.code_length + args.data_flow_length - len(code_ids)
position_idx += [tokenizer.pad_token_id] * padding_length
code_ids += [tokenizer.pad_token_id] * padding_length
# reindex
reverse_index = {}
for idx, x in enumerate(dfg):
reverse_index[x[1]] = idx
for idx, x in enumerate(dfg):
dfg[idx] = x[:-1] + ([reverse_index[i] for i in x[-1] if i in reverse_index],)
dfg_to_dfg = [x[-1] for x in dfg]
dfg_to_code = [ori2cur_pos[x[1]] for x in dfg]
length = len([tokenizer.cls_token])
dfg_to_code = [(x[0] + length, x[1] + length) for x in dfg_to_code]
if return_item in [return_items[0], return_items[2], return_items[4], ]:
# *********************萌萌哒***********************
# nl
nl = ' '.join(js_docstring_tokens)
nl_tokens = tokenizer.tokenize(nl)[:args.nl_length - 2]
nl_tokens = [tokenizer.cls_token] + nl_tokens + [tokenizer.sep_token]
nl_ids = tokenizer.convert_tokens_to_ids(nl_tokens)
padding_length = args.nl_length - len(nl_ids)
nl_ids += [tokenizer.pad_token_id] * padding_length
if return_item == 'query_string':
nl_string = tokenizer.convert_tokens_to_string(nl_tokens[1:-1]) # 去掉 cls, end
return nl_string
output_dict = {
"code_tokens": code_tokens, "code_ids": code_ids, "position_idx": position_idx,
"dfg_to_code": dfg_to_code, "dfg_to_dfg": dfg_to_dfg, "nl_tokens": nl_tokens,
"nl": nl, "nl_ids": nl_ids, "js_url": js_url, "js_original_string": js_original_string,
"extracted_string_token": extracted_string_token,
}
return output_dict
class TextPreProcess:
def __init__(self, language="python"):
global download
if download:
nltk.download('wordnet')
nltk.download('punkt')
nltk.download('averaged_perceptron_tagger')
nltk.download('omw-1.4')
nltk.download('stopwords')
download=False
self.language = language
pass
def pascal_case_to_snake_case(self, camel_case: str):
"""大驼峰(帕斯卡)转蛇形 split pascal case and snake case"""
snake_case = re.sub(r"(?P<key>[A-Z][a-z])", r"_\g<key>", camel_case)
snake_case = re.sub("_", " ", snake_case)
# snake_case = re.sub(r"(?P<key>[A-Z])", r"_\g<key>", camel_case)
return snake_case.lower().strip('_')
def delcommonds(self, content: str):
"""Delete the python comments"""
count = 1 # 替换个数
out = content
if self.language == "python":
out = re.sub(r'""".*?"""', ' ', content, flags=re.S, count=count)
# out = re.sub(r'(##.*?\n)', ' ', out)
elif self.language in {"java", "javascript", "go", "php"}:
# out = re.sub(r'/\*{1,2}[\s\S]*?\*/', ' ', content, count=count)
# out = re.sub(r'(\\.*?\n)', ' \n', out)
pass
if self.language == "php":
# out = re.sub(r'(##.*?\n)', ' ', out)
pass
elif self.language in {"ruby"}:
# out = re.sub(r'=begin.*?=end', ' ', content, flags=re.S, count=count)
# out = re.sub(r'(##.*?\n)', ' ', out)
pass
else:
raise Exception("Not implement!")
