coverage_report.yml

name: Coverage Report
on:
  pull_request:
    types: [opened, reopened, synchronize]
    paths:
      - '**.py'
jobs:
  pytest-coverage:
    runs-on: ubuntu-latest
    permissions:
      pull-requests: write
    steps:
    - uses: actions/checkout@v3

    - name: Set up Python 3.10
      uses: actions/setup-python@v4
      with:
        python-version: "3.10"

    - name: Install dependencies
      run: |
        sudo apt-get update && sudo apt-get install -y libsasl2-dev libldap2-dev libssl-dev
        python -m pip install --upgrade pip
        python -m pip install poetry --user
        python -m poetry install

    - name: Run and write pytest
      run: |
        set -o pipefail
        poetry run pytest --cov=mxcubecore --junitxml=pytest.xml --cov-report=term-missing:skip-covered | tee pytest-coverage.txt

    - name: Pytest coverage comment
      id: coverage-comment
      uses: MishaKav/pytest-coverage-comment@v1.1.40
      with:
        repo-token: ${{ secrets.CI_TOKEN }}
        pytest-coverage-path: ./pytest-coverage.txt
        junitxml-path: ./pytest.xml
        report-only-changed-files: true

    - name: Check the output coverage
      run: |
        echo "Coverage Percantage - ${{ steps.coverage-comment.outputs.coverage }}"
        echo "Coverage Warnings - ${{ steps.coverage-comment.outputs.warnings }}"
        echo "Coverage Errors - ${{ steps.coverage-comment.outputs.errors }}"
        echo "Coverage Failures - ${{ steps.coverage-comment.outputs.failures }}"
        echo "Coverage Skipped - ${{ steps.coverage-comment.outputs.skipped }}"
        echo "Coverage Tests - ${{ steps.coverage-comment.outputs.tests }}"
        echo "Coverage Time - ${{ steps.coverage-comment.outputs.time }}"