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CERRA Temperature Extremes #14

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chiaravol opened this issue Mar 16, 2024 · 14 comments · May be fixed by #261
Open

CERRA Temperature Extremes #14

chiaravol opened this issue Mar 16, 2024 · 14 comments · May be fixed by #261
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wp5

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@chiaravol
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chiaravol commented Mar 16, 2024 •
edited by malmans2
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Data Type

Reanalyses

Assessment Category

Climate And Weather Extremes

Dataset Name

reanalysis-cerra-single-levels

Question Number

2

Workflow ID

eqctier3-dee67611-dfc1-4fbc-86e2-284ff4536835

Zipped Notebook

C3S_520_D5_3_7a_NB2_CERRA_extremes.ipynb.zip

Environment

name: wp5
channels:
  - conda-forge
dependencies:
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  - _openmp_mutex=4.5=2_gnu
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  - rich=13.7.0=pyhd8ed1ab_0
  - rioxarray=0.15.1=pyhd8ed1ab_0
  - rpds-py=0.18.0=py311h46250e7_0
  - rtree=1.2.0=py311h3bb2b0f_0
  - s2n=1.4.3=h06160fa_0
  - scikit-learn=1.4.0=py311hc009520_0
  - scipy=1.12.0=py311h64a7726_2
  - seaborn=0.13.2=hd8ed1ab_0
  - seaborn-base=0.13.2=pyhd8ed1ab_0
  - send2trash=1.8.2=pyh41d4057_0
  - setuptools=69.0.3=pyhd8ed1ab_0
  - shapely=2.0.2=py311h2032efe_1
  - shellingham=1.5.4=pyhd8ed1ab_0
  - simpervisor=1.0.0=pyhd8ed1ab_0
  - sip=6.7.12=py311hb755f60_0
  - six=1.16.0=pyh6c4a22f_0
  - snappy=1.1.10=h9fff704_0
  - sniffio=1.3.0=pyhd8ed1ab_0
  - snuggs=1.4.7=py_0
  - sortedcontainers=2.4.0=pyhd8ed1ab_0
  - soupsieve=2.5=pyhd8ed1ab_1
  - sparse=0.15.1=pyhd8ed1ab_1
  - sqlalchemy=2.0.27=py311h459d7ec_0
  - sqlite=3.45.1=h2c6b66d_0
  - stack_data=0.6.2=pyhd8ed1ab_0
  - statsmodels=0.14.1=py311h1f0f07a_0
  - structlog=24.1.0=pyhd8ed1ab_0
  - tblib=3.0.0=pyhd8ed1ab_0
  - tenacity=8.2.3=pyhd8ed1ab_0
  - terminado=0.18.0=pyh0d859eb_0
  - textwrap3=0.9.2=py_0
  - threadpoolctl=3.2.0=pyha21a80b_0
  - tiledb=2.19.1=h4386cac_0
  - tinycss2=1.2.1=pyhd8ed1ab_0
  - tk=8.6.13=noxft_h4845f30_101
  - toml=0.10.2=pyhd8ed1ab_0
  - tomli=2.0.1=pyhd8ed1ab_0
