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.gitignore
bin/cbot_checker
bin/email_project_followers_run_complete_archived
bin/event_notifications
bin/ga_II_checker
bin/generate_samplesheet
bin/hiseq_checker
bin/illumina_seq_fails2rt
bin/InstrumentPoller
bin/miseq_checker
bin/npg_daemon_control
bin/staging_area_monitor
bin/update_sensors
bin/utilisation_loader
Build.PL
cgi-bin/locate_runfolder
cgi-bin/npg
cgi-bin/reflector
cgi-bin/storage
Changes
data/config.ini
data/gfx/1G_PE.png
data/gfx/1G.png
data/gfx/cBot.png
data/gfx/disconnect.png
data/gfx/drive_error.png
data/gfx/HiSeq.png
data/gfx/HK_PE.png
data/gfx/HK.png
data/gfx/MiSeq.png
data/httpd.conf
data/npg_tracking_email/templates/devel_header.tt2
data/npg_tracking_email/templates/instrument_annotation.tt2
data/npg_tracking_email/templates/instrument_status_change.tt2
data/npg_tracking_email/templates/lane_detail.tt2
data/npg_tracking_email/templates/npg_qc_web_url.tt2
data/npg_tracking_email/templates/npg_qsea_web_url.tt2
data/npg_tracking_email/templates/npg_tracking_web_url.tt2
data/npg_tracking_email/templates/run_annotation.tt2
data/npg_tracking_email/templates/run_archived.tt2
data/npg_tracking_email/templates/run_complete.tt2
data/npg_tracking_email/templates/run_lane_annotation.tt2
data/npg_tracking_email/templates/run_status_change.tt2
data/npg_tracking_email/templates/signature.tt2
data/schema.txt
data/templates/actions.tt2
data/templates/administration_create_entity_type.tt2
data/templates/administration_create_instrument_mod.tt2
data/templates/administration_create_instrument_status.tt2
data/templates/administration_create_run_status.tt2
data/templates/administration_create_usergroup.tt2
data/templates/administration_create_user_to_usergroup.tt2
data/templates/administration_create_user.tt2
data/templates/administration_list.tt2
data/templates/annotation_comment_as_html.tt2
data/templates/annotation_input_box.tt2
data/templates/instrument_annotation_add_ajax.tt2
data/templates/instrument_annotation_create.tt2
data/templates/instrument_format_list.tt2
data/templates/instrument_format_read.tt2
data/templates/instrument_formats_menu.tt2
data/templates/instrument_list_cluster_station.tt2
data/templates/instrument_list_edit_statuses_instruments.tt2
data/templates/instrument_list_edit_statuses.tt2
data/templates/instrument_list_graphical.tt2
data/templates/instrument_list_textual.tt2
data/templates/instrument_list.tt2
data/templates/instrument_list_xml.tt2
data/templates/instrument_make_change_menu.tt2
data/templates/instrument_mod_add_ajax.tt2
data/templates/instrument_mod_create.tt2
data/templates/instrument_mod_create_xml.tt2
data/templates/instrument_mod_list.tt2
data/templates/instrument_mod_list_xml.tt2
data/templates/instrument_mod_read_xml.tt2
data/templates/instrument_mod_table.tt2
data/templates/instrument_mod_update_mods.tt2
data/templates/instrument_mod_update.tt2
data/templates/instrument_read_ajax.tt2
data/templates/instrument_read_runs.tt2
data/templates/instrument_read.tt2
data/templates/instrument_read_xml.tt2
data/templates/instrument_status_add.tt2
data/templates/instrument_status_annotation_add_ajax.tt2
data/templates/instrument_status_annotation_create.tt2
data/templates/instrument_status_annotation.tt2
data/templates/instrument_status_create.tt2
data/templates/instrument_status_create_xml.tt2
data/templates/instrument_status_list_graphical.tt2