# out = re.sub(r'(#.*?\n)', ' ', out)
return out
def no_punctuation(self, sentence: str):
"""Delete the punctuations and digit"""
sentence = re.sub(r'[^\w\s]', ' ', sentence)
sentence = re.sub(r'[0-9]+', ' ', sentence)
return sentence
# 获取单词的词性
def get_wordnet_pos(self, tag):
if tag.startswith('J'):
return wordnet.ADJ
elif tag.startswith('V'):
return wordnet.VERB
elif tag.startswith('N'):
return wordnet.NOUN
elif tag.startswith('R'):
return wordnet.ADV
else:
return None
def Lemmatizer(self, sentence: str):
tokens = word_tokenize(sentence) # 分词
tagged_sent = pos_tag(tokens) # 获取单词词性
wnl = WordNetLemmatizer()
lemmas_sent = []
for tag in tagged_sent:
wordnet_pos = self.get_wordnet_pos(tag[1]) or wordnet.NOUN
lemmas_sent.append(wnl.lemmatize(tag[0], pos=wordnet_pos)) # 词形还原
return " ".join(lemmas_sent)
def clip_to_8(self, s):
s_list = s.split()
new_s_list = []
for i in range(len(s_list)):
if len(s_list[i]) > 8:
continue
new_s_list.append(s_list[i])
return " ".join(new_s_list)
def split_with_spiral_for_8(self, string):
"""
对于长度大于8的单词拆分
"""
s_list = string.split()
new_s_list = []
for i in range(len(s_list)):
if len(s_list[i]) >= 8:
new_s_list.extend(ronin.split(s_list[i]))
else:
new_s_list.append(s_list[i])
return " ".join(new_s_list)
def del_redundant_spaces(self, string):
"""
remove redundant spaces
"""
out = re.sub(' +', " ", string)
return out
class BaseStageCodeSearch:
def __init__(self, dataset='coclr',
code_pre_process_config=[], query_pre_process_config=[], vectorizer_param=None, args=None):
self.dataset = dataset
if args is None:
args = argparse.Namespace(num_workers=16)
if torch.cuda.device_count() >= 1:
self.device = torch.device("cuda")
else:
self.device = torch.device("cpu")
args.device = self.device
args.eval_batch_size = 256
args.root_path = "~/VisualSearch".replace('~', os.path.expanduser('~'))
if not hasattr(args, "neg_candidate"):
args.neg_candidate = -1 # 默认选择所有 codebase codes 作为 candidate.
self.args = args
self.device = args.device
self.tokenizer = RobertaTokenizer.from_pretrained(args.encoder_name_or_path)
self.code_pre_process_config = code_pre_process_config
self.query_pre_process_config = query_pre_process_config
if not self.code_pre_process_config:
self.code_pre_process_config = ['to_snake_case', 'no_comment', 'no_punctuation']
if not self.query_pre_process_config:
# self.query_pre_process_config = ['to_snake_case', 'no_punctuation']
self.query_pre_process_config = ['None']
if vectorizer_param is None:
self.vectorizer_param = {'min_df': 5, "stop_words": stopwords.words('english')}
else:
self.vectorizer_param = vectorizer_param
if "stop_words" not in vectorizer_param:
self.vectorizer_param["stop_words"] = stopwords.words('english')
self.text_precess = TextPreProcess()
self.test_query = []
self.query_ids = []
self.retrieval_code_base = []
self.retrieval_raw_code_base = []
self.retrieval_code_base_tokened = []
self.test_query_tokened = []
self.code_ids = []
self.bm25 = evaluation.BM25(stop_words=self.vectorizer_param["stop_words"])
if self.dataset == 'coclr':
self._get_data_and_query_coclr()
self.language = "python"
elif self.dataset in ["GraphCodeBERT_python", 'GraphCodeBERT_java', 'GraphCodeBERT_php',
'GraphCodeBERT_javascript', 'GraphCodeBERT_go', 'GraphCodeBERT_ruby', ]:
language = self.dataset.split("_")[-1]
self.language = language
self.text_precess = TextPreProcess(language)
self._get_data_and_query_graphcodebert(language)
elif self.dataset in ["GraphCodeBERTvalid_"+each for each in "go java javascript php ruby python".split()]:
language = self.dataset.split("_")[-1]
self.language = language
self.text_precess = TextPreProcess(language)
self._get_data_and_query_graphcodebert(language, test_name="valid.jsonl")
elif self.dataset in ["GraphCodeBERTtrain_"+each for each in "go java javascript php ruby python".split()]:
language = self.dataset.split("_")[-1]
self.language = language
self.text_precess = TextPreProcess(language)
self._get_data_and_query_graphcodebert_train(language)
