-
Notifications
You must be signed in to change notification settings - Fork 3
/
Copy pathparameters_muller2016.py
207 lines (187 loc) · 9.75 KB
/
parameters_muller2016.py
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
parameters = {
'plate_motion_model' : 'muller2016',
'rotation_files' : '../Muller_2016/muller2016/Global_EarthByte_230-0Ma_GK07_AREPS.rot',
'topology_files' : ['../Muller_2016/muller2016/Global_EarthByte_230-0Ma_GK07_AREPS_PlateBoundaries.gpml',
'../Muller_2016/muller2016/Global_EarthByte_230-0Ma_GK07_AREPS_Topology_BuildingBlocks.gpml'],
'coastlines_file' : '../Muller_2016/muller2016/Global_EarthByte_230-0Ma_GK07_AREPS_Coastlines.gpml',
'cob_file' : '../Muller_2016/muller2016/Global_EarthByte_230-0Ma_GK07_AREPS_IsoCOB.gpml',
'static_polygons_file' : '../Muller_2016/muller2016/Global_EarthByte_GPlates_PresentDay_StaticPlatePolygons_2015_v1.gpml',
'terranes_file' : '../Muller_2016/muller2016/Global_EarthByte_230-0Ma_GK07_AREPS_COB_Terranes_polygon.gpml',
# a list of grid files from which the coregistration scripts query data
'grid_files' : [
['../Muller_2016/carbonatethick/compacted_sediment_thickness_0.1_{time:d}.nc', 'carbonate_sediment_thickness_m'],
['../Muller_2016/carbonper/co2_percent_{time:d}.nc', 'ocean_crust_carb_percent'],
['../Muller_2016/agegrid/Muller_etal_2016_AREPS_v1.17_AgeGrid-{time:d}.nc', 'seafloor_age_ma'],
['../Muller_2016/spreadrate_old/rategrid_{time:d}.nc', 'seafloor_spread_rate_mm_yr'],
['../Muller_2016/sedthick/sed_thick_0.1d_{time:d}.nc', 'total_sediment_thick_m']
],
'agegrid_dir': '../Muller_2016/agegrid/',
'convergence_data_dir' : './kinematic_features_muller2016/',
'convergence_data_filename_prefix' : 'features',
'convergence_data_filename_ext' : 'csv',
# folder contains the coregistration input files
'coreg_input_dir' : './coreg_input_muller2016/',
# the file which contains the seed points
# coregistration input file
'coreg_input_files' : ['mineral_occurrences.csv', 'random_samples.csv', 'target_points', 'target_points_ng'],
# folder contains the coregistration output files
'coreg_output_dir' : './coreg_output_muller2016/',
# folder contains the machine learning input files
'ml_input_dir' : './ml_input_muller2016/',
'augmentation_dir' : './augmentation/',
# folder contains the machine learning output files
'ml_output_dir' : './ml_output_muller2016/',
'min_occ_prob_dir' : './min_occ_prob_muller2016/',
'selected_features' : [
'arc_len_deg',
'conv_angle_deg',
'conv_ortho_cm_yr',
'conv_paral_cm_yr',
'conv_rate_cm_yr',
'dist_nearest_edge_deg',
'distance_deg',
'trench_abs_angle_deg',
'trench_abs_ortho_cm_yr',
'trench_abs_paral_cm_yr',
'trench_abs_rate_cm_yr',
'subducting_abs_angle_deg',
'subducting_abs_ortho_cm_yr',
'subducting_abs_paral_cm_yr',
'subducting_abs_rate_cm_yr',
'carbonate_sediment_thickness_m',
'ocean_crust_carb_percent',
'seafloor_age_ma',
'seafloor_spread_rate_mm_yr',
'subduction_volume_km3_yr',
'total_sediment_thick_m'
],
'selected_features_names' : [
'Length of the arc segment (deg)',
'Relative motion vector (obliquity angle, deg)',
'Relative motion vector (orthogonal, cm/yr)',
'Relative motion vector (parallel, cm/yr)',
'Relative motion vector (magnitude, cm/yr)',
'Distance to the nearest trench edge (deg)',
'Distance to the nearest trench point (deg)',
'Overriding absolute plate velocity (obliquity angle, deg)',
'Overriding absolute plate velocity (orthogonal, cm/yr)',
'Overriding absolute plate velocity (parallel, cm/yr)',
'Overriding absolute plate velocity (magnitude, cm/yr)',
'Downgoing absolute plate velocity (obliquity angle, deg)',
'Downgoing absolute plate velocity (orthogonal, cm/yr)',
'Downgoing absolute plate velocity (parallel, cm/yr)',
'Downgoing absolute plate velocity (magnitude, cm/yr)',
'Deep-sea carbonate sediment thickness (m)',
'Upper ocean crust carbonate concentration (%)',
'Seafloor age (Ma)',
'Seafloor spreading rate (mm/yr)',
'Subducting plate volume (km^3/yr)',
'Total deep-sea sediment thickness (m)'
],
'selected_features_names_fig_01' : [
'Length of the arc segment (deg)',
'Relative motion vector\n(obliquity angle, deg)',
'Relative motion vector\n(orthogonal, cm/yr)',
'Relative motion vector\n(parallel, cm/yr)',
'Relative motion vector\n(magnitude, cm/yr)',
'Distance to the nearest\ntrench edge (deg)',
'Distance to the nearest\ntrench point (deg)',
'Overriding absolute plate velocity\n(obliquity angle, deg)',
