diff --git a/.github/workflows/pages.yaml b/.github/workflows/pages.yaml new file mode 100644 index 0000000000..935bbfecec --- /dev/null +++ b/.github/workflows/pages.yaml @@ -0,0 +1,79 @@ +--- + + +name: "Pages" + +concurrency: + group: "pages" + cancel-in-progress: true + +on: + push: + +jobs: + + "pages-build": + + runs-on: "ubuntu-22.04" + + steps: + + - name: "Checkout" + uses: "actions/checkout@v4" # tested with v4.1.0 + + - name: "Set up Python 3.8" + uses: "actions/setup-python@v4" # tested with v4.7.0 + with: + python-version: "3.8" + + - name: "Install OpenLDAP's dev package with apt" + run: | + sudo apt-get update + sudo apt-get install --no-install-recommends --yes libldap2-dev libsasl2-dev + + - name: "Install dependencies with Poetry" + run: | + python -m pip install --upgrade pip + python -m pip install poetry --user + python -m poetry install + + - name: "Build documentation with Sphinx" + run: | + poetry run make --directory=./docs/ html + + - name: "Upload artifact for GitHub Pages" + # This could potentially be run only when we intent to deploy... + # ...but it can be useful to have the artifact for debugging + # if: "github.ref_name == github.event.repository.default_branch" + uses: "actions/upload-pages-artifact@v2" # tested with v2.0.0 + with: + path: "docs/build/html" + + "pages-deploy": + + if: "github.ref_name == github.event.repository.default_branch" + + environment: + name: "github-pages" + url: "${{ steps.deployment.outputs.page_url }}" + + needs: + - "pages-build" + + permissions: + pages: "write" + id-token: "write" + + runs-on: "ubuntu-22.04" + + steps: + + - name: "Setup GitHub Pages" + uses: "actions/configure-pages@v3" # tested with v3.0.6 + + - name: "Deploy to GitHub Pages" + id: "deployment" + uses: "actions/deploy-pages@v2" # tested with 2.0.4 + + +... # EOF diff --git a/.readthedocs.yaml b/.readthedocs.yaml index aa209bb218..e27b18a725 100644 --- a/.readthedocs.yaml +++ b/.readthedocs.yaml @@ -1,32 +1,33 @@ +--- + + # .readthedocs.yaml # Read the Docs configuration file # See https://docs.readthedocs.io/en/stable/config-file/v2.html for details -# Required + version: 2 -# Set the OS, Python version and other tools you might need build: - os: ubuntu-22.04 + + os: "ubuntu-22.04" + tools: - python: "3.11" - # You can also specify other tool versions: - # nodejs: "19" - # rust: "1.64" - # golang: "1.19" + python: "3.8" + + jobs: + + pre_create_environment: + - "asdf plugin add poetry" + - "asdf install poetry latest" + - "asdf global poetry latest" + - "poetry config virtualenvs.create false" + + post_install: + - "poetry install --with docs" -# Build documentation in the "docs/" directory with Sphinx sphinx: - configuration: docs/conf.py - -# Optionally build your docs in additional formats such as PDF and ePub -# formats: -# - pdf -# - epub - -# Optional but recommended, declare the Python requirements required -# to build your documentation -# See https://docs.readthedocs.io/en/stable/guides/reproducible-builds.html -# python: -# install: -# - requirements: docs/requirements.txt + configuration: "docs/conf.py" + + +... # EOF diff --git a/docs/Makefile b/docs/Makefile new file mode 100644 index 0000000000..ff6019549d --- /dev/null +++ b/docs/Makefile @@ -0,0 +1,20 @@ +# Minimal makefile for Sphinx documentation +# + +# You can set these variables from the command line, and also +# from the environment for the first two. +SPHINXOPTS ?= -c . +SPHINXBUILD ?