pass
else:
raise Exception("Not this %s dataset implement" % self.dataset)
self.rank = None
self.mrr_list = None
self.bm25_score = None
self.bm25_time = None
self.jaccard_score = None
self.jaccard_time = None
self.tfidf_cos_score = None
self.tfidf_cos_time = None
self.bow_cos_score = None
self.bow_cos_time = None
self.score = None
if not hasattr(self, "new_query_ids"):
self.new_query_ids = None
def pre_process(self, code, pre_process_config=[]):
# if not pre_process_config:
# pre_process_config = self.code_pre_process_config
text_precess = self.text_precess
# 驼峰型转蛇形
if 'to_snake_case' in pre_process_config:
code = text_precess.pascal_case_to_snake_case(code).replace('_', ' ')
# 去掉注释
if 'no_comment' in pre_process_config:
code = text_precess.delcommonds(code)
# 去掉符号
if "no_punctuation" in pre_process_config:
code = text_precess.no_punctuation(code)
# 词性还原
if "lemmatizer" in pre_process_config:
code = text_precess.Lemmatizer(code)
# 单词长度限制为 8
if "clip_t_8" in pre_process_config:
code = text_precess.clip_to_8(code)
# 单词长度超过8就用 spiral 划分
if "split_with_spiral_for_8" in pre_process_config:
code = text_precess.split_with_spiral_for_8(code)
# 去掉多余空格
if "del_redundant_spaces" in pre_process_config:
code = text_precess.del_redundant_spaces(code)
return code
def eval_score(self, score, only_mrr=False):
neg_candidate = self.args.neg_candidate
if neg_candidate == -1:
mrr_dict = evaluation.get_mrr(score, self.code_ids, self.query_ids, self.device,
new_query_ids=self.new_query_ids)
mrr = mrr_dict['mrr']
# first_stage.query_ids
mrr_list = mrr_dict['mrr_list']
print("MRR", mrr, end="")
if only_mrr:
return {
"mrr_list": mrr_list, "mrr": mrr,
}
recall_output = evaluation.recall_eval(score, self.code_ids, self.query_ids, self.args.num_workers,
new_query_ids=self.new_query_ids)
print("\nMRR andRecall: \n%.5f\t%s \n" %
(mrr, str(recall_output['text'])))
output_dict = {
"mrr_list": mrr_list, "mrr": mrr, "recall_tuple": recall_output['tuple'],
}
else:
if self.args.window_size > 0:
raise Exception("ToDo: Implements when window_size > 0")
mrr_list = []
# 选择 neg_candidate 数量的 codebase:
if neg_candidate < 200:
raise Exception("neg_candidate is too small")
if neg_candidate > len(self.code_ids):
raise Exception("neg_candidate is too big")
if neg_candidate <= len(self.query_ids):
# 直接选择 neg_candidate 个 query 组成 矩阵
query_ids = self.query_ids[0:neg_candidate]
small_score = score[0:neg_candidate, query_ids]
code_ids = list(np.arange(0, neg_candidate))
query_ids = list(np.arange(0, neg_candidate))
else:
# 需要选 neg_candidate - len(self.query_ids) 个负样本
small_score = score[:, self.query_ids]
other_query_ids = []
shuffle_list = list(range(0, len(self.code_ids)))
random.shuffle(shuffle_list)
for each in shuffle_list:
if each not in self.query_ids:
other_query_ids.append(each)
if len(other_query_ids) >= neg_candidate-len(self.query_ids):
break
small_score = torch.cat((small_score, score[:, other_query_ids]), dim=1)
query_ids = list(np.arange(0, small_score.shape[0]))
code_ids = list(np.arange(0, small_score.shape[1]))
mrr_dict = evaluation.get_mrr(small_score, code_ids, query_ids, self.device)
mrr = mrr_dict['mrr']
mrr_list = mrr_dict['mrr_list']
print("MRR", mrr, end="")
recall_output = evaluation.recall_eval(small_score, code_ids, query_ids, self.args.num_workers)
print("\nMRR andRecall: \n%.5f\t%s \n" %
(mrr, str(recall_output['text'])))
output_dict = {
"mrr_list": mrr_list, "mrr": mrr, "recall_tuple": recall_output['tuple'],
}
return output_dict
def _get_data_and_query_coclr(self):
coclr_path = 'Model/'
test_500_search_path = os.path.join(coclr_path, 'data/search/cosqa-retrieval-test-500.json')
retrieval_code_base_path = os.path.join(coclr_path, 'data/search/code_idx_map.txt')
self.retrieval_code_base = []
self.retrieval_raw_code_base = []
self.test_query = []
self.query_ids = []
self.code_ids = []
with open(retrieval_code_base_path, 'r') as f:
temp = json.loads(f.read())
for code, code_id in temp.items():
self.retrieval_raw_code_base.append(code)
