diff --git a/easybuild/easyconfigs/a/Arrow/Arrow-8.0.0-foss-2022a.eb b/easybuild/easyconfigs/a/Arrow/Arrow-8.0.0-foss-2022a.eb new file mode 100644 index 000000000000..84ee66a73e28 --- /dev/null +++ b/easybuild/easyconfigs/a/Arrow/Arrow-8.0.0-foss-2022a.eb @@ -0,0 +1,69 @@ +easyblock = 'CMakeMake' + +name = 'Arrow' +version = '8.0.0' + +homepage = 'https://arrow.apache.org' +description = """Apache Arrow (incl. PyArrow Python bindings), a cross-language development platform + for in-memory data.""" + +toolchain = {'name': 'foss', 'version': '2022a'} + +source_urls = ['https://archive.apache.org/dist/%(namelower)s/%(namelower)s-%(version)s'] +sources = ['apache-arrow-%(version)s.tar.gz'] +checksums = ['ad9a05705117c989c116bae9ac70492fe015050e1b80fb0e38fde4b5d863aaa3'] + +builddependencies = [ + ('CMake', '3.23.1'), + ('Autotools', '20220317'), + ('flex', '2.6.4'), + ('Bison', '3.8.2'), + ('pkgconf', '1.8.0'), +] + +# Arrow strongly prefers included jemalloc, so not including it as a dependency +dependencies = [ + ('Python', '3.10.4'), + ('SciPy-bundle', '2022.05'), # for numpy + ('Boost', '1.79.0'), + ('lz4', '1.9.3'), + ('zlib', '1.2.12'), + ('bzip2', '1.0.8'), + ('zstd', '1.5.2'), + ('snappy', '1.1.9'), + ('RapidJSON', '1.1.0'), + ('RE2', '2022-06-01'), + ('utf8proc', '2.7.0'), +] + +start_dir = 'cpp' + +# see https://arrow.apache.org/docs/developers/python.html +configopts = "-DARROW_PYTHON=on -DARROW_PARQUET=ON -DARROW_WITH_SNAPPY=ON " +configopts += "-DCMAKE_INSTALL_LIBDIR=lib -DPython3_ROOT_DIR=$EBROOTPYTHON " +configopts += "-DARROW_WITH_ZLIB=ON -DARROW_WITH_BZ2=ON -DARROW_WITH_ZSTD=ON -DARROW_WITH_LZ4=ON " +configopts += "-DZSTD_ROOT=$EBROOTZSTD " + +# also install Python bindings +local_install_pyarrow_cmds = "export PKG_CONFIG_PATH=%(installdir)s/lib/pkgconfig:$PKG_CONFIG_PATH && " +local_install_pyarrow_cmds += "export PYTHONPATH=%(installdir)s/lib/python%(pyshortver)s/site-packages:$PYTHONPATH && " +local_install_pyarrow_cmds += "cd %(builddir)s/*arrow-%(version)s/python && export XDG_CACHE_HOME=$TMPDIR && " +local_install_pyarrow_cmds += "sed -i 's/numpy==[0-9.]*/numpy/g' pyproject.toml && " +local_install_pyarrow_cmds += "Python3_ROOT_DIR=$EBROOTPYTHON " +local_install_pyarrow_cmds += "PYARROW_WITH_PARQUET=1 pip install --prefix %(installdir)s ." +postinstallcmds = [local_install_pyarrow_cmds] + +modextrapaths = {'PYTHONPATH': 'lib/python%(pyshortver)s/site-packages'} + +sanity_check_paths = { + 'files': ['lib/libarrow.a', 'lib/libarrow.%s' % SHLIB_EXT, + 'lib/libarrow_python.a', 'lib/libarrow_python.%s' % SHLIB_EXT], + 'dirs': ['include/arrow', 'lib/cmake/arrow', 'lib/pkgconfig', 'lib/python%(pyshortver)s/site-packages'], +} + +sanity_check_commands = [ + "python -c 'import pyarrow'", + "python -c 'import pyarrow.parquet'", +] + +moduleclass = 'data' diff --git a/easybuild/easyconfigs/a/arrow-R/arrow-R-8.0.0-foss-2022a-R-4.2.1.eb b/easybuild/easyconfigs/a/arrow-R/arrow-R-8.0.0-foss-2022a-R-4.2.1.eb new file mode 100644 index 000000000000..df3e4e8a0a2c --- /dev/null +++ b/easybuild/easyconfigs/a/arrow-R/arrow-R-8.0.0-foss-2022a-R-4.2.1.eb @@ -0,0 +1,34 @@ +easyblock = 'RPackage' + +name = 'arrow-R' +version = '8.0.0' +versionsuffix = '-R-%(rver)s' + +homepage = 'https://cran.r-project.org/web/packages/arrow' +description = "R interface to the Apache Arrow C++ library" + +toolchain = {'name': 'foss', 'version': '2022a'} + +source_urls = [ + 'https://cran.r-project.org/src/contrib/Archive/arrow', # package archive + 'https://cran.r-project.org/src/contrib/', # current version of packages + 'https://cran.freestatistics.org/src/contrib', # mirror alternative for current packages +] +sources = ['arrow_%(version)s.tar.gz'] +checksums = ['6c9aa08c68b7b39cb7d6b9394c0b94a566c0fe9a85cea61f5ed19e460bdb05ad'] + +dependencies = [ + ('R', '4.2.1'), + ('Arrow', '8.0.0'), +] + +preinstallopts = "export LIBARROW_BINARY=true && " + +sanity_check_paths = { + 'files': [], + 'dirs': ['arrow'], +} + +options = {'modulename': 'arrow'} + +moduleclass = 'tools' diff --git a/easybuild/easyconfigs/p/pkg-config/pkg-config-0.29.2-GCCcore-11.3.0.eb b/easybuild/easyconfigs/p/pkg-config/pkg-config-0.29.2-GCCcore-11.3.0.eb new file mode 100644 index 000000000000..894e86916453 --- /dev/null +++ b/easybuild/easyconfigs/p/pkg-config/pkg-config-0.29.2-GCCcore-11.3.0.eb @@ -0,0 +1,36 @@ +# pkgconf should be used in preference to pkg-config +# This is included for use only in software that fails to build when using pkgconf +easyblock = 'ConfigureMake' + +name = 'pkg-config' +version = '0.29.2' + +homepage = 'https://www.freedesktop.org/wiki/Software/pkg-config/' + +description = """ + pkg-config is a helper tool used when compiling applications and libraries. + It helps you insert the correct compiler options on the command line so an + application can use gcc -o test test.c `pkg-config --libs --cflags glib-2.0` + for instance, rather than hard-coding values on where to find glib (or other + libraries). +""" + +toolchain = {'name': 'GCCcore', 'version': '11.3.0'} + +source_urls = ['https://pkg-config.freedesktop.org/releases/'] +sources = [SOURCELOWER_TAR_GZ] +checksums = ['6fc69c01688c9458a57eb9a1664c9aba372ccda420a02bf4429fe610e7e7d591'] + +builddependencies = [('binutils', '2.38')] + +# don't use PAX, it might break. +tar_config_opts = True + +configopts = " --with-internal-glib" + +sanity_check_paths = { + 'files': ['bin/pkg-config'], + 'dirs': [], +} + +moduleclass = 'devel' diff --git a/easybuild/easyconfigs/r/R-bundle-Bioconductor/R-bundle-Bioconductor-3.15-foss-2022a-R-4.2.1.eb b/easybuild/easyconfigs/r/R-bundle-Bioconductor/R-bundle-Bioconductor-3.15-foss-2022a-R-4.2.1.eb new file mode 100644 index 000000000000..209068efaa57 --- /dev/null +++ b/easybuild/easyconfigs/r/R-bundle-Bioconductor/R-bundle-Bioconductor-3.15-foss-2022a-R-4.2.1.eb @@ -0,0 +1,1098 @@ +easyblock = 'Bundle' + +name = 'R-bundle-Bioconductor' +version = '3.15' +versionsuffix = '-R-%(rver)s' + +homepage = 'https://bioconductor.org' +description = """Bioconductor provides tools for the analysis and coprehension + of high-throughput genomic data.""" + +toolchain = {'name': 'foss', 'version': '2022a'} + +# lpsymphony fails to build with pkgconf, so stick to pkg-config +# error in: https://github.com/easybuilders/easybuild-easyconfigs/pull/15829#issuecomment-1178655286 +builddependencies = [('pkg-config', '0.29.2')] + +dependencies = [ + ('R', '4.2.1'), + ('Boost', '1.79.0'), # for mzR + ('GSL', '2.7'), # for flowClust + ('HDF5', '1.12.2'), # for rhdf5 + ('arrow-R', '8.0.0', versionsuffix), # required by RcisTarget +] + +exts_default_options = { + 'source_urls': [ + 'https://bioconductor.org/packages/3.15/bioc/src/contrib/', + 'https://bioconductor.org/packages/3.15/bioc/src/contrib/Archive/%(name)s', + 'https://bioconductor.org/packages/3.15/data/annotation/src/contrib/', + 'https://bioconductor.org/packages/3.15/data/experiment/src/contrib/', + 'https://cran.r-project.org/src/contrib/Archive/%(name)s', # package archive + 'https://cran.r-project.org/src/contrib/', # current version of packages + 'https://cran.freestatistics.org/src/contrib', # mirror alternative for current packages + ], + 'source_tmpl': '%(name)s_%(version)s.tar.gz' +} + +exts_defaultclass = 'RPackage' + +# check whether correct version is installed in extension filter +# (some versions in this bundle may be newer than the ones provided by R) +local_ext_version_check = "pkgver = packageVersion('%(ext_name)s'); if (pkgver != '%(ext_version)s') " +local_stop_msg = "stop('%(ext_name)s %(ext_version)s not installed, found ', pkgver, ' instead')" +exts_filter = ("R -q --no-save", "%s { %s }" % (local_ext_version_check, local_stop_msg)) + +# CRAN packages on which these Bioconductor packages depend are available in R module on which this depends +# !! order of packages is important !! +# packages updated on 7th July 2022 +exts_list = [ + ('BiocGenerics', '0.42.0', { + 'checksums': ['0cb6fa74a389693d253a9f61935d335fcfcc1dfe5acbba78b3cc43c1af5d6947'], + }), + ('Biobase', '2.56.0', { + 'checksums': ['7b49f4336b1b9323b02b6819ff3bb8347e47e696ec0802cc4d0758858e9fddd6'], + }), + ('S4Vectors', '0.34.0', { + 'checksums': ['9368ef6636862f02a7cca0022b94975a21a1a4ac434f7b44411c52d83e5c7e48'], + }), + ('IRanges', '2.30.0', { + 'checksums': ['1331cf39cab3d0e2233247bb6e9d439e0e804c2a3336c103cb195fb2802ddd41'], + }), + ('GenomeInfoDbData', '1.2.8', { + 'checksums': ['576750330a011c1eccb47c7154ca1b40ae4cd473fd7973f6c2955237a0729eb4'], + }), + ('GenomeInfoDb', '1.32.2', { + 'checksums': ['b0a7bed8527c89b04f96bcc169366c6b238b45d32fa760177ead6227165f67d8'], + }), + ('zlibbioc', '1.42.0', { + 'checksums': ['fbf78b33def67a1778e97c15c5161c095268c14baf14ab559dcaccd6a34c1e70'], + }), + ('XVector', '0.36.0', { + 'checksums': ['136e5bc29f3d64634eff01794cb7824171df2300721c3ac24ceba5233c5e7ab8'], + }), + ('Biostrings', '2.64.0', { + 'checksums': ['e8c1dfbeb4b00d1dec1234693ab5ed6152fdd93c3afabd84173cd1843e14e5eb'], + }), + ('KEGGREST', '1.36.2', { + 'checksums': ['fc7d4fcad2a08d5b8a7d4cc620a5ad3e2a588e406e4fa8fe5ef902e4111fc0e6'], + }), + ('AnnotationDbi', '1.58.0', { + 'checksums': ['96bf9c24b8401361c2c9d4efbf6f93a790becaba449edc06e5322116e9f19c95'], + }), + ('GenomicRanges', '1.48.0', { + 'checksums': ['d623d25b9eb20d4b48f42f6e30771101503b8e9e1592d76e310273ca54d81921'], + }), + ('BiocParallel', '1.30.3', { + 'checksums': ['22318a3b47b56492445c1f2125a4dcef6dbb40dd94c594863bbd26aa55e543e7'], + }), + ('Rhtslib', '1.28.0', { + 'checksums': ['4e48c8643e5d3429238ee76faa4c68ed8a7028e7f594c109ee75f5e994d17c1e'], + }), + ('Rsamtools', '2.12.0', { + 'checksums': ['20e860c61ef66f8e61f8de7f77c4a244439c8fe39286d080cd580417073894f2'], + }), + ('MatrixGenerics', '1.8.1', { + 'checksums': ['ee8c3c0eab964f505bd570c083e88218bb4d6342adb406f3efd2fbf8afa52bd2'], + }), + ('DelayedArray', '0.22.0', { + 'checksums': ['1ee707dc606f257020c2654b21305045f4da9dc2943e6246a0bd25f5f1302d86'], + }), + ('SummarizedExperiment', '1.26.1', { + 'checksums': ['697c5faf7620dbb336591463bcb027d45a297197ed012a13d0327aaaebc7740b'], + }), + ('GenomicAlignments', '1.32.0', { + 'checksums': ['71354a8f7b07283065bff8280558a15ddfc35a6d225de2d8f7c5214400a3d5c5'], + }), + ('ShortRead', '1.54.0', { + 'checksums': ['18ca2c82688c158cdc952436434d4a608000ec4c02b199a0925c6cb2500a030c'], + }), + ('graph', '1.74.0', { + 