data/templates/instrument_status_list.tt2
data/templates/instrument_status_list_up_down_xml.tt2
data/templates/instrument_status_menu.tt2
data/templates/instrument_status_read_xml.tt2
data/templates/instrument_top.tt2
data/templates/instrument_update_statuses.tt2
data/templates/instrument_utilisation_create.tt2
data/templates/instrument_utilisation_create_xml.tt2
data/templates/instrument_utilisation_list_graphical_line90.tt2
data/templates/instrument_utilisation_list_graphical_line.tt2
data/templates/instrument_utilisation_list_graphical.tt2
data/templates/instrument_utilisation_list_text90.tt2
data/templates/instrument_utilisation_list.tt2
data/templates/instrument_utilisation_menu.tt2
data/templates/intensity_list.tt2
data/templates/manufacturer_add.tt2
data/templates/manufacturer_create.tt2
data/templates/manufacturer_list.tt2
data/templates/manufacturer_read.tt2
data/templates/method_not_used.tt2
data/templates/run_add_flowcell_ajax.tt2
data/templates/run_add_pair_ajax.tt2
data/templates/run_add.tt2
data/templates/run_annotation_add_ajax.tt2
data/templates/run_annotation_add_input_form.tt2
data/templates/run_annotation_create_multiple_run_annotations.tt2
data/templates/run_annotation_create.tt2
data/templates/run_annotation_create_xml.tt2
data/templates/run_annotation_read_xml.tt2
data/templates/run_annotation_tables.tt2
data/templates/run_create.tt2
data/templates/run_lane_annotation_add_ajax.tt2
data/templates/run_lane_annotation_add_input_form.tt2
data/templates/run_lane_annotation_create.tt2
data/templates/run_lane_list_tag.tt2
data/templates/run_lane_read.tt2
data/templates/run_lane_read_xml.tt2
data/templates/run_lane_row_xml.tt2
data/templates/run_lane_update_all_good_bad.tt2
data/templates/run_lane_update_good_bad.tt2
data/templates/run_lane_update_tags.tt2
data/templates/run_lane_update_xml.tt2
data/templates/run_list_all_run_status_ajax.tt2
data/templates/run_list_footer_xml.tt2
data/templates/run_list_header_xml.tt2
data/templates/run_list_recent_running_runs_xml.tt2
data/templates/run_list_row_simple_xml.tt2
data/templates/run_list_row_xml.tt2
data/templates/run_list_stuck_runs.tt2
data/templates/run_list_summary.tt2
data/templates/run_list_summary_xml.tt2
data/templates/run_list.tt2
data/templates/run_list_xml_frag.tt2
data/templates/run_read_simple_xml.tt2
data/templates/run_read.tt2
data/templates/run_read_xml.tt2
data/templates/run_status_create.tt2
data/templates/run_status_create_xml.tt2
data/templates/run_status_dict_list_xml.tt2
data/templates/run_status_dict_read_footer_xml.tt2
data/templates/run_status_dict_read_header_xml.tt2
data/templates/run_status_dict_read_xml.tt2
data/templates/run_status_list_xml.tt2
data/templates/run_status_read_xml.tt2
data/templates/run_status_table.tt2
data/templates/run_update_good_bad.tt2
data/templates/run_update_statuses.tt2
data/templates/run_update_tags.tt2
data/templates/run_update.tt2
data/templates/run_update_xml.tt2
data/templates/run_verified.tt2
data/templates/search_list_advanced_ajax.tt2
data/templates/search_list_advanced.tt2
data/templates/search_list_advanced_xml.tt2
data/templates/search_list.tt2
data/templates/search_list_xml.tt2
data/templates/search_read.tt2
data/templates/tag_form_ajax.tt2
data/templates/usage_list.tt2
data/templates/user2usergroup_create.tt2
data/templates/user2usergroup_delete.tt2
data/templates/usergroup_read.tt2