self.retrieval_code_base.append(code)
self.code_ids.append(code_id)
with open(test_500_search_path, 'r') as f:
test_500 = json.load(f)
print(test_500[0]['doc'])
print(test_500[0]['code'])
print(test_500[0]['code_tokens'])
for each in test_500:
self.test_query.append(self.pre_process(
each['doc'], pre_process_config=self.query_pre_process_config))
self.query_ids.append(each["retrieval_idx"])
for i in range(len(self.retrieval_code_base)):
self.retrieval_code_base[i] = self.pre_process(
self.retrieval_code_base[i], pre_process_config=self.code_pre_process_config)
def store_raw_codeToken(self, test_name="test.jsonl"):
self.retrieval_raw_codeToken_base = []
g_csn_path = os.path.join(self.args.root_path, "GraphCodeBERT_dataset", self.language)
test_search_path = os.path.join(g_csn_path, test_name)
retrieval_code_base_path = os.path.join(g_csn_path, 'codebase.jsonl')
# retrieval_code_base, code_ids
logger.info("Read:" + retrieval_code_base_path)
examples = self._get_examples(retrieval_code_base_path)
for each in examples:
# 这里放入 code_tokens 为 BPE 后的,eg:
# ['<s>', 'def', 'Ġset', '_', 'cookie', 'Ġ(', 'Ġself', 'Ġ,', 'Ġname', 'Ġ,', 'Ġvalue',... ]
self.retrieval_raw_codeToken_base.append(" ".join(each['code_tokens']))
def store_raw_queryToken(self, test_name="test.jsonl"):
self.retrieval_raw_queryToken_base = []
g_csn_path = os.path.join(self.args.root_path, "GraphCodeBERT_dataset", self.language)
test_search_path = os.path.join(g_csn_path, test_name)
retrieval_code_base_path = os.path.join(g_csn_path, 'test.jsonl')
# retrieval_code_base, code_ids
logger.info("Read:" + retrieval_code_base_path)
examples = self._get_examples(retrieval_code_base_path)
for each in examples:
# 这里放入 code_tokens 为 BPE 后的,eg:
# ['<s>', 'def', 'Ġset', '_', 'cookie', 'Ġ(', 'Ġself', 'Ġ,', 'Ġname', 'Ġ,', 'Ġvalue',... ]
self.retrieval_raw_queryToken_base.append(" ".join(each['nl_tokens']))
def _get_data_and_query_graphcodebert(self, language, test_name="test.jsonl"):
"""
multi-passage split.
"""
args = self.args
neg_candidate = self.args.neg_candidate
g_csn_path = os.path.join(self.args.root_path, "GraphCodeBERT_dataset", language)
test_search_path = os.path.join(g_csn_path, test_name)
retrieval_code_base_path = os.path.join(g_csn_path, 'codebase.jsonl')
self.retrieval_code_base = [] # 包含需要用到的 code_base
self.retrieval_raw_code_base = []
self.test_query = [] # 包含需要用的 test query
self.query_ids = [] # 每个 query 对应的 code gt
self.code_ids = []
self.raw_test_query = []
# retrieval_code_base, code_ids
logger.info("Read:" + retrieval_code_base_path)
examples = self._get_examples(retrieval_code_base_path)
for each in examples:
self.retrieval_code_base_tokened.append(each["code_ids"])
self.retrieval_raw_code_base.append(each['js_original_string'])
self.retrieval_code_base.append(self.pre_process(
each['js_original_string'], pre_process_config=self.code_pre_process_config))
self.code_ids = list(np.arange(0, len(self.retrieval_code_base)))
if args.do_debug:
for example in examples:
self.test_query_tokened.append(example["nl_ids"])
self.raw_test_query.append(example["nl"])
self.test_query.append(
# self.pre_process(each["docstring"],
# pre_process_config=self.query_pre_process_config
# ))
self.pre_process(example["nl"],
pre_process_config=self.query_pre_process_config
))
self.query_ids = self.code_ids.copy()
else:
# query
logger.info("Read:" + test_search_path)
test_examples = self._get_examples(test_search_path)
if args.nl_num != -1:
logger.info("args.nl_num is %d" % args.nl_num)
test_examples = test_examples[0:args.nl_num]
for example in test_examples:
self.test_query_tokened.append(example["nl_ids"])
self.raw_test_query.append(example["nl"])
self.test_query.append(
# self.pre_process(each["docstring"],
# pre_process_config=self.query_pre_process_config
# ))
self.pre_process(example["nl"],
pre_process_config=self.query_pre_process_config
))
self.query_ids = []
codeurl_to_int = {}
for i, each in enumerate(examples):
