Structured illumination microscopy (SIM) reconstruction algorithm with computational sectioning. More details can be found in the following paper:
[1] Computational Super-Sectioning for Single-Slice Structured Illumination Microscopy.,
IEEE Transactions on Computational Imaging, vol. 5 no. 2, pp. 240-250, 2019.
E. Soubies, and M. Unser.
The code requires the GlobalBioIm library v1.1.2 (or more recent releases)
https://biomedical-imaging-group.github.io/GlobalBioIm/
The repository is organized as follows.
- The script SimScript2D.m contains the main code of the method proposed in [1].
- The script SimuSIM2D.m allows to generate 2D-SIM data (used in ScriptSimuExample.m).
- The script ScriptFig3.m reproduces the Figure 3 of [1].
- The script ScriptSimuExample.m is an example on a small simulated example without out-of-focus signal.
- The script ScriptRealExample.m is an example on the real SIM data located within the folder Data/.
- The script ScriptPatternFromFairSIM.m provides an example on how to generate images of the patterns given the xml file that can be obtained with FairSIM
- Folder Data contains raw-SIM data with corresponding (estimated) PSF and patterns generated as explained in ScriptPatternFromFairSIM.m
- Folder Utils contains auxilliary functions