  - toolz=0.12.1=pyhd8ed1ab_0
  - tornado=6.3.3=py311h459d7ec_1
  - tqdm=4.66.2=pyhd8ed1ab_0
  - traitlets=5.14.1=pyhd8ed1ab_0
  - typer=0.9.0=pyhd8ed1ab_0
  - types-python-dateutil=2.8.19.20240106=pyhd8ed1ab_0
  - typing-extensions=4.9.0=hd8ed1ab_0
  - typing_extensions=4.9.0=pyha770c72_0
  - typing_utils=0.1.0=pyhd8ed1ab_0
  - tzcode=2024a=h3f72095_0
  - tzdata=2024a=h0c530f3_0
  - ucx=1.15.0=h75e419f_3
  - udunits2=2.2.28=h40f5838_3
  - uri-template=1.3.0=pyhd8ed1ab_0
  - uriparser=0.9.7=hcb278e6_1
  - urllib3=2.2.0=pyhd8ed1ab_0
  - wcwidth=0.2.13=pyhd8ed1ab_0
  - webcolors=1.13=pyhd8ed1ab_0
  - webencodings=0.5.1=pyhd8ed1ab_2
  - websocket-client=1.7.0=pyhd8ed1ab_0
  - wheel=0.42.0=pyhd8ed1ab_0
  - xarray=2024.1.1=pyhd8ed1ab_0
  - xarraymannkendall=1.4.5=pyhd8ed1ab_0
  - xcb-util=0.4.0=hd590300_1
  - xcb-util-image=0.4.0=h8ee46fc_1
  - xcb-util-keysyms=0.4.0=h8ee46fc_1
  - xcb-util-renderutil=0.3.9=hd590300_1
  - xcb-util-wm=0.4.1=h8ee46fc_1
  - xerces-c=3.2.5=hac6953d_0
  - xesmf=0.8.2=pyhd8ed1ab_0
  - xhistogram=0.3.2=pyhd8ed1ab_0
  - xkeyboard-config=2.41=hd590300_0
  - xorg-fixesproto=5.0=h7f98852_1002
  - xorg-inputproto=2.3.2=h7f98852_1002
  - xorg-kbproto=1.0.7=h7f98852_1002
  - xorg-libice=1.1.1=hd590300_0
  - xorg-libsm=1.2.4=h7391055_0
  - xorg-libx11=1.8.7=h8ee46fc_0
  - xorg-libxau=1.0.11=hd590300_0
  - xorg-libxdmcp=1.1.3=h7f98852_0
  - xorg-libxext=1.3.4=h0b41bf4_2
  - xorg-libxfixes=5.0.3=h7f98852_1004
  - xorg-libxi=1.7.10=h7f98852_0
  - xorg-libxrender=0.9.11=hd590300_0
  - xorg-renderproto=0.11.1=h7f98852_1002
  - xorg-xextproto=7.3.0=h0b41bf4_1003
  - xorg-xf86vidmodeproto=2.3.1=h7f98852_1002
  - xorg-xproto=7.0.31=h7f98852_1007
  - xskillscore=0.0.24=pyhd8ed1ab_0
  - xyzservices=2023.10.1=pyhd8ed1ab_0
  - xz=5.2.6=h166bdaf_0
  - yaml=0.2.5=h7f98852_2
  - yarl=1.9.4=py311h459d7ec_0
  - zarr=2.16.1=pyhd8ed1ab_0
  - zeromq=4.3.5=h59595ed_0
  - zict=3.0.0=pyhd8ed1ab_0
  - zipp=3.17.0=pyhd8ed1ab_0
  - zlib=1.2.13=hd590300_5
  - zstd=1.5.5=hfc55251_0
  - pip:
      - c3s-eqc-automatic-quality-control==0.1.2.dev103+gaf19fc1
      - cacholote==0.7.2
      - cads-toolbox==0.0.2b0
      - cgul==0.0.4
      - coucal==0.0.1b3
      - emohawk==0.0.4b0
      - kaleido==0.2.1
      - pymannkendall==1.4.3
prefix: /data/common/miniforge3/envs/wp5