if each['js_url'] in codeurl_to_int:
print("存在重复: ", each['url'])
codeurl_to_int[each['js_url']] = i
for each in test_examples:
self.query_ids.append(codeurl_to_int[each['js_url']])
self._code_precess(examples)
self.retrieval_code_base_tokened = torch.tensor(self.retrieval_code_base_tokened)
self.test_query_tokened = torch.tensor(self.test_query_tokened)
def _get_data_and_query_graphcodebert_train(self, language):
"""
读取 train.jsonl 文件,其中 query 和 code 一一对应
"""
g_csn_path = os.path.join(self.args.root_path, "GraphCodeBERT_dataset", language)
retrieval_code_base_path = os.path.join(g_csn_path, 'train.jsonl')
self.retrieval_code_base = []
self.retrieval_raw_code_base = []
self.test_query = []
self.query_ids = []
self.code_ids = []
# retrieval_code_base, query
logger.info("Get retrieval_code_base")
examples = self._get_examples(retrieval_code_base_path)
for each in examples:
self.retrieval_code_base_tokened.append(each["code_ids"])
self.test_query_tokened.append(each["nl_ids"])
self.retrieval_raw_code_base.append(each["js_original_string"])
self.retrieval_code_base.append(self.pre_process(
each["js_original_string"], pre_process_config=self.code_pre_process_config))
self.test_query.append(
self.pre_process(each["nl"],
pre_process_config=self.query_pre_process_config
))
self.query_ids = list(np.arange(0, len(self.test_query)))
self.code_ids = list(np.arange(0, len(self.retrieval_raw_code_base)))
self._code_precess(examples)
self.retrieval_code_base_tokened = torch.tensor(self.retrieval_code_base_tokened)
self.test_query_tokened =torch.tensor(self.test_query_tokened)
def _get_examples(self, jsonl_path):
pool = multiprocessing.Pool(self.args.num_workers)
data = []
if self.args.do_debug:
# Get codebase url2codeString dict
url2codeString = {}
with open(jsonl_path, 'r') as f:
for line in tqdm(f):
line = line.strip()
js = json.loads(line)
url2codeString[js["url"]] = js["original_string"]
jsonl_path = jsonl_path.replace("codebase", "test")
with open(jsonl_path, 'r') as f:
index = 0
for line in tqdm(f):
line = line.strip()
js = json.loads(line)
if self.args.do_debug:
js["original_string"] = url2codeString[js["url"]]
index += 1
if index > 80:
break
data.append((js["original_string"], None, js["docstring_tokens"], js["url"],
self.tokenizer, self.args, "all"))
examples = pool.map(convert_examples_to_features, tqdm(data, total=len(data)))
del data
return examples
def _code_precess(self, examples):
args = self.args
split_type = self.args.split_type
window_setting = self.args.window_setting.split(",")
window_size, step = int(window_setting[0].split("_")[1]), int(window_setting[1].split("_")[1]),
if step == -1:
step = window_size
self.args.window_size, self.args.step = window_size, step
if window_size <= 0 and split_type in ['token', 'word_space', 'line']:
return
logger.info("split the code with " + str(split_type))
# 仅仅给要检索的 query 得 gt 划分 multi-passages
new_query_ids = [[each] for each in self.query_ids]
for index in tqdm(range(0, len(self.query_ids))):
code_index = self.query_ids[index]
# 进行划分
self.args.remove_comments = False
if split_type == "token":
code_list = examples[code_index]["extracted_string_token"]
code_subset_list = [each[1] for each in sliding_window(code_list, window_size, step)]
if len(code_subset_list) == 1:
continue
for each in code_subset_list:
self.retrieval_code_base_tokened.append(convert_examples_to_features(
(None, each, [], None, self.tokenizer, self.args, "all")
)["code_ids"]
)
self.retrieval_code_base.append(" ".join(each))
new_query_ids[index].append(len(self.retrieval_code_base) - 1)
elif split_type in ["word_space", "line", "ast_subtree"]:
code = self.retrieval_code_base[code_index]
if args.split_type == "ast_subtree":
parser = parsers[args.lang]
code_subset_list = extract_ast_subcode(code, parser, args.lang, min_line=args.min_line,
remove_comments=True)
if window_size > 0:
code_subset_list = ["\n".join(each[1]) for each in sliding_window(code_subset_list, window_size, step)]
else:
split_pattern = {