= sphinx-build +SOURCEDIR = source +BUILDDIR = build + +# Put it first so that "make" without argument is like "make help". +help: + @$(SPHINXBUILD) -M help "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O) + +.PHONY: help Makefile + +# Catch-all target: route all unknown targets to Sphinx using the new +# "make mode" option. $(O) is meant as a shortcut for $(SPHINXOPTS). +%: Makefile + @$(SPHINXBUILD) -M $@ "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O) diff --git a/docs/conf.py b/docs/conf.py new file mode 100644 index 0000000000..ed143ee26a --- /dev/null +++ b/docs/conf.py @@ -0,0 +1,62 @@ +# + + +# Configuration file for the Sphinx documentation builder. +# +# For the full list of built-in configuration values, see the documentation: +# https://www.sphinx-doc.org/en/master/usage/configuration.html + + +import datetime +import importlib.metadata + + +PROJECT_PACKAGE_NAME = "mxcubecore" +PROJECT_PACKAGE_METADATA = importlib.metadata.metadata(PROJECT_PACKAGE_NAME) + + +# -- Project information ----------------------------------------------------- +# https://www.sphinx-doc.org/en/master/usage/configuration.html#project-information + +project = "MXCuBE-Core" +author = PROJECT_PACKAGE_METADATA["Author"] +copyright = ( + f"{datetime.datetime.today().year}, {author}", +) + +version = PROJECT_PACKAGE_METADATA["Version"] +release = version + +DOCUMENT_DESCRIPTION = f"{project} documentation" + + +# -- General configuration --------------------------------------------------- +# https://www.sphinx-doc.org/en/master/usage/configuration.html#general-configuration + +extensions = ( + "myst_parser", +) + +root_doc = "contents" + +source_suffix = { + ".rst": "restructuredtext", + ".md": "markdown", +} + + +# -- Options for HTML output ------------------------------------------------- +# https://www.sphinx-doc.org/en/master/usage/configuration.html#options-for-html-output + +html_theme = 'alabaster' + +html_theme_options = { + "description": DOCUMENT_DESCRIPTION, + "github_banner": "true", + "github_button": "true", + "github_repo": "mxcubecore", + "github_user": "mxcube", +} + + +# EOF diff --git a/docs/source/contents.rst b/docs/source/contents.rst new file mode 100644 index 0000000000..347bfdfa9c --- /dev/null +++ b/docs/source/contents.rst @@ -0,0 +1,17 @@ +.. + + +################# +Table of contents +################# + +.. toctree:: + :caption: Contents: + :glob: + :titlesonly: + + * + dev/index + + +.. # EOF diff --git a/docs/source/dev/contributing.md b/docs/source/dev/contributing.md new file mode 100644 index 0000000000..e2c079760f --- /dev/null +++ b/docs/source/dev/contributing.md @@ -0,0 +1,4 @@ +# How to contribute? + +```{include} ../../../CONTRIBUTING.md +``` diff --git a/docs/source/dev/index.rst b/docs/source/dev/index.rst new file mode 100644 index 0000000000..92ee65fd06 --- /dev/null +++ b/docs/source/dev/index.rst @@ -0,0 +1,17 @@ +.. + + +####################### +Developer documentation +####################### + + +.. toctree:: + :caption: Contents: + :glob: + :titlesonly: + + * + + +.. # EOF diff --git a/docs/source/index.md b/docs/source/index.md new file mode 100644 index 0000000000..c7719d82ff --- /dev/null +++ b/docs/source/index.md @@ -0,0 +1,2 @@ +```{include} ../../README.md +``` diff --git a/poetry.lock b/poetry.lock index b091e9789f..facdf941ce 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,23 +1,16 @@ -# This file is automatically @generated by Poetry 1.5.0 and should not be changed by hand. +# This file is automatically @generated by Poetry 1.5.1 and