use onky one vignette

Author: cpanse

.Rbuildignore

@@ -12,3 +12,5 @@
 .*rawRcolor.*
 vignettes.MSV86542.Rmd
 vignettes.functional_test.Rmd
+^doc$
+^Meta$

.github/workflows/defaultLinux.yml

@@ -37,7 +37,7 @@ jobs:
           && sudo cp /tmp/rawR/exec/*.dll $MONO_PATH
 
       - name: Cache MSV000086542 raw files
-        id: cache-MSV000086542
+        id: cache-MSV000086542-20181113_010_autoQC01
         uses: actions/cache@v2
         with:
             path: ~/Downloads/
@@ -48,7 +48,7 @@ jobs:
         run: |
              mkdir -p ~/Downloads/ \
              && cd ~/Downloads/ \
-             && wget ftp://massive.ucsd.edu/MSV000086542/raw/*.raw
+             && wget ftp://massive.ucsd.edu/MSV000086542/raw/20181113_010_autoQC01.raw
 
       - name: Cache R packages
         id: cache-rpkgs
@@ -70,11 +70,6 @@ jobs:
             name: rawrr_vignette
             path: check/rawrr.Rcheck/rawrr/doc/JPR_TechnicalNote.pdf
             if-no-files-found: warn
-      - uses: actions/upload-artifact@v2
-        with:
-            name: rawrr_MSV000086542
-            path: check/rawrr.Rcheck/rawrr/doc/JPR_supplement.pdf
-            if-no-files-found: warn
       - uses: actions/upload-artifact@v2
         with:
             name: rawrr_manual

.gitignore

@@ -5,3 +5,5 @@
 src/*.o
 src/*.so
 src/*.dll
+doc
+Meta

vignettes/JPR_supplement.Rmd

@@ -13,11 +13,6 @@ abstract: |
   using the latest stable `R` and [rawrr](https://github.com/fgcz/rawrr)
   package versions.
   A Rmarkdown [script](https://github.com/fgcz/rawrr/blob/master/vignettes/JPR_supplement.Rmd) process generates this report.
-vignette: |
-  %\usepackage[utf8]{inputenc}
-  %\VignetteEncoding{UTF-8}
-  %\VignetteIndexEntry{rawrr - process MSV000086542}
-  %\VignetteEngine{knitr::rmarkdown}
 urlcolor: blue
 toc: true
 header-includes: