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Identification of changes in Amazon rainforests from surface albedo #103

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FaezehKarimian opened this issue Jun 7, 2024 · 20 comments · May be fixed by #268
Open

Identification of changes in Amazon rainforests from surface albedo #103

FaezehKarimian opened this issue Jun 7, 2024 · 20 comments · May be fixed by #268
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wp5

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@FaezehKarimian
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FaezehKarimian commented Jun 7, 2024 •
edited by malmans2
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Data Type

Satellite ECVs - Land Biosphere

Assessment Category

Consistency Assessment

Dataset Name

satellite-albedo

Question Number

2

Workflow ID

eqctier3-da04f5a8-0586-4797-bc29-e7215a1b5400

Zipped Notebook

ALBEDO_Amazon rain forests.zip

Environment

name: wp5
channels:

  • conda-forge
    dependencies:
  • _libgcc_mutex=0.1=conda_forge
  • _openmp_mutex=4.5=2_gnu
  • affine=2.4.0=pyhd8ed1ab_0
  • aiohttp=3.9.5=py311h459d7ec_0
  • aiosignal=1.3.1=pyhd8ed1ab_0
  • alsa-lib=1.2.11=hd590300_1
  • annotated-types=0.6.0=pyhd8ed1ab_0
  • ansicolors=1.1.8=pyhd8ed1ab_0
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  • argon2-cffi-bindings=21.2.0=py311h459d7ec_4
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  • asciitree=0.3.3=py_2
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  • aws-c-sdkutils=0.1.15=hce8ee76_3
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  • aws-crt-cpp=0.26.8=h2150271_2
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  • hdf4=4.2.15=h2a13503_7
  • hdf5=1.14.3=nompi_h4f84152_101
  • hpack=4.0.0=pyh9f0ad1d_0
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  • libarrow-dataset=15.0.2=hbabe93e_6_cpu
  • libarrow-flight=15.0.2=hc4f8a93_6_cpu
  • libarrow-flight-sql=15.0.2=he4f5ca8_6_cpu
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  • pyarrow-hotfix=0.6=pyhd8ed1ab_0
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  • pydoe=0.3.8=py_1
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  • python=3.11.9=hb806964_0_cpython
  • python-dateutil=2.9.0=pyhd8ed1ab_0
  • python-dotenv=1.0.1=pyhd8ed1ab_0
  • python-eccodes=1.7.0=py311h1f0f07a_1
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  • python-json-logger=2.0.7=pyhd8ed1ab_0
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  • python_abi=3.11=4_cp311
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  • qt-main=5.15.8=hc9dc06e_21
  • rasterio=1.3.10=py311h375a7ea_0
  • rdma-core=51.0=hd3aeb46_0
  • re2=2023.09.01=h7f4b329_2
  • readline=8.2=h8228510_1
  • referencing=0.35.1=pyhd8ed1ab_0
  • regionmask=0.12.1=pyhd8ed1ab_0
  • requests=2.31.0=pyhd8ed1ab_0
  • rfc3339-validator=0.1.4=pyhd8ed1ab_0
  • rfc3986-validator=0.1.1=pyh9f0ad1d_0
  • rich=13.7.1=pyhd8ed1ab_0
  • rioxarray=0.15.5=pyhd8ed1ab_0
  • rpds-py=0.18.1=py311h5ecf98a_0
  • rtree=1.2.0=py311h3bb2b0f_0
  • s2n=1.4.12=h06160fa_0
  • scikit-learn=1.4.2=py311hc009520_0
  • scipy=1.13.0=py311h517d4fd_1
  • seaborn=0.13.2=hd8ed1ab_2
  • seaborn-base=0.13.2=pyhd8ed1ab_2
  • send2trash=1.8.3=pyh0d859eb_0