should not be changed by hand. [[package]] -name = "astroid" -version = "2.11.7" -description = "An abstract syntax tree for Python with inference support." +name = "alabaster" +version = "0.7.13" +description = "A configurable sidebar-enabled Sphinx theme" optional = false -python-versions = ">=3.6.2" +python-versions = ">=3.6" files = [ - {file = "astroid-2.11.7-py3-none-any.whl", hash = "sha256:86b0a340a512c65abf4368b80252754cda17c02cdbbd3f587dddf98112233e7b"}, - {file = "astroid-2.11.7.tar.gz", hash = "sha256:bb24615c77f4837c707669d16907331374ae8a964650a66999da3f5ca68dc946"}, + {file = "alabaster-0.7.13-py3-none-any.whl", hash = "sha256:1ee19aca801bbabb5ba3f5f258e4422dfa86f82f3e9cefb0859b283cdd7f62a3"}, + {file = "alabaster-0.7.13.tar.gz", hash = "sha256:a27a4a084d5e690e16e01e03ad2b2e552c61a65469419b907243193de1a84ae2"}, ] -[package.dependencies] -lazy-object-proxy = ">=1.4.0" -setuptools = ">=20.0" -typed-ast = {version = ">=1.4.0,<2.0", markers = "implementation_name == \"cpython\" and python_version < \"3.8\""} -typing-extensions = {version = ">=3.10", markers = "python_version < \"3.10\""} -wrapt = ">=1.11,<2" - [[package]] name = "astroid" version = "2.15.5" @@ -45,9 +38,6 @@ files = [ {file = "attrs-23.1.0.tar.gz", hash = "sha256:6279836d581513a26f1bf235f9acd333bc9115683f14f7e8fae46c98fc50e015"}, ] -[package.dependencies] -importlib-metadata = {version = "*", markers = "python_version < \"3.8\""} - [package.extras] cov = ["attrs[tests]", "coverage[toml] (>=5.3)"] dev = ["attrs[docs,tests]", "pre-commit"] @@ -55,6 +45,20 @@ docs = ["furo", "myst-parser", "sphinx", "sphinx-notfound-page", "sphinxcontrib- tests = ["attrs[tests-no-zope]", "zope-interface"] tests-no-zope = ["cloudpickle", "hypothesis", "mypy (>=1.1.1)", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins", "pytest-xdist[psutil]"] +[[package]] +name = "babel" +version = "2.12.1" +description = "Internationalization utilities" +optional = false +python-versions = ">=3.7" +files = [ + {file = "Babel-2.12.1-py3-none-any.whl", hash = "sha256:b4246fb7677d3b98f501a39d43396d3cafdc8eadb045f4a31be01863f655c610"}, + {file = "Babel-2.12.1.tar.gz", hash = "sha256:cc2d99999cd01d44420ae725a21c9e3711b3aadc7976d6147f622d8581963455"}, +] + +[package.dependencies] +pytz = {version = ">=2015.7", markers = "python_version < \"3.9\""} + [[package]] name = "certifi" version = "2023.5.7" @@ -424,6 +428,17 @@ files = [ {file = "distlib-0.3.6.tar.gz", hash = "sha256:14bad2d9b04d3a36127ac97f30b12a19268f211063d8f8ee4f47108896e11b46"}, ] +[[package]] +name = "docutils" +version = "0.20.1" +description = "Docutils -- Python Documentation Utilities" +optional = false +python-versions = ">=3.7" +files = [ + {file = "docutils-0.20.1-py3-none-any.whl", hash = "sha256:96f387a2c5562db4476f09f13bbab2192e764cac08ebbf3a34a95d9b1e4a59d6"}, + {file = "docutils-0.20.1.tar.gz", hash = "sha256:f08a4e276c3a1583a86dce3e34aba3fe04d02bba2dd51ed16106244e8a923e3b"}, +] + [[package]] name = "exceptiongroup" version = "1.1.1" @@ -467,31 +482,6 @@ files = [ docs = ["furo (>=2023.3.27)", "sphinx (>=6.1.3)", "sphinx-autodoc-typehints (>=1.23,!=1.23.4)"] testing = ["covdefaults (>=2.3)", "coverage (>=7.2.3)", "diff-cover (>=7.5)", "pytest (>=7.3.1)", "pytest-cov (>=4)", "pytest-mock (>=3.10)", "pytest-timeout (>=2.1)"] -[[package]] -name = "fonttools" -version = "4.38.0" -description = "Tools to manipulate font files" -optional = false -python-versions = ">=3.7" -files = [ - 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