Anything else we need to know?

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@malmans2 malmans2 mentioned this issue Mar 18, 2024
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Here is the permalink: https://github.com/ecmwf-projects/c3s2-eqc-quality-assessment/blob/fadc27d417e6e5dcac924b7834fce65f07e641a1/Reanalyses/reanalysis_reanalysis-cerra-single-levels_climate-and-weather-extremes_q02.ipynb

Please make sure that the notebook name is correct.

If you need to make modifications, please share here the new version of the notebook and I will provide a new permalink.
Let me know when the notebook is accepted, I will merge the PR into main.

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Hi @malmans2 I don't not know whether it changes something in the definition of the permalink, but we realized that this notebook was initially associated to a wrong dataset (CERRA-Land instead of CERRA).

A new task has been created with the correct data catalogue.

The correct task ID is: eb8a422d-00b2-11ef-b710-2e9677d436a1

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malmans2 commented May 6, 2024

Hi @sandrocalmanti,

Can we close this issue in favour of #58? Or are they different notebooks?

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@malmans2 #58 is a different notebook. We are addressing comments, both here and in #58 so we have to keep both.

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malmans2 commented May 6, 2024

Got it!

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malmans2 commented May 6, 2024

Hi @malmans2 I don't not know whether it changes something in the definition of the permalink, but we realized that this notebook was initially associated to a wrong dataset (CERRA-Land instead of CERRA).

A new task has been created with the correct data catalogue.

The correct task ID is: eb8a422d-00b2-11ef-b710-2e9677d436a1

No worries about the new task ID. In the future, when everything will be more stable, you'll use the workflow ID. The workflow ID is constant and does not change like tasks.

Is the Dataset Name provided in the very fist comment correct? (reanalysis-cerra-single-levels)

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Yes, that's correct.

@malmans2 malmans2 added the wp5 label May 10, 2024
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malmans2 commented May 10, 2024 •
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Hi @sandrocalmanti @chiaravol,

Unfortunately, next time you'll run this notebook you'll find out that there's a small bug.
The property _gridliners has been deprecated in the latest version of cartopy. That's my fault! We should not be using private properties.

Anyways, the fix is quite simple. I already implemented in the template of this notebook. See: bopen/c3s-eqc-toolbox-template@675c8b2
Next time you ask for a permalink, make sure that the fix is implemented.
If you have problems implementing the fix, let me know!

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sandrocalmanti commented May 10, 2024 •
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I just got this error on the parent notebook on CERRA climatology and was about to ask.

Fixing bugs before asking ... that's efficiency.

Thank you @malmans2

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@malmans2 here's the updated notebook on CERRA-extremes

C3S_520_D5_3_7a_NB2_CERRA_extremes-v2.zip

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Here is the permalink: https://github.com/ecmwf-projects/c3s2-eqc-quality-assessment/blob/a32652eae902e06c78925fe055c6763c47bd4384/Reanalyses/reanalysis_reanalysis-cerra-single-levels_climate-and-weather-extremes_q02.ipynb

Unfortunately, right now GitHub is having issues rendering jupyter notebooks. It's not a problem in our project, but a GitHub issue I'm seeing for all notebooks on GitHub. You shouldn't have problems in the CIM as Predictia implemented a custom rendering.

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Dear @malmans2, here's the updated NB for CERRA on climate extremes

reanalysis_reanalysis-cerra-single-levels_climate-and-weather-extremes_q01.zip

This is the workflow ID:

Task: 8f4e1d56-86ad-11ef-ba42-3ada602b6be8
Workflow: eqctier3-dee67611-dfc1-4fbc-86e2-284ff4536835

@malmans2 malmans2 linked a pull request Nov 5, 2024 that will close this issue
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malmans2 commented Nov 5, 2024

Permalink: https://github.com/ecmwf-projects/c3s2-eqc-quality-assessment/blob/1d08e6fe99d07786150468b8ed3fbe97de15d3ff/Reanalyses/reanalysis_reanalysis-cerra-single-levels_climate-and-weather-extremes_q02.ipynb

Please ensure that the notebook name is correct. If you need to make any modifications (e.g., addressing the reviewer's comments), please share the new version of the notebook here, and I will provide a new permalink. Let me know once the notebook is accepted, and I will merge the PR into the main branch.

PREVIEW

I had to make a minor change: You should use the usual reference syntax for the B-Open software references as well. I.e., (idBOpen)=

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malmans2 commented Nov 5, 2024 •
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Actually, one more issue. By chance I noticed you always referenced section-1 in the Methodology section.
It's fixed now.

Permalink: https://github.com/ecmwf-projects/c3s2-eqc-quality-assessment/blob/0c9b3671402b48e16fbd94e37c486bc5150a3c1b/Reanalyses/reanalysis_reanalysis-cerra-single-levels_climate-and-weather-extremes_q02.ipynb

PREVIEW

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eqctier3-dee67611-dfc1-4fbc-86e2-284ff4536835 ecmwf-projects/c3s2-eqc-quality-assessment
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@malmans2 @sandrocalmanti @chiaravol