From 10b61a5e9d6d82e22dede94363e95c9a199d126f Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Petr=20Kr=C3=A1l?= <petr@inuits.eu>
Date: Fri, 21 Feb 2025 11:04:31 +0100
Subject: [PATCH] adding easyconfigs: Pysam-0.20.0-GCC-12.3.0-Python-2.7.18.eb,
 Cython-0.29.37-GCCcore-12.3.0-Python-2.7.18.eb

---
 ...on-0.29.37-GCCcore-12.3.0-Python-2.7.18.eb | 41 +++++++++++++++++++
 .../Pysam-0.20.0-GCC-12.3.0-Python-2.7.18.eb  | 31 ++++++++++++++
 2 files changed, 72 insertions(+)
 create mode 100644 easybuild/easyconfigs/c/Cython/Cython-0.29.37-GCCcore-12.3.0-Python-2.7.18.eb
 create mode 100644 easybuild/easyconfigs/p/Pysam/Pysam-0.20.0-GCC-12.3.0-Python-2.7.18.eb

diff --git a/easybuild/easyconfigs/c/Cython/Cython-0.29.37-GCCcore-12.3.0-Python-2.7.18.eb b/easybuild/easyconfigs/c/Cython/Cython-0.29.37-GCCcore-12.3.0-Python-2.7.18.eb
new file mode 100644
index 000000000000..0e787707e92c
--- /dev/null
+++ b/easybuild/easyconfigs/c/Cython/Cython-0.29.37-GCCcore-12.3.0-Python-2.7.18.eb
@@ -0,0 +1,41 @@
+easyblock = 'PythonPackage'
+
+name = 'Cython'
+version = '0.29.37'
+versionsuffix = '-Python-%(pyver)s'
+
+homepage = 'https://cython.org/'
+description = """
+Cython is an optimising static compiler for both the Python programming
+language and the extended Cython programming language (based on Pyrex).
+"""
+docurls = [
+    'https://cython.org/#documentation',
+    'https://github.com/cython/cython',
+]
+
+toolchain = {'name': 'GCCcore', 'version': '12.3.0'}
+
+sources = [SOURCE_WHL]
+checksums = ['95f1d6a83ef2729e67b3fa7318c829ce5b07ac64c084cd6af11c228e0364662c']
+
+builddependencies = [
+    ('binutils', '2.40'),
+]
+
+dependencies = [
+    ('Python', '2.7.18'),
+]
+
+download_dep_fail = True
+use_pip = True
+sanity_pip_check = True
+
+sanity_check_paths = {
+    'files': ['bin/cygdb', 'bin/cython', 'bin/cythonize'],
+    'dirs': ['lib/python%(pyshortver)s/site-packages'],
+}
+
+sanity_check_commands = ["cython --version"]
+
+moduleclass = 'lang'
diff --git a/easybuild/easyconfigs/p/Pysam/Pysam-0.20.0-GCC-12.3.0-Python-2.7.18.eb b/easybuild/easyconfigs/p/Pysam/Pysam-0.20.0-GCC-12.3.0-Python-2.7.18.eb
new file mode 100644
index 000000000000..6f30d071e195
--- /dev/null
+++ b/easybuild/easyconfigs/p/Pysam/Pysam-0.20.0-GCC-12.3.0-Python-2.7.18.eb
@@ -0,0 +1,31 @@
+easyblock = 'PythonPackage'
+
+name = 'Pysam'
+version = '0.20.0'
+versionsuffix = '-Python-%(pyver)s'
+
+homepage = 'https://github.com/pysam-developers/pysam'
+description = """Pysam is a python module for reading and manipulating Samfiles. 
+ It's a lightweight wrapper of the samtools C-API. Pysam also includes an interface for tabix."""
+
+toolchain = {'name': 'GCC', 'version': '12.3.0'}
+toolchainopts = {'pic': True}
+
+source_urls = ['https://github.com/pysam-developers/pysam/archive/']
+sources = ['v%(version)s.tar.gz']
+checksums = ['5a25d95b986c2cb9f5040b9df4e1d93ce9a8bc3af5a956b1317416ed05269f60']
+
+dependencies = [
+    ('Python', '2.7.18'),
+    ('Cython', '0.29.37', versionsuffix),
+    ('ncurses', '6.4'),
+    ('cURL', '8.0.1'),
+    ('XZ', '5.4.2'),
+]
+
+download_dep_fail = True
+use_pip = True
+
+sanity_pip_check = True
+
+moduleclass = 'bio'