  • setuptools=69.5.1=pyhd8ed1ab_0
  • shapely=2.0.4=py311h2032efe_0
  • shellingham=1.5.4=pyhd8ed1ab_0
  • simpervisor=1.0.0=pyhd8ed1ab_0
  • sip=6.7.12=py311hb755f60_0
  • six=1.16.0=pyh6c4a22f_0
  • snappy=1.2.0=hdb0a2a9_1
  • sniffio=1.3.1=pyhd8ed1ab_0
  • snuggs=1.4.7=py_0
  • sortedcontainers=2.4.0=pyhd8ed1ab_0
  • soupsieve=2.5=pyhd8ed1ab_1
  • sparse=0.15.1=pyhd8ed1ab_1
  • spdlog=1.13.0=hd2e6256_0
  • sqlalchemy=2.0.30=py311h331c9d8_0
  • sqlite=3.45.3=h2c6b66d_0
  • stack_data=0.6.2=pyhd8ed1ab_0
  • statsmodels=0.14.1=py311h1f0f07a_0
  • structlog=24.1.0=pyhd8ed1ab_0
  • tblib=3.0.0=pyhd8ed1ab_0
  • tenacity=8.2.3=pyhd8ed1ab_0
  • terminado=0.18.1=pyh0d859eb_0
  • threadpoolctl=3.5.0=pyhc1e730c_0
  • tiledb=2.22.0=h27f064a_3
  • tinycss2=1.3.0=pyhd8ed1ab_0
  • tk=8.6.13=noxft_h4845f30_101
  • toml=0.10.2=pyhd8ed1ab_0
  • tomli=2.0.1=pyhd8ed1ab_0
  • toolz=0.12.1=pyhd8ed1ab_0
  • tornado=6.4=py311h459d7ec_0
  • tqdm=4.66.4=pyhd8ed1ab_0
  • traitlets=5.14.3=pyhd8ed1ab_0
  • typer=0.12.3=pyhd8ed1ab_0
  • typer-slim=0.12.3=pyhd8ed1ab_0
  • typer-slim-standard=0.12.3=hd8ed1ab_0
  • types-python-dateutil=2.9.0.20240316=pyhd8ed1ab_0
  • typing-extensions=4.11.0=hd8ed1ab_0
  • typing_extensions=4.11.0=pyha770c72_0
  • typing_utils=0.1.0=pyhd8ed1ab_0
  • tzcode=2024a=h3f72095_0
  • tzdata=2024a=h0c530f3_0
  • ucx=1.15.0=ha691c75_8
  • udunits2=2.2.28=h40f5838_3
  • uri-template=1.3.0=pyhd8ed1ab_0
  • uriparser=0.9.8=hac33072_0
  • urllib3=2.2.1=pyhd8ed1ab_0
  • wcwidth=0.2.13=pyhd8ed1ab_0
  • webcolors=1.13=pyhd8ed1ab_0
  • webencodings=0.5.1=pyhd8ed1ab_2
  • websocket-client=1.8.0=pyhd8ed1ab_0
  • wheel=0.43.0=pyhd8ed1ab_1
  • xarray=2024.3.0=pyhd8ed1ab_0
  • xarraymannkendall=1.4.5=pyhd8ed1ab_0
  • xcb-util=0.4.0=hd590300_1
  • xcb-util-image=0.4.0=h8ee46fc_1
  • xcb-util-keysyms=0.4.0=h8ee46fc_1
  • xcb-util-renderutil=0.3.9=hd590300_1
  • xcb-util-wm=0.4.1=h8ee46fc_1
  • xerces-c=3.2.5=hac6953d_0
  • xesmf=0.8.5=pyhd8ed1ab_0
  • xhistogram=0.3.2=pyhd8ed1ab_0
  • xkeyboard-config=2.41=hd590300_0
  • xorg-fixesproto=5.0=h7f98852_1002
  • xorg-inputproto=2.3.2=h7f98852_1002
  • xorg-kbproto=1.0.7=h7f98852_1002
  • xorg-libice=1.1.1=hd590300_0
  • xorg-libsm=1.2.4=h7391055_0
  • xorg-libx11=1.8.9=h8ee46fc_0
  • xorg-libxau=1.0.11=hd590300_0
  • xorg-libxdmcp=1.1.3=h7f98852_0
  • xorg-libxext=1.3.4=h0b41bf4_2
  • xorg-libxfixes=5.0.3=h7f98852_1004
  • xorg-libxi=1.7.10=h7f98852_0
  • xorg-libxrender=0.9.11=hd590300_0
  • xorg-renderproto=0.11.1=h7f98852_1002
  • xorg-xextproto=7.3.0=h0b41bf4_1003
  • xorg-xf86vidmodeproto=2.3.1=h7f98852_1002
  • xorg-xproto=7.0.31=h7f98852_1007
  • xskillscore=0.0.26=pyhd8ed1ab_0
  • xyzservices=2024.4.0=pyhd8ed1ab_0
  • xz=5.2.6=h166bdaf_0
  • yaml=0.2.5=h7f98852_2
  • yarl=1.9.4=py311h459d7ec_0
  • zarr=2.18.0=pyhd8ed1ab_0
  • zeromq=4.3.5=h75354e8_3
  • zict=3.0.0=pyhd8ed1ab_0
  • zipp=3.17.0=pyhd8ed1ab_0
  • zlib=1.2.13=hd590300_5
  • zstd=1.5.6=ha6fb4c9_0
  • pip:
    • c3s-eqc-automatic-quality-control==0.1.2.dev109+gacaba21
    • cacholote==0.10.0
    • cads-toolbox==0.0.2b0
    • cgul==0.0.4
    • coucal==0.0.1b3
    • emohawk==0.0.4b0
    • kaleido==0.2.1
    • pymannkendall==1.4.3
      prefix: /data/common/miniforge3/envs/wp5