'checksums': ['e4d1389e5f148fa6ff55299b29f096bd9cfd5d772691a0298b53a027b9cc10ad'], + }), + ('affyio', '1.66.0', { + 'checksums': ['d7bd8ba9f3a24f6a74c28226765cecc6e917dbf1028cfa04dce6cfbfb1409ca5'], + }), + ('preprocessCore', '1.58.0', { + 'installopts': "--configure-args='--disable-threading'", + 'checksums': ['6e36ad18eae494105b88f5195493b8ac3decf1c588cb4cddf5cf6c0801b817eb'], + }), + ('BiocManager', '1.30.18', { + 'checksums': ['f763126b45614e1b83260da5311923eac50db24002f3c22fa5f667434a5b5c35'], + }), + ('affy', '1.74.0', { + 'checksums': ['87b54c76d72abd9a44041772914451ab426df6d4aac9b1e6e39254d2883f870a'], + }), + ('GO.db', '3.15.0', { + 'checksums': ['bac91d73c57f206fa5bc4a501a2aaf61b365cf411181ce44353370cdbc132d99'], + }), + ('limma', '3.52.2', { + 'checksums': ['c5ccd94d05286cfdbbe7e139281e2a6c41e62b3446e3e1da170e1157f1451755'], + }), + ('RBGL', '1.72.0', { + 'checksums': ['fe301943e9444a43ac14b874bd984931cd9b13f491b70b9ed58928da7742005e'], + }), + ('org.Hs.eg.db', '3.15.0', { + 'checksums': ['1dc9bb6019e0f0a222b9ec84a1c5870cdbca480f45d9ad08e35f77278baa3c5f'], + }), + ('AnnotationForge', '1.38.0', { + 'checksums': ['e8fffd592a364e0154c255964cbfd198b6f6f6b227c83ca4f4efa9d69b722ca3'], + }), + ('annaffy', '1.68.0', { + 'checksums': ['f8d532a12f6d21d7f5c2ef1025a74b75ab9b9ecf0ce66e0c24a310bab89d78b9'], + }), + ('gcrma', '2.68.0', { + 'checksums': ['cd380cfa86dfdddfca88b83a81a23ed03c3ec69a6790618dd24f8025f28b488d'], + }), + ('oligoClasses', '1.58.0', { + 'checksums': ['b3d5a3f276419c27b7e5f1b164713138098101ad67875194e2a5ba401f289dd4'], + }), + ('edgeR', '3.38.1', { + 'checksums': ['3356f4f1349267091db058367f2f74faf78b5a7b42dfc7c1f0af94604e1d23e1'], + }), + ('PFAM.db', '3.15.0', { + 'checksums': ['e7036a5f76779ab6e8a32eb659c54f52426c4824dee02903cffd85bed372720f'], + }), + ('perm', '1.0-0.2', { + 'checksums': ['729294987bb0f367c67c4bf4071464e097ec9a2bbdb2c63f19ebfb907c604aa0'], + }), + ('baySeq', '2.30.0', { + 'checksums': ['52d843b27f8d48b8119ded918fd88b17640c0271d8a07e66165a8ced9b9d1efb'], + }), + ('qvalue', '2.28.0', { + 'checksums': ['dcd72f19ed80eb22b27b04fef42d1472d3246f78b18d2414efd6b24659a97033'], + }), + ('impute', '1.70.0', { + 'checksums': ['22a7e1e1067a435e890d76cc9caaca806d2bcbffb7973207f1a646e0eff96085'], + }), + ('shinyFiles', '0.9.2', { + 'checksums': ['8fbe4b8e1478c5e5efdb8fddcbe210fd2275e61d9ff06efa1672f61dd3268ad0'], + }), + ('samr', '3.0', { + 'checksums': ['25f88ac002c2adce8881a562241bc12d683810a05defb553e8e3d4878f037506'], + }), + ('DEGseq', '1.50.0', { + 'checksums': ['2e84bf5351579f092df72afba90bab08a70c536e56400a05ae6d80ba1cec5ede'], + }), + ('hgu133plus2.db', '3.13.0', { + 'checksums': ['ddde58e777a8341536a664c7d4be874a2f395f8aaa019c1f738462a8ce74cc44'], + }), + ('illuminaio', '0.38.0', { + 'checksums': ['c240646e8cfe38456c7e223da4edaf8e4526678d887b896247fa129ed42960f6'], + }), + ('BiocIO', '1.6.0', { + 'checksums': ['b7f901ca3e6fa06171f839c088c8769a462533a3cf5b83eb7dabe64fb811489a'], + }), + ('restfulr', '0.0.15', { + 'checksums': ['40ff8f1fb2987af2223e1a855bb1680c5ce2143fbce7ebc42f1edb291f80e692'], + }), + ('rtracklayer', '1.56.1', { + 'checksums': ['9acadac5fface3639c779d9116cfaf20708fe200163b1c0e92af8e228c4e1e83'], + }), + ('filelock', '1.0.2', { + 'checksums': ['ac2915950789b16c43a625a2b8dab6ba423588db4a7d0daa75b74518b82b1403'], + }), + ('BiocFileCache', '2.4.0', { + 'checksums': ['5cefe2e72648c0003ac74937b390ebda7258b09eed575b84de1cb5dc23adabad'], + }), + ('biomaRt', '2.52.0', { + 'checksums': ['af23f7f9fe0fe9f7a38ea56d49671d62076ec7f8b1039054428cdeecad9ac37a'], + }), + ('GenomicFeatures', '1.48.3', { + 'checksums': ['815eaac9baf0ded8a5589fd9cf825f49f3ae802cb0769d2e301479a16ab82438'], + }), + ('bumphunter', '1.38.0', { + 'checksums': ['bc73783c84765a82f182ea17eb2cdaeea7631ed728eb7dd8aa5163c892be224d'], + }), + ('multtest', '2.52.0', { + 'checksums': ['02f5d868a59d849e7c9d528d7242843af2791312d36e5a5f9770f3307965fc0c'], + }), + ('scrime', '1.3.5', { + 'checksums': ['5d97d3e57d8eb30709340fe572746029fd139456d7a955421c4e3aa75d825578'], + }), + ('siggenes', '1.70.0', { + 'checksums': ['f4b454231928de76e85cd5582e69467de9c503b2e72610fa973b5cc444c5b22a'], + }), + ('DynDoc', '1.74.0', { + 'checksums': ['b1bfc7f8a519c4bd36a36bd22b16015900e3210ad3d8931be323d9401b6d117b'], + }), + ('NOISeq', '2.40.0', { + 'checksums': ['47cc6c13a1904f31f1b7ab206e438321208b6614d646ada72445900d6953062a'], + }), + ('Rgraphviz', '2.40.0', { + 'patches': ['Rgraphviz-2.28.0_fno-tree-vectorize.patch'], + 'checksums': [ + '94a4ce168efe39046fe10e2d75a9e459158716b4ef6ef977a0ced725f871cee4', # Rgraphviz_2.40.0.tar.gz + # Rgraphviz-2.28.0_fno-tree-vectorize.patch + '15783e9daba6f63c8e655858468a99e9f4f088468dbe3b414825e5844cf6b4a9', + ], + }), + ('RNASeqPower', '1.36.0', { + 'checksums': ['8d9ffdf045b56a69f2109503a733ab9bd55801a42ac6e52b4d7983f1e6ec692f'], + }), + ('annotate', '1.74.0', { + 'checksums': ['4fc0553435855aa7dbf352a26b86e39936d4510ae03816f708e7091e6f6bdb74'], + }), + ('GSEABase', '1.58.0', { + 'checksums': ['0f9d54c3be70854e349e150fcfd28585c67a1eacae5a2c204acd89349e7f1be2'], + }), + ('genefilter', '1.78.0', { + 'checksums': ['58913b670b29109a7226320e1f99d795931991db1939ea3fa25143492d55e3d2'], + }), + ('Category', '2.62.0', { + 