"word_space": ' ', "line": '\n'
}
code = self.pre_process(
code, pre_process_config=["del_redundant_spaces"])
code_list = re.split(split_pattern[split_type], code) # support multi word split. eg: re.split(' |,|.', code)
code_subset_list = [" ".join(each[1]) for each in sliding_window(code_list, window_size, step)]
if len(code_subset_list) == 1:
continue
for each in code_subset_list:
if len(each) == 0:
continue
self.retrieval_code_base_tokened.append(convert_examples_to_features(
(each, None, [], None, self.tokenizer, self.args, "all")
# js_original_string, extracted_string_token, js_docstring_tokens, js_url, tokenizer, args, return_item
)["code_ids"]
)
self.retrieval_code_base.append(each)
new_query_ids[index].append(len(self.retrieval_code_base) - 1)
self.args.remove_comments = True
self.new_query_ids = new_query_ids
self.code_ids = list(np.arange(0, len(self.retrieval_code_base)))
def count_vectorizer_eval(self):
test_500_query = self.test_query
test_datebase = self.retrieval_code_base
# 创建transform
vectorizer = CountVectorizer(stop_words=stopwords.words('english'), min_df=self.vectorizer_param['min_df'])
# vectorizer = CountVectorizer()
# 分词并建立词汇表
vectorizer.fit(test_500_query)
# 结果输出
# print(vectorizer.vocabulary_)
# 编码 query, database vector
query_vector = vectorizer.transform(test_500_query).toarray()
database_vector = vectorizer.transform(test_datebase).toarray()
print(type(database_vector), database_vector.shape)
score_dict = {}
self.bm25.fit(test_datebase)
score = self.bm25.bm25_sim(
test_500_query, test_datebase, self.device, num_workers=self.args.num_workers).cpu()
print("\nBM25:", end="")
self.eval_score(score)
score_dict['BM25'] = score.cpu()
# score = evaluation.jaccard_sim(query_vector, database_vector, self.device).cpu()
# print("\nJaccard:", end="")
# self.eval_score(score)
# score_dict['Jaccard'] = score.cpu()
#
# score = evaluation.cosine_sim(torch.Tensor(query_vector), torch.Tensor(database_vector), self.device).cpu()
# print("\nCos:", end="")
# self.eval_score(score)
# score_dict['Cos'] = score.cpu()
return score_dict
def tfidf_vectorizer_eval(self):
test_500_query = self.test_query
test_datebase = self.retrieval_code_base
# 创建transform
vectorizer = TfidfVectorizer(stop_words=stopwords.words('english'), min_df=self.vectorizer_param['min_df'])
# vectorizer = CountVectorizer()
# 分词并建立词汇表
vectorizer.fit(test_500_query)
# 结果输出
# print(vectorizer.vocabulary_)
# 编码 query, database vector
query_vector = vectorizer.transform(test_500_query).toarray()
database_vector = vectorizer.transform(test_datebase).toarray()
print(type(database_vector), database_vector.shape)
score = evaluation.cosine_sim(torch.Tensor(query_vector), torch.Tensor(database_vector), self.device)
print("Cos:", end="")
self.eval_score(score)
def print_query_and_return_list(self, score=None, rank_index=0, topK=5):
if self.args.window_size > 0:
raise Exception("ToDo: Implements when indow_size > 0")
if score is not None:
mrr_dict = evaluation.get_mrr(score, self.code_ids, self.query_ids, self.device)
self.mrr_list = mrr_dict['mrr_list']
self.rank = torch.argsort(-score, dim=1)
mrr_list = self.mrr_list
rank = self.rank.clone()
code_ids, query_ids = self.code_ids, self.query_ids
mrr_tensor = torch.Tensor(mrr_list)
query_index = torch.argsort(-mrr_tensor)[rank_index]
code_index = rank[query_index].tolist()
gt_index = query_ids[query_index]
gt_rank = code_index.index(int(gt_index)) + 1
print("Query: %s. Rank: %d" % (self.test_query[query_index], gt_rank))
print("GT Code: \n", self.retrieval_raw_code_base[int(gt_index)])
print("Codes: ")
for each in code_index[0:topK]:
print(self.retrieval_raw_code_base[each])
def compare_two_mrr(self, score1, score2, rank_index=0, topK=5,
name_list=['method1', 'method2'], Raw_test_query=False):
"""
比较两个查询结果
score: 相似度矩阵
"""
if self.args.window_size > 0:
raise Exception("ToDo: Implements when window_size > 0")
if hasattr(self, "mrr_tensor1"):
print("Have score1")
mrr_tensor1 = self.mrr_tensor1