Anything else we need to know?

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@malmans2
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Hi @FaezehKarimian,

The workflow ID does not look right. In the CIM you should see a clear message that shows the Workflow ID.
The correct ID looks like this: eqctier3-1123e4567-e89b-12d3-a456-42665544000

Could you please edit the workflow ID in all issue you've opened in the last couple of days? Let me know when you've done it.

@FaezehKarimian
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FaezehKarimian commented Jun 10, 2024 via email

@malmans2
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Hi @FaezehKarimian,

I've sent you all permalinks with exception of this one. It looks like something went wrong while uploading the file.
Could you please try again? Let me know when you've done it.

@malmans2 malmans2 mentioned this issue Jun 10, 2024
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@FaezehKarimian
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FaezehKarimian commented Jun 10, 2024 via email

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I'm not sure what notebook you are referring to. If it's not this one, please comment in the issue corresponding to the problematic notebook.

The notebook uploaded here is not right, so you definitely need to re-upload this one.

@FaezehKarimian
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Could you please check if it is correct now? thanks.

@malmans2
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Yes, it's correct now.

Here is the permalink: https://github.com/ecmwf-projects/c3s2-eqc-quality-assessment/blob/920d7dda72b85d67572f970f7c2ca53a8f9ea7f8/Satellite_ECVs/Atmospheric_composition_ECVs/satellite_satellite-albedo_consistency-assessment_q02.ipynb

Please make sure that the notebook name is correct.

If you need to make modifications (e.g., to address the reviewer's comment), please share here the new version of the notebook and I will provide a new permalink.

Let me know when the notebook is accepted, I will merge the PR into main.

@FaezehKarimian
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Yes, it's correct now.

Here is the permalink: https://github.com/ecmwf-projects/c3s2-eqc-quality-assessment/blob/920d7dda72b85d67572f970f7c2ca53a8f9ea7f8/Satellite_ECVs/Atmospheric_composition_ECVs/satellite_satellite-albedo_consistency-assessment_q02.ipynb

Please make sure that the notebook name is correct.

If you need to make modifications (e.g., to address the reviewer's comment), please share here the new version of the notebook and I will provide a new permalink.

Let me know when the notebook is accepted, I will merge the PR into main.

@FaezehKarimian
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FaezehKarimian commented Jun 10, 2024 •
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Hi Mattia, Could you please provide the link for this zipped NB?
ALBEDO_Amazon rainforests.zip

@malmans2
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Here it is: https://github.com/ecmwf-projects/c3s2-eqc-quality-assessment/blob/02614f31f5f59b6771ce44f5e6efb512937cb60b/Satellite_ECVs/Atmospheric_composition_ECVs/satellite_satellite-albedo_consistency-assessment_q02.ipynb

@FaezehKarimian FaezehKarimian changed the title Identification of changes in Amazon rain forests from surface albedo Identification of changes in Amazon rainforests from surface albedo Jun 11, 2024
@FaezehKarimian
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Mattia could you please create a link for this Nb?
Sorry for reiterating my query.