'checksums': ['0def183b2707c0a1c2341ba104bfc6cc59df31dd2a92c0fffacfb4e6d8005a1e'], + }), + ('GOstats', '2.62.0', { + 'checksums': ['35cbed07bac0e1c67ea9d469d335d91de8b5c229c810568f472f2b1777f23488'], + }), + ('BSgenome', '1.64.0', { + 'checksums': ['ace392a9db183effb8a55c1f74719ef00dee5ea2da2af6f383af77e354cdf89d'], + }), + ('VariantAnnotation', '1.42.1', { + 'checksums': ['e1b5d52ce3f50c480ccda5340cf9f22774b124b9923caf95a0c6af6bfa84a589'], + }), + ('interactiveDisplayBase', '1.34.0', { + 'checksums': ['af2d2e7d806a349bf87b0eb969da661c160ce1ff0747375b5708320059e9bc39'], + }), + ('BiocVersion', '3.15.2', { + 'checksums': ['d67d6ecbdc89c9a69bc05a950edde3658411407c67804680981843a2beb74467'], + }), + ('AnnotationHub', '3.4.0', { + 'checksums': ['bacb8e2c4f14168087aa5c463902f3f910acf27d224c4ad2ee69eb3c485fb50d'], + }), + ('AnnotationFilter', '1.20.0', { + 'checksums': ['8d2ab20f253890fd7a560bf16be9e9cdd9d130e66232da6c9f56646f1abb5420'], + }), + ('ProtGenerics', '1.28.0', { + 'checksums': ['05e06c4ed777360f6e027568ff6e3ae6e5de97e07ce52454b87f3584897c0c12'], + }), + ('ensembldb', '2.20.2', { + 'checksums': ['ac1f2d701e9bf99265c8db18c7be7f30a60af6eaa68e31bff40fb61a590bc28a'], + }), + ('biovizBase', '1.44.0', { + 'checksums': ['cd7f83e8170d22ef45a3a832475edffcc131707aa882a2d046f410bafd71dfb9'], + }), + ('OrganismDbi', '1.38.1', { + 'checksums': ['2998649c56b5f7309dc3853ee9b1b1da05b8393eaea6f1f50d8241d291ecb657'], + }), + ('ggbio', '1.44.1', { + 'checksums': ['6f8ffb3507d81ffbc5f7c2e7d680a8dafc3a05453b02616fa35506cca992d047'], + }), + ('geneplotter', '1.74.0', { + 'checksums': ['4cc610c37d6c5fa2eeb6d61c52fa1cb322658216035c99dcb654e5967f05438c'], + }), + ('DESeq2', '1.36.0', { + 'checksums': ['2737cdbb39d393262af22c37aa7e8db72375ff04fb6aeeb849cf098b2558bb1a'], + }), + ('ReportingTools', '2.36.0', { + 'checksums': ['104e5363b8756259028b1aba15d3f3adce99fce8488e09e19b5d06e83e6e0c65'], + }), + ('Glimma', '2.6.0', { + 'checksums': ['df6f7fd11e6c0913a8527d367624dd2ad21feedd2feff0a68262c19d805727cc'], + }), + ('affycoretools', '1.68.1', { + 'checksums': ['9c0f1ab7e121e6655ce831f70b188ec006ff5fc204f3b8c649af5e593c24a617'], + }), + ('TxDb.Hsapiens.UCSC.hg19.knownGene', '3.2.2', { + 'checksums': ['063de2b1174782a0b2b8ab7f04a0bdf3c43252cb67c685a9f8ef2b8e318352e9'], + }), + ('Homo.sapiens', '1.3.1', { + 'checksums': ['014809fc6ef6410be8dc1094c9cb083719f20d999065ae4bf388855be0913b94'], + }), + ('BSgenome.Hsapiens.UCSC.hg19', '1.4.3', { + 'checksums': ['5bfa65d7836449d9b30c356968497cdfaa98be48c4e329e71e8f8a120f3e9d1a'], + }), + ('AgiMicroRna', '2.46.0', { + 'checksums': ['aa8b1482bae0a7a71f19191a9c0dba1411ac025ca93e47bf3c7bc1eb5f422c4a'], + }), + ('geneLenDataBase', '1.32.0', { + 'checksums': ['5f691667b53acb1769509540bdbdbf7001e5be4973b97a88f5567f8d47ab995c'], + }), + ('goseq', '1.48.0', { + 'checksums': ['88b45cf35e363e3c9b2edd6619d62be902ad97f40c835dfce9e2ee89e1e719f0'], + }), + ('KEGGgraph', '1.56.0', { + 'checksums': ['bdd9104ca0296d8f26d6719a2d9fdfaf9ed553b9b2f6d851c8103d760101f896'], + }), + ('GEOquery', '2.64.2', { + 'checksums': ['3dc51776c33d45371f8913d2593ea0babbbebd1aed018e220e037d0505de73b3'], + }), + ('rARPACK', '0.11-0', { + 'checksums': ['c33401e2e31d272d485ce2ed22e7fe43ac641fd7c0a45a9b848d3ad60df1028a'], + }), + ('mixOmics', '6.20.0', { + 'checksums': ['871f11604dd4e1923fc107a4c3df083ff41b8feb7332f765940bc8ec0e178c3b'], + }), + ('Rhdf5lib', '1.18.2', { + 'checksums': ['8f9893a4c8173f5d154e2a0b9f73f0f575ac17481a3bf943f99e88c30e44ebca'], + }), + ('rhdf5filters', '1.8.0', { + 'checksums': ['7ad7b5ae372c1a700976768e37ad227475c675bc15333d8cac317c6cd106efc6'], + }), + ('rhdf5', '2.40.0', { + 'checksums': ['ce4585ddf67848e3b34c531e02df7ee712874127dd54eaa21ce8a2652b489701'], + }), + ('HDF5Array', '1.24.1', { + 'checksums': ['5e35b79abd1115d98dda6551bf61a4adba50f723edfad91322eb6160e67934e4'], + }), + ('sparseMatrixStats', '1.8.0', { + 'checksums': ['a28fe0592793913b2c9c553bb15c71f741992ce88d27544475eb977bbc9a225c'], + }), + ('DelayedMatrixStats', '1.18.0', { + 'checksums': ['5b637538070ee949bad499390d140c0e8eac0d3f19655de71f5c64c092d99ce2'], + }), + ('minfi', '1.42.0', { + 'checksums': ['06e7596df31e8c01cd990f7f0dde3ef5e001cf58531ecb110f609658f8f9a508'], + }), + ('FDb.InfiniumMethylation.hg19', '2.2.0', { + 'checksums': ['605aa3643588a2f40a942fa760b92662060a0dfedb26b4e4cd6f1a78b703093f'], + }), + ('methylumi', '2.42.0', { + 'checksums': ['9c4bb87b4f581ebe142ca1bd42434f07248250da793ef4490bd2d152b08d934e'], + }), + ('lumi', '2.48.0', { + 'checksums': ['2d7964151fc7eab8cd4bea18b17f2d3c60f233a5302bbf46d5d5fb200ba5f51b'], + }), + ('widgetTools', '1.74.0', { + 'checksums': ['cd2027038e0cb97a63dd0e7d01d5c3425c3a722c24c80d6f5dd1a84f60d18183'], + }), + ('tkWidgets', '1.74.0', { + 'checksums': ['60124d00b1b0839b6a25befcaa76433ec9c4b867b0457219592335f43561f12c'], + }), + ('Mfuzz', '2.56.0', { + 'checksums': ['04426eed6a20834f793024370cc9120e54be586f7ab417227c0c8b3bf87de567'], + }), + ('venn', '1.11', { + 'checksums': ['33d915c7c90078f1e76e803fa3f02ab5b74dd04de7a9700477e51e0235f19314'], + }), + ('maSigPro', '1.68.0', { + 