From e2cb5d2c410e7f322643adc406eb001a2be4596c Mon Sep 17 00:00:00 2001 From: nikosbosse Date: Wed, 6 Dec 2023 23:42:47 +0100 Subject: [PATCH 1/5] gitignore Readme.html file --- .gitignore | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/.gitignore b/.gitignore index 0b003a9e6..0884bab49 100644 --- a/.gitignore +++ b/.gitignore @@ -14,4 +14,5 @@ inst/manuscript/manuscript_files/ docs ..bfg-report/ .DS_Store -.vscode \ No newline at end of file +.vscode +README.html From e3897cdc685d6acf0ffe1a897370113a2387f2c4 Mon Sep 17 00:00:00 2001 From: nikosbosse Date: Wed, 6 Dec 2023 23:46:59 +0100 Subject: [PATCH 2/5] increment version number and add News item --- DESCRIPTION | 2 +- NEWS.md | 5 +++++ 2 files changed, 6 insertions(+), 1 deletion(-) diff --git a/DESCRIPTION b/DESCRIPTION index cbf8e4e1c..06302fca2 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,6 +1,6 @@ Package: scoringutils Title: Utilities for Scoring and Assessing Predictions -Version: 1.2.2 +Version: 1.2.3 Language: en-GB Authors@R: c( person(given = "Nikos", diff --git a/NEWS.md b/NEWS.md index 208129252..583df6130 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,3 +1,8 @@ +# scoringutils 1.2.3 + +## Package updates +- fixed automatic rendering of the Readme using Github Actions by adding the file `README.html` to .gitignore + # scoringutils 1.2.2 ## Package updates From 35c2ee6f5e1ae7736bef609cb833ce3a5841205e Mon Sep 17 00:00:00 2001 From: nikosbosse Date: Thu, 7 Dec 2023 14:16:34 +0100 Subject: [PATCH 3/5] Undo version number increase --- DESCRIPTION | 2 +- NEWS.md | 5 ----- 2 files changed, 1 insertion(+), 6 deletions(-) diff --git a/DESCRIPTION b/DESCRIPTION index 06302fca2..cbf8e4e1c 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,6 +1,6 @@ Package: scoringutils Title: Utilities for Scoring and Assessing Predictions -Version: 1.2.3 +Version: 1.2.2 Language: en-GB Authors@R: c( person(given = "Nikos", diff --git a/NEWS.md b/NEWS.md index 583df6130..208129252 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,8 +1,3 @@ -# scoringutils 1.2.3 - -## Package updates -- fixed automatic rendering of the Readme using Github Actions by adding the file `README.html` to .gitignore - # scoringutils 1.2.2 ## Package updates From 518af316980e19d0590058601bbfc9f214c3ec2c Mon Sep 17 00:00:00 2001 From: nikosbosse Date: Thu, 7 Dec 2023 14:53:58 +0100 Subject: [PATCH 4/5] Correct link to the paper in Readme --- README.Rmd | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.Rmd b/README.Rmd index c0181275c..59055342b 100644 --- a/README.Rmd +++ b/README.Rmd @@ -30,7 +30,7 @@ library(knitr) The `scoringutils` package provides a collection of metrics and proper scoring rules and aims to make it simple to score probabilistic forecasts against the true observed values. -You can find additional information and examples in the papers [Evaluating Forecasts with scoringutils in R](https://arxiv.org/abs/2205.07090) [Scoring epidemiological forecasts on transformed scales](https://www.medrxiv.org/content/10.1101/2023.01.23.23284722v1) as well as the Vignettes ([Getting started](https://epiforecasts.io/scoringutils/articles/scoringutils.html), [Details on the metrics implemented](https://epiforecasts.io/scoringutils/articles/metric-details.html) and [Scoring forecasts directly](https://epiforecasts.io/scoringutils/articles/scoring-forecasts-directly.html)). +You can find additional information and examples in the papers [Evaluating Forecasts with scoringutils in R](https://arxiv.org/abs/2205.07090) [Scoring epidemiological forecasts on transformed scales](https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1011393) as well as the Vignettes ([Getting started](https://epiforecasts.io/scoringutils/articles/scoringutils.html), [Details on the metrics implemented](https://epiforecasts.io/scoringutils/articles/metric-details.html) and [Scoring forecasts directly](https://epiforecasts.io/scoringutils/articles/scoring-forecasts-directly.html)). The `scoringutils` package offers convenient automated forecast evaluation through the function `score()`. The function operates on data.frames (it uses `data.table` internally for speed and efficiency) and can easily be integrated in a workflow based on `dplyr` or `data.table`. It also provides experienced users with a set of reliable lower-level scoring metrics operating on vectors/matrices they can build upon in other applications. In addition it implements a wide range of flexible plots designed to cover many use cases. From d3fb96ee7444b00d5d210553f7154a3328276293 Mon Sep 17 00:00:00 2001 From: GitHub Action Date: Thu, 7 Dec 2023 13:55:09 +0000 Subject: [PATCH 5/5] Automatic readme update --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index de5214c86..96d12d06c 100644 --- a/README.md +++ b/README.md @@ -20,7 +20,7 @@ You can find additional information and examples in the papers [Evaluating Forecasts with scoringutils in R](https://arxiv.org/abs/2205.07090) [Scoring epidemiological forecasts on transformed -scales](https://www.medrxiv.org/content/10.1101/2023.01.23.23284722v1) +scales](https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1011393) as well as the Vignettes ([Getting started](https://epiforecasts.io/scoringutils/articles/scoringutils.html), [Details on the metrics