mrr_tensor2 = self.mrr_tensor2
else:
mrr_list1 = evaluation.get_mrr(score1, self.code_ids, self.query_ids, self.device)['mrr_list']
mrr_list2 = evaluation.get_mrr(score2, self.code_ids, self.query_ids, self.device)['mrr_list']
mrr_tensor1 = torch.Tensor(mrr_list1)
mrr_tensor2 = torch.Tensor(mrr_list2)
self.mrr_tensor1, self.mrr_tensor2 = mrr_tensor1, mrr_tensor2
# 找 1, 2 两种方法 mrr 相减
mrr_subduction_rank = torch.argsort((mrr_tensor1 - mrr_tensor2))
query_index = mrr_subduction_rank[rank_index]
rank1 = torch.argsort(-score1[query_index])
rank2 = torch.argsort(-score2[query_index])
code_ids, query_ids = self.code_ids, self.query_ids
gt_index = query_ids[query_index]
code_index1 = rank1.tolist()
code_index2 = rank2.tolist()
gt_rank1 = code_index1.index(int(gt_index)) + 1
gt_rank2 = code_index2.index(int(gt_index)) + 1
print("Query: %s. \n%s: GT Rank %d. %s: GT Rank %d" %
(self.test_query[query_index].split("\n")[0], name_list[0], gt_rank1, name_list[1], gt_rank2))
if Raw_test_query:
print("Raw test query: %s" % self.raw_test_query[query_index])
print("-"*20)
print("GT Code: \n", self.retrieval_raw_code_base[int(gt_index)])
print("-" * 7)
print("######### %s ##########" % name_list[0])
print("Query: %s" % self.test_query[query_index])
print("Codes: ")
for each in code_index1[0:topK]:
print("-" * 20)
print(self.retrieval_raw_code_base[each])
print("######### %s ##########" % name_list[1])
print("Query: %s" % self.test_query[query_index])
print("Codes: ")
for each in code_index2[0:topK]:
print("-" * 20)
print(self.retrieval_raw_code_base[each])
def get_bm25_time_score(self, topK, neg_candidate=-1):
logger.info("get_bm25_time_score")
test_500_query = self.test_query
test_datebase = self.retrieval_code_base
if self.bm25_score is None:
self.bm25.fit(test_datebase)
self.bm25_score, self.bm25_time = self.bm25.bm25_sim_with_time(test_500_query, test_datebase)
index = torch.argsort(-self.bm25_score, -1)[:, :topK]
topK_score = torch.zeros(index.shape)
for i, each in enumerate(index):
topK_score[i] = self.bm25_score[i, each]
if neg_candidate != -1:
return self.bm25_score, index, neg_candidate / self.bm25_score.shape[1] * self.bm25_time
return self.bm25_score, index, self.bm25_time
def get_jaccard_time_score(self, topK, neg_candidate=-1):
logger.info("get_jaccard_time_score")
if self.jaccard_score is None:
test_500_query = self.test_query
test_datebase = self.retrieval_code_base
# 创建transform
vectorizer = CountVectorizer(stop_words=self.vectorizer_param["stop_words"],
min_df=self.vectorizer_param['min_df'])
# 分词并建立词汇表
vectorizer.fit(test_500_query)
# 编码 query, database vector
query_vector = vectorizer.transform(test_500_query).toarray()
database_vector = vectorizer.transform(test_datebase).toarray()
print(type(database_vector), database_vector.shape)
start_time = time.time()
self.jaccard_score = evaluation.jaccard_sim(torch.Tensor(query_vector), torch.Tensor(database_vector),
self.device).cpu()
end_time = time.time()
self.jaccard_time = end_time - start_time
index = torch.argsort(-self.jaccard_score, -1)[:, :topK]
topK_score = torch.zeros(index.shape)
for i, each in enumerate(index):
topK_score[i] = self.jaccard_score[i, each]
if neg_candidate != -1:
return self.jaccard_score, index, neg_candidate/self.jaccard_score.shape[1]*self.jaccard_time
return self.jaccard_score, index, self.jaccard_time
def get_tfidf_cos_time_score(self, topK, neg_candidate=-1):
logger.info("get_tfidf_cos_time_score")
if self.tfidf_cos_score is None:
test_500_query = self.test_query
test_datebase = self.retrieval_code_base
# 创建transform
vectorizer = TfidfVectorizer(stop_words=self.vectorizer_param["stop_words"],
min_df=self.vectorizer_param['min_df'])
# vectorizer = CountVectorizer()
# 分词并建立词汇表
vectorizer.fit(test_500_query)
# 编码 query, database vector
query_vector = vectorizer.transform(test_500_query).toarray()
start_time = time.time()
database_vector = vectorizer.transform(test_datebase).toarray()
print(type(database_vector), database_vector.shape)