'checksums': ['2f81ff0150c613c3ebdd2eead744cbf4e5d5c68683be2213eba6b3d1254687d0'], + }), + ('SPIA', '2.48.0', { + 'checksums': ['fc246d7db41f6c34e6ca4d4f8fc63c20e79a171168e9e96283c8bf3e0ce9d5e8'], + }), + ('Gviz', '1.40.1', { + 'checksums': ['71af4c24a462438f73f010103ce49f10a2744e8d9839b56fc67805b161d7432b'], + }), + ('cummeRbund', '2.38.0', { + 'checksums': ['185478a9e3ed1b8c8bc9e475a8cf42720ef1ca79078c1cc19dfe9b4162b58adc'], + }), + ('GenomicFiles', '1.32.1', { + 'checksums': ['7fee384a18a2926acf53777ef011cbaefa65c87e975abdf7119d4e239475cc1b'], + }), + ('derfinderHelper', '1.30.0', { + 'checksums': ['e5527df3b13f13cbfee97af8f60019df8ef2394e0d7911b4640556b74a5fff64'], + }), + ('derfinder', '1.30.0', { + 'checksums': ['3b9f4aea71f556219d262b216dcd5d7d38f5b0d4c09de9b466baa269c477d9ff'], + }), + ('polyester', '1.32.0', { + 'checksums': ['fe7cee66c8bb7bd1eab3a26852c34742524478b2b762bc5806a07b83df5345d0'], + }), + ('Rsubread', '2.10.4', { + 'checksums': ['349fe4942612b7192d6de0b31b7e686d4a10e90934c67cf9d1163fb55e11b094'], + }), + ('pcaMethods', '1.88.0', { + 'checksums': ['2b41f13657f86c404851bc8164f748b755fb42f174b8fb4fa3ff80e30fd50781'], + }), + ('marray', '1.74.0', { + 'checksums': ['11d56753452ad1d9fd1829849dfcfe0de7b09b7a1d7619b8a75e8f3f15f88e2b'], + }), + ('CGHbase', '1.56.0', { + 'checksums': ['9971d4f559ad99604a43c664993360e3b42e5298afb9f5c4f6b63c9281f11ee1'], + }), + ('Wrench', '1.14.0', { + 'checksums': ['8afd0fa42accbd4058cf62a1edba2659047c49b911612d7441928753892ea6ff'], + }), + ('lpsymphony', '1.24.0', { + 'checksums': ['6f8c96972863d3c1ed8f55b937ceaf4e43832d59350d0231e2dfafa23502874d'], + }), + ('IHW', '1.24.0', { + 'checksums': ['aeea5a941d44a9b6c45e2bd7af5bcc40816b6565941282be09b09fdfcaf14ebf'], + }), + ('metagenomeSeq', '1.38.0', { + 'checksums': ['02cc936885c5835fb1a942face09618a4221d11e3c5f0741da00ff471a45106d'], + }), + ('gdsfmt', '1.32.0', { + 'checksums': ['000ff7bdfc325b8f37159d3bd3219fec95d2f92972ac2461e1de30f776f4bcb1'], + }), + ('SNPRelate', '1.30.1', { + 'checksums': ['998d11991c8d564932e25e947b164360c9aa9dffa87e533144a42ef00af96cc8'], + }), + ('biomformat', '1.24.0', { + 'checksums': ['3669661b489e5bb1b1e230cf6989e2c2d759714b62f4dab2a5f559d86f94988b'], + }), + ('phyloseq', '1.40.0', { + 'checksums': ['5378322e1c0b71a3d7d5703cc8c14df1c7844753ebb89d5825872b1f3fd99e41'], + }), + ('NADA', '1.6-1.1', { + 'checksums': ['670ff6595ba074ed0a930b7a09624d5ef20616379a20e768c1a7b37332aee44a'], + }), + ('zCompositions', '1.4.0-1', { + 'checksums': ['33ee11f635cb87cc9c0617e1cfc91f1ac41c6cfe2b70fc441e226015939230e7'], + }), + ('RcppZiggurat', '0.1.6', { + 'checksums': ['9c78255ca476c945c05a564d1e4da363de714d890e0e27f3b252fd73c50eed71'], + }), + ('Rfast', '2.0.6', { + 'checksums': ['34694b5c67ce8fcbdc90aac2ac80a74d4b66515f383e6301aea7c020009ebe7f'], + }), + ('ALDEx2', '1.28.1', { + 'checksums': ['492e774d4e72c86511028420eac13ec3cd49a210849c10e9257f51aa45e9f776'], + }), + ('dada2', '1.24.0', { + 'patches': ['dada2-1.16.0-remove-sse-on-aarch64.patch'], + 'checksums': [ + '9dd083928fc06d53cdb0a2e2d35be7c304fac74a300f8d3c3026022859b5725b', # dada2_1.24.0.tar.gz + # dada2-1.16.0-remove-sse-on-aarch64.patch + 'ec840afde51428f6f2d1a480b7f0da16660c1d7a234699fa5e23fd6e66888935', + ], + }), + ('LEA', '3.8.0', { + 'patches': ['LEA-3.0.0_support_aarch64_and_ppc64le.patch'], + 'checksums': [ + 'c0fd5b5a66aff94d65b8961409c226966aa96a02eb7d1e9a9e75382226e5b774', # LEA_3.8.0.tar.gz + # LEA-3.0.0_support_aarch64_and_ppc64le.patch + 'caeaae7aa0577540bc9c03b54ce5a0fe4ff1a28ac503106e2b3acd1b9db82881', + ], + }), + ('tximport', '1.24.0', { + 'checksums': ['1db129f369b37e5ebaefa85b724b1e640fa50c8317f009834ae7f37d0552d9b2'], + }), + ('SingleCellExperiment', '1.18.0', { + 'checksums': ['f76ccbb90d2cf14edca37f34815b3242e25eb18dd749eedd97f15b47f7c22a68'], + }), + ('beachmat', '2.12.0', { + 'checksums': ['0c292f7368fb6a7d0809f332a02576d6c6cdf3b86ae22fa493ae062ce5de8639'], + }), + ('RcppAnnoy', '0.0.19', { + 'checksums': ['89b209900516f3096b53c90937081fb8965c605c867aa465f1b3b68092b7688a'], + }), + ('RcppHNSW', '0.3.0', { + 'checksums': ['a0eb4eea65e28ba31e8306a1856f7e617a192bd448b148f88abe99181cbde007'], + }), + ('BiocNeighbors', '1.14.0', { + 'checksums': ['bda4dfa69b93b21a4d6949e2ebaa4265d467b253130e7192c271f7cbea8783a8'], + }), + ('rsvd', '1.0.5', { + 'checksums': ['e40686b869acd4f71fdb1e8e7a6c64cd6792fc9d52a78f9e559a7176ab84e21e'], + }), + ('ScaledMatrix', '1.4.0', { + 'checksums': ['949533de2730ae04794dc386e08e08f46a95471e1f32272fbcf01cbb6a31c05c'], + }), + ('BiocSingular', '1.12.0', { + 'checksums': ['7dd45d85c0c8248406caab4accb74b483d0066443e443b51bc5049602df32aeb'], + }), + ('scuttle', '1.6.2', { + 'checksums': ['f64fe1c7478b45d062656cfd2ecad3341abb1b1d9eb0ac0857dd0ce2f8c0d55a'], + }), + ('RcppML', '0.3.7', { + 'checksums': ['325c6515085527eb9123cc5e87e028547065771ed4d623048f41886ae28908c6'], + }), + ('scater', '1.24.0', { + 'checksums': ['3c9718fd782a69159d4361f497fea417478682f200274b09b6c5d7c3dfcb1137'], + }), + ('sitmo', '2.0.2', { + 'checksums': ['448ef8d56e36783354011845daf33f1efb83ea3b9685eea75eaf5134e24fa8c2'], + }), + ('dqrng', '0.3.0', { + 'checksums': ['4beeabfe245ce7196b07369f2a7d277cb08869ad8b45a22c6354c4cc70a39abb'], + }), + ('bluster', '1.6.0', { + 