data/templates/usergroup_read_xml.tt2
data/templates/user_list_rfid_check_ajax.tt2
data/templates/user_list.tt2
data/templates/user_read.tt2
data/templates/user_read_xml.tt2
data/templates/user_update.tt2
data/templates/urls.tt2
data/templates/warnings.tt2
htdocs/css/dirindex.css
htdocs/css/npg.css
htdocs/css/wtsi.css
htdocs/gfx/spinner.gif
htdocs/icons/navigation/key.gif
htdocs/icons/navigation/logout.gif
htdocs/icons/silk/add.png
htdocs/icons/silk/arrow_out.png
htdocs/icons/silk/calendar_view_month.png
htdocs/icons/silk/cancel.png
htdocs/icons/silk/cross.png
htdocs/icons/silk/delete.png
htdocs/icons/silk/link.png
htdocs/icons/silk/pencil_add.png
htdocs/icons/silk/tick.png
htdocs/icons/sanger-ico.png
htdocs/icons/sanger-logo.png
htdocs/js/npg.js
htdocs/js/npg_rfid.js
htdocs/js/npg_run.js
htdocs/js/scriptaculous/builder.js
htdocs/js/scriptaculous/controls.js
htdocs/js/scriptaculous/dragdrop.js
htdocs/js/scriptaculous/effects.js
htdocs/js/scriptaculous/scriptaculous.js
htdocs/js/scriptaculous/slider.js
htdocs/js/wtsi/prototype-1.6.0.3.js
htdocs/js/wtsi/sorttable.js
htdocs/js/wtsi/zebra.js
INSTALL
lib/Monitor/Cbot/InstrumentStatus.pm
lib/Monitor/Cbot.pm
lib/Monitor/Cbot/RunInfo.pm
lib/Monitor/Cbot/RunList.pm
lib/Monitor/Instrument.pm
lib/Monitor/Roles/Cycle.pm
lib/Monitor/Roles/Schema.pm
lib/Monitor/Roles/Username.pm
lib/Monitor/RunFolder.pm
lib/Monitor/RunFolder/Staging.pm
lib/Monitor/SRS/File.pm
lib/Monitor/SRS/FTP.pm
lib/Monitor/SRS/Local.pm
lib/Monitor/SRS.pm
lib/Monitor/Staging.pm
lib/npg/api/annotation.pm
lib/npg/api/base.pm
lib/npg/api/designation.pm
lib/npg/api/instrument.pm
lib/npg/api/instrument_status.pm
lib/npg/api/instrument_utilisation.pm
lib/npg/api/request.pm
lib/npg/api/run_annotation.pm
lib/npg/api/run_lane.pm
lib/npg/api/run.pm
lib/npg/api/run_status_dict.pm
lib/npg/api/run_status.pm
lib/npg/api/usergroup.pm
lib/npg/api/user.pm
lib/npg/api/util.pm
lib/npg/authentication/sanger_ldap.pm
lib/npg/authentication/sanger_sso.pm
lib/npg/controller.pm
lib/npg/decorator.pm
lib/npg/email/event/annotation/instrument.pm
lib/npg/email/event/annotation/run_lane.pm
lib/npg/email/event/annotation/run.pm
lib/npg/email/event.pm
lib/npg/email/event/status_change/instrument.pm
lib/npg/email/event/status_change/run.pm
lib/npg/email.pm
lib/npg/email/roles/event_attributes.pm
lib/npg/email/roles/instrument.pm
lib/npg/email/run/complete_archived.pm
lib/npg/email/run.pm
lib/npg/email/run/status_change.pm
lib/npg/model/administration.pm
lib/npg/model/annotation.pm
lib/npg/model/cost_code.pm
lib/npg/model/cost_group.pm
lib/npg/model/designation.pm
lib/npg/model/entity_type.pm
lib/npg/model/event.pm
lib/npg/model/event_type.pm
lib/npg/model/event_type_subscriber.pm
lib/npg/model/instrument_annotation.pm
lib/npg/model/instrument_designation.pm
lib/npg/model/instrument_format.pm
lib/npg/model/instrument_mod_dict.pm
lib/npg/model/instrument_mod.pm
lib/npg/model/instrument.pm
lib/npg/model/instrument_status_annotation.pm
lib/npg/model/instrument_status_dict.pm
lib/npg/model/instrument_status.pm
lib/npg/model/instrument_utilisation.pm
lib/npg/model/manufacturer.pm
lib/npg/model.pm
lib/npg/model/run_annotation.pm
lib/npg/model/run_lane_annotation.pm
lib/npg/model/run_lane.pm
lib/npg/model/run.pm
lib/npg/model/run_read.pm
lib/npg/model/run_status_dict.pm
lib/npg/model/run_status.pm
lib/npg/model/search.pm
lib/npg/model/tag_frequency.pm