self.tfidf_cos_score = evaluation.cosine_sim(
torch.Tensor(query_vector), torch.Tensor(database_vector), self.device).cpu()
end_time = time.time()
self.tfidf_cos_time = end_time - start_time
index = torch.argsort(-self.tfidf_cos_score, -1)[:, :topK]
topK_score = torch.zeros(index.shape)
for i, each in enumerate(index):
topK_score[i] = self.tfidf_cos_score[i, each]
if neg_candidate != -1:
return self.tfidf_cos_score, index, neg_candidate/self.tfidf_cos_score.shape[1]*self.tfidf_cos_time
return self.tfidf_cos_score, index, self.tfidf_cos_time
def get_bow_cos_time_score(self, topK, neg_candidate=-1):
logger.info("get_bow_cos_time_score")
if self.bow_cos_score is None:
test_500_query = self.test_query
test_datebase = self.retrieval_code_base
# 创建transform
vectorizer = CountVectorizer(stop_words=self.vectorizer_param["stop_words"],
min_df=self.vectorizer_param['min_df'])
# vectorizer = CountVectorizer()
# 分词并建立词汇表
vectorizer.fit(test_500_query)
# 编码 query, database vector
query_vector = vectorizer.transform(test_500_query).toarray()
start_time = time.time()
database_vector = vectorizer.transform(test_datebase).toarray()
print(type(database_vector), database_vector.shape)
self.bow_cos_score = evaluation.cosine_sim(
torch.Tensor(query_vector), torch.Tensor(database_vector), self.device).cpu()
end_time = time.time()
self.bow_cos_time = end_time - start_time
index = torch.argsort(-self.bow_cos_score, -1)[:, :topK]
topK_score = torch.zeros(index.shape)
for i, each in enumerate(index):
topK_score[i] = self.bow_cos_score[i, each]
if neg_candidate != -1:
return self.bow_cos_score, index, neg_candidate/self.bow_cos_score.shape[1]*self.bow_cos_time
return self.bow_cos_score, index, self.bow_cos_time
def write_twoStage_result(self, score, stage1_time, stage2_time, topK, result_dir="./result_log", neg_candidate=-1):
# ****************************************************************
eval_output_dict_two_stage = self.eval_score(score)
result_log_path = os.path.join(result_dir, self.language)
for eval_output_dict, stage_name, stage_time in zip(
[eval_output_dict_two_stage],
["two_stage"],
[stage1_time+stage2_time]
):
result_log_file = os.path.join(result_log_path, stage_name)
if not os.path.exists(os.path.abspath(result_log_file)):
os.makedirs(os.path.abspath(result_log_file))
(r1, r5, r10, r100, r1000, medr, mAP) = eval_output_dict["recall_tuple"]
result_str = "Top %s\tNegC %d\t"%(str(topK), neg_candidate) + str(time.asctime(time.localtime(time.time()))) + '\t' + "%.4f\t"*9 % (
eval_output_dict["mrr"], stage1_time, stage_time, r1, r5, r10, r100, r1000, medr
)
with open(os.path.join(result_log_file, self.two_stage_name+".txt"), "a") as f:
f.write(result_str)
f.write("\n")
# ****************************************************************
def get_induce(self, topK=5, type="TF-IDF", addGT=True):
"""
index_stage1: index 相似度由大变小
"""
if type == 'BM25':
score_stage1, index_stage1, stage1_time = self.get_bm25_time_score(topK) # index 相似度由大变小
elif type == 'TF-IDF':
score_stage1, index_stage1, stage1_time = self.get_tfidf_cos_time_score(topK) # index 相似度由大变小
induce = [] # 包含需要计算 score 的 index
for index in range(0, len(index_stage1)): # 0~-1 相似度变大
for each in index_stage1[index][0:topK]:
induce.append(int(index*len(self.retrieval_code_base)+each))
# 再加上 GT
if addGT:
for each in range(0, len(self.query_ids)):
induce.append(int(each*len(self.retrieval_code_base) + int(self.query_ids[each])))
induce = list(set(induce))
return induce
def reset_query(self, query_index: list):
"""
reset the query list refer to query index input。
reset self.test_query, self.query_ids
"""
self._check_all_setting()
self._read_scores_botton = False
self.test_query = list(np.array(self.all_test_query)[query_index])
self.query_ids = list(np.array(self.all_query_ids)[query_index])
if self.new_query_ids is not None:
self.new_query_ids = list(np.array(self.all_new_query_ids)[query_index])
self.rank = None
self.mrr_list = None
self.bm25_score = None