'checksums': ['681356e8ff7f8be93115a733f18b8a66a4ae8e841d59908d831ab67a983789bc'], + }), + ('metapod', '1.4.0', { + 'checksums': ['ebe8d6ce014448fe43b21cb5525339be95457931246a104ec6983caa1060e9a5'], + }), + ('scran', '1.24.0', { + 'checksums': ['1c997e6c653e74bc99a4b249ead5490e47523553adcf5f6f31aa8454066de775'], + }), + ('SC3', '1.24.0', { + 'checksums': ['e253051097403d8c5cadad27193cfc35e402efe943ed3132c4ce95fc53073d9d'], + }), + ('ComplexHeatmap', '2.12.0', { + 'checksums': ['c5e8e76184e7bf91b1b1ee36d48dd0b03ff08d019c567038cb37213ae94e6495'], + }), + ('GENIE3', '1.18.0', { + 'checksums': ['54ccf0e155f8160b5903a9bbfa77d05be32a9a65e472f7906a392dfbedb57b40'], + }), + ('dupRadar', '1.26.1', { + 'checksums': ['b63bd2946ce00e4ce1104c691dea8b8bc7407c9879491ba4e0a8d105ebb3ce51'], + }), + ('DNAcopy', '1.70.0', { + 'checksums': ['8cc7c37dd99dc90d0543ae24e7662aa10a52788a6b54fdaccb04d165d1257081'], + }), + ('sva', '3.44.0', { + 'checksums': ['441d2096740bd7acceedd5704b104c077adf0226821f49b584405160732a424d'], + }), + ('ballgown', '2.28.0', { + 'checksums': ['089c8fcc1650fd4872ac5eaeb3dfbfd498d8cb977f46264bd4b54f5dbd1b1851'], + }), + ('DropletUtils', '1.16.0', { + 'checksums': ['9cb38acd4097f448dd39ead182f6cf36a9b83e124245e7e21d4681d323f408ff'], + }), + ('DeconRNASeq', '1.38.0', { + 'checksums': ['661e11800fc7ce9706e735b18e0a16e0176a9a6b133a102944a5f6ac119a5583'], + }), + ('GSVA', '1.44.2', { + 'checksums': ['580b70cd77d2a38ffda3bba6f78e44f5d27f6ed09b5297a3eed8fd81a1090260'], + }), + ('PureCN', '2.2.0', { + 'checksums': ['db490d56e6f69c15e3d9967a1e9eecf2647bf029b60b6e032d0a6a297a52a6e5'], + }), + ('globaltest', '5.50.0', { + 'checksums': ['452736d1d75be95b5781888eaf0d0fc0809e9539bb0f74882f111c9a6a4fb055'], + }), + ('GlobalAncova', '4.14.0', { + 'checksums': ['641b24765da7bdbc5fa76c9a3edd19e37274c1e99dc4714e432e3a06e8048507'], + }), + ('vsn', '3.64.0', { + 'checksums': ['0ebf308a53caf996c5cb93685cddef071bb68975df25770a0dc7f4b765db47c9'], + }), + ('mzID', '1.34.0', { + 'checksums': ['c1245fd0cb5cd23601794520b9786e37f63887532d8f7a3449a4d9a4bcc72ae0'], + }), + ('mzR', '2.30.0', { + 'checksums': ['ba318b62d3a5d1297f25360eca1e29f926e7679351cf129ec36b0ab2e0000ab7'], + }), + ('MsCoreUtils', '1.8.0', { + 'checksums': ['f0f7d14b2d8560043a06dcad0c957d4c2070922cc7caa7ea54a81fe1d90ffd1c'], + }), + ('MSnbase', '2.22.0', { + 'checksums': ['a38f0232b8aa8b1713cf5f9071447a3a00c1866f0d82b49f61c672c1c604f6f7'], + }), + ('MassSpecWavelet', '1.62.0', { + 'checksums': ['69b44651c7b7862523617d8f9b4700652af01b5485e0e574fd011e377cfb313d'], + }), + ('MsFeatures', '1.4.0', { + 'checksums': ['037b64dada359ed60c4c5ad474c20560251ba13e827c24c9ba250c4c30c33184'], + }), + ('xcms', '3.18.0', { + 'checksums': ['b58763f7c1520c7b02702cc371a2a0df3419a5deae3d223cc24552248e685f5c'], + }), + ('CAMERA', '1.52.0', { + 'checksums': ['257b25b53fe9e73b6b6d1a366ca0a9160d307527eecd2fbf47c1a1872a88e84b'], + }), + ('fgsea', '1.22.0', { + 'checksums': ['ef56433dfff96c1ab20737d6af954c1c6f5158fb74654ce875849aa8def3d646'], + }), + ('GWASExactHW', '1.01', { + 'checksums': ['e850ed40fbf14b02eb3798603cfb111fe3718bb69d74c0ff4cb6f679209a15a7'], + }), + ('quantsmooth', '1.62.0', { + 'checksums': ['3a2bf8786a52c3709c2b5baf006f77365acd806cc2383005b24d471a43a8ea08'], + }), + ('GWASTools', '1.42.0', { + 'checksums': ['9fc08c28ece2f22ba9b834645f0c2e6bc0105a869f08338012c717a9ae620f58'], + }), + ('SeqArray', '1.36.2', { + 'checksums': ['17ca83fdae5175b7f0631f95598602c5f8209ed285899d2b47b13bfae11c9312'], + }), + ('SeqVarTools', '1.34.0', { + 'checksums': ['6a2c3275c4adc0d6fab912b5d00747456fd80c2c8063172ac6de250cde5c2abe'], + }), + ('GENESIS', '2.26.0', { + 'checksums': ['2c517d2e008cd2d4fbb5b19c7ed0e58b33b5fb3a8fa7aec108dd6f9aa4e9c3e2'], + }), + ('MLInterfaces', '1.76.0', { + 'checksums': ['453f7b0aa2a91f5e3815b9ae37fe3e0dff1dfa19a3840f089bee46d9670a2d9d'], + }), + ('pRoloc', '1.36.0', { + 'checksums': ['ffba6a8083ffd1153c6880f3e5f6522a96f5f1c578d29f68f9691bc059b7df86'], + }), + ('pRolocdata', '1.34.0', { + 'checksums': ['10030fafa36d8ab321e98341b471e4f08072974797074bf69d2faa54bddd33ac'], + }), + ('fresh', '0.2.0', { + 'checksums': ['a92db254ae88e8371efac44efe2cf1f5be7cce62291fdf994ebd68c14dad079d'], + }), + ('waiter', '0.2.5', { + 'checksums': ['9ac25e979db9242598bd0492ff862360009b51ce672184ec9f4eeb2232164979'], + }), + ('shinydashboardPlus', '2.0.3', { + 'checksums': ['49a88cfa396f880ff4faf558bb038763084287c932e27b0c9251f4d676584d83'], + }), + ('shinyhelper', '0.3.2', { + 'checksums': ['f7ed62543ab4d05a34b69a9183517a09e93e1b2da85b113282de0f9982db90b0'], + }), + ('shinyWidgets', '0.7.0', { + 'checksums': ['d4cb8ab7a96861a819128f9deeb293e8178f90fcd51f0e84467161ca7cd36711'], + }), + ('pRolocGUI', '2.6.0', { + 'checksums': ['b097d2c35429c5612b789af3438f9a83926659ffc0e019ef7b32d017fcb48848'], + }), + ('EBImage', '4.38.0', { + 'checksums': ['510381699581592915aa5e73271f99b8ca73fe2a92fb96b86a699ac157219ded'], + }), + ('GenomicScores', '2.8.2', { + 'checksums': ['f2a4823ad57d47528044a05ac16b3c84868334f21d95ac0e2e2d58950cef2c8b'], + }), + ('BSgenome.Mmusculus.UCSC.mm10', '1.4.3', { + 