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Leveraging pypiper ngstk #7

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vreuter opened this issue Sep 28, 2017 · 1 comment
Open

Leveraging pypiper ngstk #7

vreuter opened this issue Sep 28, 2017 · 1 comment

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@vreuter
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vreuter commented Sep 28, 2017

atacseq.py and chipseq.py should use functions from pypiper.ngstk. Specifically, this is in regard to bam_to_bigwig / bamToBigWig (though it may also apply to other pipeline-defined functions). At least from quick look over the version in chipseq.py, it seems like the only real difference is a hook for normalization factor. These functions should use a central version from ngstk once it parameterizes that.
databio/pypiper#52
@vreuter
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vreuter commented Nov 27, 2017 •
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This is now addressed in vreuter/pypiper@9dd47c9

@nsheff nsheff mentioned this issue Oct 31, 2018
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