'Overriding absolute plate velocity\n(orthogonal, cm/yr)',
'Overriding absolute plate velocity\n(parallel, cm/yr)',
'Overriding absolute plate velocity\n(magnitude, cm/yr)',
'Downgoing absolute plate velocity\n(obliquity angle, deg)',
'Downgoing absolute plate velocity\n(orthogonal, cm/yr)',
'Downgoing absolute plate velocity\n(parallel, cm/yr)',
'Downgoing absolute plate velocity\n(magnitude, cm/yr)',
'Deep-sea carbonate\nsediment thickness (m)',
'Upper ocean crust carbonate\nconcentration (%)',
'Seafloor age on\ntrench lines (Ma)',
'Seafloor spreading rate (mm/yr)',
'Subducting plate volume\n(km\u00b3/yr)',
'Total deep-sea sediment\nthickness (m)'
],
'selected_features_names_fig_02' : [
'Length of the arc segment (deg)',
'Obliquity angle of the relative motion vector (deg)',
'Orthogonal component of the relative motion vector (cm/yr)',
'Parallel component of the relative motion vector (cm/yr)',
'Magnitude of the relative motion vector (cm/yr)',
'Distance to the nearest trench edge (deg)',
'Distance to the nearest trench point (deg)',
'Obliquity angle of the overriding absolute plate velocity (deg)',
'Orthogonal component of the overriding absolute plate velocity (cm/yr)',
'Parallel component of the overriding absolute plate velocity (cm/yr)',
'Magnitude of the overriding absolute plate velocity (cm/yr)',
'Obliquity angle of the downgoing absolute plate velocity (deg)',
'Orthogonal component of the downgoing absolute plate velocity (cm/yr)',
'Parallel component of the downgoing absolute plate velocity (cm/yr)',
'Magnitude of the downgoing absolute plate velocity (cm/yr)',
'Deep-sea carbonate sediment thickness (m)',
'Upper ocean crust carbonate concentration (%)',
'Seafloor age (Ma)',
'Seafloor spreading rate (mm/yr)',
'Subducting plate volume (km\u00b3/yr)',
'Total deep-sea sediment thickness (m)'
],
'selected_features_names_nounit_01' : [
'Length of the arc segment',
'Relative motion vector (obliquity angle)',
'Relative motion vector (orthogonal)',
'Relative motion vector (parallel)',
'Relative motion vector (magnitude)',
'Distance to the nearest trench edge',
'Distance to the nearest trench point',
'Overriding absolute plate velocity (obliquity angle)',
'Overriding absolute plate velocity (orthogonal)',
'Overriding absolute plate velocity (parallel)',
'Overriding absolute plate velocity (magnitude)',
'Downgoing absolute plate velocity (obliquity angle)',
'Downgoing absolute plate velocity (orthogonal)',
'Downgoing absolute plate velocity (parallel)',
'Downgoing absolute plate velocity (magnitude)',
'Deep-sea carbonate sediment thickness',
'Upper ocean crust carbonate concentration',
'Seafloor age',
'Seafloor spreading rate',
'Subducting plate volume',
'Total deep-sea sediment thickness'
],
'selected_features_names_nounit_02' : [
'Length of the arc segment',
'Obliquity angle of the relative motion vector',
'Orthogonal component of the relative motion vector',
'Parallel component of the relative motion vector',
'Magnitude of the relative motion vector',
'Distance to the nearest trench edge',
'Distance to the nearest trench point',
'Obliquity angle of the overriding absolute plate velocity',
'Orthogonal component of the overriding absolute plate velocity',
'Parallel component of the overriding absolute plate velocity',
'Magnitude of the overriding absolute plate velocity',
'Obliquity angle of the downgoing absolute plate velocity',
'Orthogonal component of the downgoing absolute plate velocity',
'Parallel component of the downgoing absolute plate velocity',
'Magnitude of the downgoing absolute plate velocity',
'Deep-sea carbonate sediment thickness',
'Upper ocean crust carbonate concentration',
'Seafloor age',
'Seafloor spreading rate',
'Subducting plate volume',
'Total deep-sea sediment thickness'
],
# the following parameters are used by subduction_convergence
# see https://github.com/EarthByte/PlateTectonicTools/blob/master/ptt/subduction_convergence.py
'threshold_sampling_distance_degrees' : 0.1,
'anchor_plate_id' : 0, # see https://www.gplates.org/user-manual/MoreReconstructions.html
'velocity_delta_time' : 1,
'time' : {
'start' : 0,
'end' : 30,
'step' : 1
},
'min_occ_file' : '../GIS/min_occ.shp',
'target_extent_animation' : '../GIS/target_extent_v3.0.shp', # for creating videos
'target_extent_map' : '../GIS/min_occ_envelope.shp', # for creating maps
'target_polygon' : '../GIS/PNG_Papua_Dissolved.shp' # for creating probability map
}