ALBEDO_Amazon rainforests.zip

@malmans2
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Here it is: https://github.com/ecmwf-projects/c3s2-eqc-quality-assessment/blob/3217962ba603517723d650d8e978e643d18e90fb/Satellite_ECVs/Atmospheric_composition_ECVs/satellite_satellite-albedo_consistency-assessment_q02.ipynb

@malmans2 malmans2 added the wp5 label Jun 12, 2024
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Hi @FaezehKarimian,

I think this workflow ID also changed. Could you please send me the latest?

@FaezehKarimian
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Hi @FaezehKarimian,

I think this workflow ID also changed. Could you please send me the latest?

Hi @malmans2
Yes, it also changed, but it is not in my CIM tasks now, so I don't have access to the new workflow right now. But I sent my request for reopen execution. When I access it, I will update you and send the new workflow ID. 

@malmans2
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OK, no rush.

@FaezehKarimian
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Mattia could you please create a link for this Nb? I also added the new workflow ID.

Last_ V_ALBEDO_Amazon rainforests.zip

Workflow: eqctier3-da04f5a8-0586-4797-bc29-e7215a1b5400

@malmans2 malmans2 linked a pull request Dec 2, 2024 that will close this issue
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malmans2 commented Dec 2, 2024 •
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Hi @FaezehKarimian,

I had to make a couple of changes to align with the template.

  • Level 2 headings must be used for the sections defined in the template only. Therefore, I change some sections to level 3 heading (e.g., ### 1. Download surface albedo)
  • The Quality assessment statement was missing the admonition syntax shown in the template

Permalink: https://github.com/ecmwf-projects/c3s2-eqc-quality-assessment/blob/07dc592744aa7d705c5c6cd4374a597d0997dac4/Satellite_ECVs/Atmospheric_Composition/satellite_satellite-albedo_consistency-assessment_q02.ipynb

Please ensure that the notebook name is correct. If you need to make any modifications (e.g., addressing the reviewer's comments), please share the new version of the notebook here, and I will provide a new permalink. Let me know once the notebook is accepted, and I will merge the PR into the main branch.

@FaezehKarimian
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FaezehKarimian commented Dec 2, 2024 •
edited by malmans2
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Hi @FaezehKarimian,

I had to make a couple of changes to align with the template.

  • Level 2 headings must be used for the sections defined in the template only. Therefore, I change some sections to level 3 heading (e.g., ### 1. Download surface albedo)
  • The Quality assessment statement was missing the admonition syntax shown in the template

Permalink: https://github.com/ecmwf-projects/c3s2-eqc-quality-assessment/blob/07dc592744aa7d705c5c6cd4374a597d0997dac4/Satellite_ECVs/Atmospheric_Composition/satellite_satellite-albedo_consistency-assessment_q02.ipynb

Please ensure that the notebook name is correct. If you need to make any modifications (e.g., addressing the reviewer's comments), please share the new version of the notebook here, and I will provide a new permalink. Let me know once the notebook is accepted, and I will merge the PR into the main branch.

Thank you @malmans2

@malmans2
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malmans2 commented Jan 7, 2025

Hi @FaezehKarimian,

I'm going to edit the answer you gave in the form in your first comment and move the notebook from Atmospheric Composition to Land Biosphere. See: #268 (comment)

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malmans2 commented Jan 7, 2025

Here is the new permalink: https://github.com/ecmwf-projects/c3s2-eqc-quality-assessment/blob/4d7b032628e42f5e056ce60f8d4ac7a1d8db32d6/Satellite_ECVs/Land_Biosphere/satellite_satellite-albedo_consistency-assessment_q02.ipynb

PREVIEW

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eqctier3-da04f5a8-0586-4797-bc29-e7215a1b5400 ecmwf-projects/c3s2-eqc-quality-assessment
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