'checksums': ['dcf602bf9fadf1ef4ce70e0c0fc92b6435467df5affe7d0872d88a93b99ff9ee'], + }), + ('TxDb.Mmusculus.UCSC.mm10.knownGene', '3.10.0', { + 'checksums': ['696281749d01737c94894564d62093433045bc007a4528cc3d94f205edb54977'], + }), + ('regioneR', '1.28.0', { + 'checksums': ['6ea89b61959317a16a16a16f589df0996eb55123814a7674fab18720b6889087'], + }), + ('InteractionSet', '1.24.0', { + 'checksums': ['a56a76d729d30824b533e01692f0badfce6abe708b568870d4a86e5944af5162'], + }), + ('ChIPpeakAnno', '3.30.1', { + 'checksums': ['1ed141ec6994a7a548e7dcd41de3bfd54352cb7e85b42dab77ecb3de287d4628'], + }), + ('seqLogo', '1.62.0', { + 'checksums': ['b9f3c5038c8ca343f25a938ccd87a90ef1ee99be4bca474dab4c9d50d11063d2'], + }), + ('rGADEM', '2.44.0', { + 'checksums': ['e4d928382ff48651860057cbf66e30c9670c4ee97322d761b2c00e063e6f7d04'], + }), + ('MotifDb', '1.38.0', { + 'checksums': ['7165a40692d2c906cfbe6513e5e2759ff6efd3e00547d5e288b16d0f28f8ceb3'], + }), + ('poweRlaw', '0.70.6', { + 'checksums': ['efc091449c5c6494c1c13c85a8eb95625d1c55ffffebe86c7ea16e4abbafa191'], + }), + ('CNEr', '1.32.0', { + 'checksums': ['780a43bba1307625b1bf395c20a22002b7338ea3796f2e20eef95ab45dc9fb17'], + }), + ('DirichletMultinomial', '1.38.0', { + 'checksums': ['bdae3433f4fcf27f8aae91f7ee5f14c4b6f6263d7ba89d4bcd9502f4b1808096'], + }), + ('TFMPvalue', '0.0.8', { + 'checksums': ['6d052529f7b59d0384edc097f724f70468013777b6adf4c63e61a359029d3841'], + }), + ('TFBSTools', '1.34.0', { + 'checksums': ['3c899efd9c44cb9398ecff7a6fb40fa8fd2dc9b4deaf8fd3684e9ece440ed250'], + }), + ('motifStack', '1.40.0', { + 'checksums': ['1fe01cd6ae2e700f35d21c937976cbf48a331626c086e4cc5e9f41364e875134'], + }), + ('ATACseqQC', '1.20.2', { + 'checksums': ['17cf6c17610c287a187010f30b880ae57e5e9f9ef42b3d018fec01c92ab0474a'], + }), + ('ResidualMatrix', '1.6.0', { + 'checksums': ['445b280e890d70303200a48599211c25841c03b564928cdf15924ba0f61b59de'], + }), + ('batchelor', '1.12.3', { + 'checksums': ['ac4bd7758ddf758ec599873c6ac698721ca11417db7a8b87799daa07371c3d02'], + }), + ('gsmoothr', '0.1.7', { + 'checksums': ['b75ffd2a4a0f357762e02e46e355b45cc90ea637830f0a1b01f216bb4541e903'], + }), + ('Ringo', '1.60.0', { + 'checksums': ['ec7e0b3897400f8137b33d01d3f8c0842991c1ac273ea17ea9518617eeefd5fe'], + }), + ('R.devices', '2.17.1', { + 'checksums': ['3b7e57039311c034ff87ccebef4f16410d59985693c47949ecefa49a166c9c09'], + }), + ('R.filesets', '2.14.0', { + 'checksums': ['707dd7c099aeadbecebbd2ba57e6400405aa44487c641f3729ce06c4c642bb23'], + }), + ('aroma.light', '3.26.0', { + 'checksums': ['da6fd263bcf8a66b8b6f09bc16a1360fc5c92c4c415794d22b4038bd79da8088'], + }), + ('PSCBS', '0.66.0', { + 'checksums': ['58805636e55e0fd3f57bd4a0e296a8bb3d57a7bdd0fdd5868a73ddc83d173a93'], + }), + ('aroma.core', '3.2.2', { + 'checksums': ['35e0312e403a1894da036afac12d1d727c937e666d7eb400bfe4018b21244855'], + }), + ('R.huge', '0.9.0', { + 'checksums': ['f12d113a965603cfdbbb46e1a57331d267916235555b22f2bbc06caa302ae58e'], + }), + ('aroma.apd', '0.6.0', { + 'checksums': ['87513774baeed8e1d43f819e615c85278aef748ebc842f1ee50686c3392e37d1'], + }), + ('aroma.affymetrix', '3.2.0', { + 'checksums': ['d279cf13cf6ed8369cfdf6682ace12924379bad578003453449aa1ccec31b0a7'], + }), + ('Repitools', '1.42.0', { + 'checksums': ['48a60c930cae9343b0820c88e274c6c5c473fc73075ef966ff272a3e70f35ac9'], + }), + ('BSgenome.Hsapiens.UCSC.hg38', '1.4.4', { + 'checksums': ['024e3571b70f8e07bd50c4dd4d2dc05288497bf5409a9ac4ef12db94b081b50f'], + }), + ('MEDIPS', '1.48.0', { + 'checksums': ['a025c9f0c5846ecd9e16ba3945c6522080272789c46ebaffb1cb422c8f12afe3'], + }), + ('RProtoBufLib', '2.8.0', { + 'patches': ['RProtoBufLib-2.8.0_fix-protobuf-build.patch'], + 'checksums': [ + 'f7160c1623f50f0e23d14e7e99a2e6c018186871f7f1f68c9171031f6ae678d7', # RProtoBufLib_2.8.0.tar.gz + # RProtoBufLib-2.8.0_fix-protobuf-build.patch + '8775d74e2288000c57575f4ef45a875b4a377ac02f89efa947699ea786bedf64', + ], + }), + ('cytolib', '2.8.0', { + 'checksums': ['cf4b6d2f32610c14c967ac791ea762e187776ace978c6135a2453116b51865a1'], + }), + ('flowCore', '2.8.0', { + 'checksums': ['19ce4ffbf70bd3b5a68b045f0c4a21f85c0586ff0817be22d01b44c2b289cc9e'], + }), + ('mutoss', '0.1-12', { + 'checksums': ['2889ae3d502157592697124eb86adc14911e2b7fdaa7204743a376b1eeb967fa'], + }), + ('qqconf', '1.2.3', { + 'checksums': ['9b5b6042ea8e52e6e049807c0b5e3bfd534b624bd257be769de69cf505fece62'], + }), + ('metap', '1.8', { + 'checksums': ['ee9501a8de8a4c47af1632e6053e42ef53fc4b8bdf0f2759edc4d3eefaf5552b'], + }), + ('uwot', '0.1.11', { + 'checksums': ['4fcf90f1369a2a1f01db9e05a2365b155b2ada8e51e1f7f3ba5122d86affd41b'], + }), + ('scattermore', '0.8', { + 'checksums': ['dbdd73d8261cb063464bb29d5c17733b7e87bc50a19948bc80439e19f2a9f8e5'], + }), + ('SeuratObject', '4.1.0', { + 'checksums': ['9ca406cb3bd95c588e1a81c5383e3173a446cc0667142b139ca32685b4b20a05'], + }), + ('Seurat', '4.1.1', { + 'checksums': ['201aa96919b32378fc4cb67557188214c1242dcbae50cadd7d12c86666af8ace'], + }), + ('ALL', '1.38.0', { + 'checksums': ['1fdce1f158f0c8c68ab9c86e0464ec9e70a8a3470d6a3da7abfc88d10b012010'], + }), + ('ConsensusClusterPlus', '1.60.0', { + 'checksums': ['f7809db4eef81367be8b92b327e64dfd373e689893f0a99dd238e54a7a644180'], + }), + ('flowViz', '1.60.2', { + 