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Bluesim

Bluesim is a realistic three dimensional simulator to test ideas for collective behaviors with Bluebots.

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Requirements

  • Python 3.6
  • Matplotlib
  • Numpy
  • Scipy
  • (PIP not mandatory but recommended)

Installation

Either install Matplotlib, Numpy, and Scipy via PIP:

git clone https://code.harvard.edu/flb979/FastSim && cd FastSim
pip install -r ./requirements.txt

Or manually via https://scipy.org/install.html

Additional requirement if animations are desired

  • ipyvolume

Installation: Manually following instructions on https://github.com/maartenbreddels/ipyvolume.

Upload code for an experiment on the virtual Bluebots

Use the heap implementation for maximum performance! The threads implementation is no longer fully supported.

  1. Go to */FastSim/heap/fishfood

  2. Save your new experiment here. If designing a new one, you may start with a copy of fish_template.py, which offers some basic functionalities.

Run an experiment with simulated Bluebots

  1. Go to */FastSim/heap

  2. Change experimental parameters such as number of fish and simulation time in simulation.py.

  3. Run simulation.py from a terminal, together with the filename of the experiment in fishfood you want to simulate, e.g.:

python3 simulation.py dispersion

Simulation results get saved in ./logfiles/ with a yymmdd_hhmmss prefix in the filename. Experimental parameters are saved in yymmdd_hhmmss_meta.txt; experimental data in yymmdd_hhmmss_data.txt.

Results can be animated by running animation.py from a terminal, together with the prefix of the desired file, e.g.:

python3 animation.py 201005_111211

Animation results get saved as html-files in ./logfiles/ with the corresponding yymmdd_hhmmss prefix in the filename. Open with your favorite browser (firefox is recommended for full screen views); sit back and watch the extravaganza!

Data format

Simulation data in ./logfiles/yymmdd_hhmmss_data.txt includes the positions and velocities of all fishes (columns) over time (rows) in csv-format of shape:

(simulation_time * clock_freq + 1) X (no_fishes * 8),

with parameters found in ./logfiles/yymmdd_hhmmss_meta.txt.

The time interval between rows is 1/clock_freq. Within a row, the columns contain no_fishes * 4 positions followed by no_fishes * 4 velocities. For a given fish, the position are its x-, y-, and z-coordinates and its orientation angle phi; the velocity is the first derivative of the position.

Data is easily loaded into matrix format with numpy loadtxt, e.g.:

data = np.loadtxt('./logfiles/yymmdd_hhmmss_data.txt', delimiter=','),

and can be sliced for looking at a particular fish i, or instance in time t as follows:

pos_i = data[:, 4*i : 4*i+4]
vel_i = data[:, 4*no_fishes+4*i : 4*no_fishes+4*i+4]

pos_t = data[t, :no_fishes*4]
vel_t = data[t, no_fishes*4:]

Simulator architecture

The Bluesim simulator has a central database that keeps track of positions, velocities, relative positions, and distances of all simulated robots. The robots are simulated asynchronously and one at a time, ordered by a heap data structure. Each robot has access to a local view of its environment; all robots share the same dynamics. Robot variables such as cognition speed or visual range can be changed, as can the perception complexity by introduction of noise, occlusions, and parsing. The decision making algorithms use the same logic in simulation and on the physical robots. Their syntax looks alike with Python 3 being used everywhere to facilitate simulator-to-robot transitions.

Let me explain the architecture of Bluesim in further detail by going through one simulation step for one robot:

  1. A robot got selected for a simulation step because it had the lowest time of all robots in the heap.
  2. The duration of the simulation step is drawn as a normal deviate with a mean equivalent to the expected duration of a single perception-cognition-action cycle (0.5 s), and a standard deviation of 10% (0.05 s). 4
  3. The robot gets its current local view from the central database. This includes either the set of visible LEDs after occlusions, or the relative positions and distances to visible robots if parsing is not simulated.
  4. Based on this local view, the robot decides on where to move next according to the preprogrammed behavior and respective algorithms.
  5. The dynamics of the robot are simulated for the drawn duration according to where the robot decided to move.
  6. The attained new position and velocity is entered in the central database. The respective relative positions and distances to neighbors are recalculated.
  7. The robot re-enters the heap with updated time = time + duration (and not necessarily at the end of the heap, allowing to alter the robot order).