'checksums': ['2531766d40373f44794cb64d8d7ac993e97e1730ae62ac25e7405b6904fb3c23'], + }), + ('ncdfFlow', '2.42.1', { + 'checksums': ['67ef4d897a1a497d6c822bcb924169800773d1bcfb5d5e305cb60971e7eea91c'], + }), + ('aws.signature', '0.6.0', { + 'checksums': ['f7fe4f686979be21e5a8ba7ae11f0fade4f5aaf4e98063b5349ee0962dbb9496'], + }), + ('aws.s3', '0.3.21', { + 'checksums': ['bd21054ab63555d294e7465dcb6c86f107db52ba841aeac5bdf4d00af0674c8c'], + }), + ('flowWorkspace', '4.8.0', { + 'checksums': ['5a6305edbe8da4651bfa8d4d866411b097833d12ad55687a91a133244c8a3e66'], + }), + ('ash', '1.0-15', { + 'checksums': ['8b0a7bc39dd0ce2172f09edc5b5e029347d041a4d508bbff3f3fd6f69450c2ab'], + }), + ('hdrcde', '3.4', { + 'checksums': ['4341c6a021da46dcae3b1ef6d580e84dcf625c2b2139f537d0c26ec90899149b'], + }), + ('rainbow', '3.6', { + 'checksums': ['63d1246f88a498f3db0321b46a552163631b288a25b24400935db41326636e87'], + }), + ('fds', '1.8', { + 'checksums': ['203a5e7671e542dcb83d4c75d0f4012aaebc32d54f94657afaf9e71e99dd0489'], + }), + ('fda', '6.0.5', { + 'checksums': ['14445776fc65284cd6cae98e5b4dd14c2626d96db5f78c0fcc6aabce5419b8f1'], + }), + ('flowStats', '4.8.0', { + 'checksums': ['9243df5cb48531a08137d9789f5e7a797c4cf60102ccb14fb397560195486cc9'], + }), + ('flowClust', '3.34.0', { + 'installopts': "--configure-args='--with-gsl=${EBROOTGSL} --enable-bundled-gsl=false'", + 'checksums': ['93aeb50d3fd5c3fa3c9951496e639e0bf17cff8d13cb0bed1749418574aabb14'], + }), + ('openCyto', '2.8.2', { + 'checksums': ['a3de6596f03536e70aeb3f800861fdb53f4f6514c9d36499061aed94016d883d'], + }), + ('ggcyto', '1.24.1', { + 'checksums': ['450c300a9c7c2cd2d02763fa35ae73aaf16fbeef7ab45ed6abf2e38d4e0786b3'], + }), + ('CytoML', '2.8.0', { + 'checksums': ['399f4daacc8b69adc47f9a804041af443d28b5f2ea5f094d2aa805e87653e76e'], + }), + ('colorRamps', '2.3.1', { + 'checksums': ['61f1290824380ae2fe4649f296649e0a155b73ced41479686150400f8a9c568a'], + }), + ('ggnewscale', '0.4.7', { + 'checksums': ['6b12ac9947fd3161941b2bb85c00a18d5fc794ad8b1e22a6f37f63ac8d3f0a81'], + }), + ('ggpointdensity', '0.1.0', { + 'checksums': ['3ea646cf183c8bf7869b122a4ee972b53709056ff443ea71551b823524092a31'], + }), + ('FlowSOM', '2.4.0', { + 'checksums': ['8518c515dfefcf9ba970a6e99815cc2af9809b1d5bb6aa300b28d55a74d3542d'], + }), + ('HMMcopy', '1.38.0', { + 'checksums': ['7d30c261c3c9299c0dcd1f31488a5adb8191ad13b4267aaea0db77ddb920eb42'], + }), + ('diffcyt', '1.16.0', { + 'checksums': ['abe58173f953fd273e93dbc851e0735357fce9f4c4aa1e2a3d8f88573ff5da57'], + }), + ('blme', '1.0-5', { + 'checksums': ['679a4f19d34a584c2390ffab37810a31f6834b913fceaa2409d297ccdf912310'], + }), + ('variancePartition', '1.26.0', { + 'checksums': ['9b9fe9790c06ecb7c945685b8956e20d9f5b772745c3f471f6fd818528ee6172'], + }), + ('muscat', '1.10.1', { + 'checksums': ['cd3ddcd139a08b5bae9912b0848dcab8692e6550d187357ddb22a9ff309c7fc8'], + }), + ('IlluminaHumanMethylation450kmanifest', '0.4.0', { + 'checksums': ['41b2e54bac3feafc7646fe40bce3aa2b92c10871b0a13657c5736517792fa763'], + }), + ('IlluminaHumanMethylationEPICmanifest', '0.3.0', { + 'checksums': ['e39a69d98486cec981e97c56f45bbe47d2ccb5bbb66a1b16fa0685575493902a'], + }), + ('IlluminaHumanMethylation450kanno.ilmn12.hg19', '0.6.1', { + 'checksums': ['3627d75a6303f4d307fa6daf0c5afd57649c60a268b3d4be7e8ac8edc4b1e288'], + }), + ('IlluminaHumanMethylationEPICanno.ilm10b2.hg19', '0.6.0', { + 'checksums': ['4decdbc78a6a8d02bf8aecb0d6e1d81134ae9dbc2375add52574f07829e8cd69'], + }), + ('IlluminaHumanMethylationEPICanno.ilm10b4.hg19', '0.6.0', { + 'checksums': ['2c8128126b63e7fa805a5f3b02449367dca9c3be3eb5f6300acc718826590719'], + }), + ('conumee', '1.30.0', { + 'checksums': ['c80828acdc1855186d6c85cd15c84871a344e2060a43cdf974ad4ffdf736efdf'], + }), + ('BSgenome.Cfamiliaris.UCSC.canFam3', '1.4.0', { + 'checksums': ['99c55b6f7808822a3dae6679e60ecfb88a2b618159484bc35303c000bd4820c7'], + }), + ('ExperimentHub', '2.4.0', { + 'checksums': ['74d2b33433436f0c01e1a5c42538044d130439d84df07be60f5f859a37521686'], + }), + ('SingleR', '1.10.0', { + 'checksums': ['beb04226eb673fc592df7dcf7bd4e5301aaebb1af1a090221dbb0bfebc617e61'], + }), + ('FlowSorted.Blood.EPIC', '2.0.0', { + 'checksums': ['44323f350cec601eb73c3235571b02b18e4f0e9633c9f8ab88377fe9f28a17f3'], + }), + ('FlowSorted.CordBloodCombined.450k', '1.12.0', { + 'checksums': ['9b12170568c3ba8c7f71c339d9c43d020e0c36c21f59851fcef98c78cf0bc0dd'], + }), + ('DRIMSeq', '1.24.0', { + 'checksums': ['94a4fd7143ff3015ebb830445de6517394cb9fb976b5f201f76a10190722f0b6'], + }), + ('stageR', '1.18.0', { + 'checksums': ['3e7141d1b02c44b124a3b6d981b1cdf0389c1af1b1b00c758e4659420d8c435b'], + }), + ('isva', '1.9', { + 'checksums': ['9fd016e0b34034d271d45f8a0d0db62780bf0187112e45f610aa9237014e1d17'], + }), + ('org.Mm.eg.db', '3.15.0', { + 'checksums': ['c658df080feb03fedfcbb5f772f3683ff7272b2de3deee055292005b3093d78a'], + }), + ('org.Rn.eg.db', '3.15.0', { + 'checksums': ['e09eb3e6a7d8c73ba3de018d8e9715b353ad5f5dfd8a488d67e016d115dea47b'], + }), + ('ROC', '1.72.0', { + 'checksums': ['62077c63539636fbf21ad5630aafe369d789c8355050a3a56df82f214103d879'], + }), + ('wateRmelon', '2.2.0', { + 'checksums': 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