lib/npg/model/tag.pm
lib/npg/model/tag_run_lane.pm
lib/npg/model/tag_run.pm
lib/npg/model/usage.pm
lib/npg/model/user2usergroup.pm
lib/npg/model/usergroup.pm
lib/npg/model/user.pm
lib/npg/samplesheet/auto.pm
lib/npg/samplesheet.pm
lib/npg/sensors.pm
lib/npg_testing/db.pm
lib/npg_testing/html.pm
lib/npg_testing/intweb.pm
lib/npg_tracking/daemon.pm
lib/npg_tracking/daemon/jenkins.pm
lib/npg_tracking/daemon/staging.pm
lib/npg_tracking/daemon/samplesheet.pm
lib/npg_tracking/data/bait/find.pm
lib/npg_tracking/data/bait.pm
lib/npg_tracking/data/reference/find.pm
lib/npg_tracking/data/reference/info.pm
lib/npg_tracking/data/reference/list.pm
lib/npg_tracking/data/reference.pm
lib/npg_tracking/glossary/lane.pm
lib/npg_tracking/glossary/run.pm
lib/npg_tracking/glossary/tag.pm
lib/npg_tracking/illumina/run/folder/location.pm
lib/npg_tracking/illumina/run/folder.pm
lib/npg_tracking/illumina/run/folder/validation.pm
lib/npg_tracking/illumina/run/lims/samplesheet.pm
lib/npg_tracking/illumina/run/long_info.pm
lib/npg_tracking/illumina/run.pm
lib/npg_tracking/illumina/run/short_info.pm
lib/npg_tracking/Schema.pm
lib/npg_tracking/Schema/Result/Annotation.pm
lib/npg_tracking/Schema/Result/CostCode.pm
lib/npg_tracking/Schema/Result/CostGroup.pm
lib/npg_tracking/Schema/Result/Designation.pm
lib/npg_tracking/Schema/Result/EntityType.pm
lib/npg_tracking/Schema/Result/Event.pm
lib/npg_tracking/Schema/Result/EventType.pm
lib/npg_tracking/Schema/Result/EventTypeService.pm
lib/npg_tracking/Schema/Result/EventTypeSubscriber.pm
lib/npg_tracking/Schema/Result/ExtService.pm
lib/npg_tracking/Schema/Result/InstrumentAnnotation.pm
lib/npg_tracking/Schema/Result/InstrumentDesignation.pm
lib/npg_tracking/Schema/Result/InstrumentFormat.pm
lib/npg_tracking/Schema/Result/InstrumentModDict.pm
lib/npg_tracking/Schema/Result/InstrumentMod.pm
lib/npg_tracking/Schema/Result/Instrument.pm
lib/npg_tracking/Schema/Result/InstrumentStatusAnnotation.pm
lib/npg_tracking/Schema/Result/InstrumentStatusDict.pm
lib/npg_tracking/Schema/Result/InstrumentStatus.pm
lib/npg_tracking/Schema/Result/InstrumentUtilisation.pm
lib/npg_tracking/Schema/Result/MailRunProjectFollower.pm
lib/npg_tracking/Schema/Result/ManualQcStatus.pm
lib/npg_tracking/Schema/Result/Manufacturer.pm
lib/npg_tracking/Schema/Result/RunAnnotation.pm
lib/npg_tracking/Schema/Result/RunLaneAnnotation.pm
lib/npg_tracking/Schema/Result/RunLane.pm
lib/npg_tracking/Schema/Result/RunLaneStatusDict.pm
lib/npg_tracking/Schema/Result/RunLaneStatus.pm
lib/npg_tracking/Schema/Result/Run.pm
lib/npg_tracking/Schema/Result/RunRead.pm
lib/npg_tracking/Schema/Result/RunStatusDict.pm
lib/npg_tracking/Schema/Result/RunStatus.pm
lib/npg_tracking/Schema/Result/SensorDataInstrument.pm
lib/npg_tracking/Schema/Result/SensorData.pm
lib/npg_tracking/Schema/Result/SensorInstrument.pm
lib/npg_tracking/Schema/Result/Sensor.pm
lib/npg_tracking/Schema/Result/StCache.pm
lib/npg_tracking/Schema/Result/TagFrequency.pm
lib/npg_tracking/Schema/Result/Tag.pm
lib/npg_tracking/Schema/Result/TagRunLane.pm
lib/npg_tracking/Schema/Result/TagRun.pm
lib/npg_tracking/Schema/Result/User2usergroup.pm
lib/npg_tracking/Schema/Result/Usergroup.pm
lib/npg_tracking/Schema/Result/User.pm
lib/npg_tracking/util/db_connect.pm
lib/npg_tracking/util/messages.pm
lib/npg_tracking/util/types.pm
lib/npg/util/image/colourmap.pm
lib/npg/util/image/graph.pm
lib/npg/util/image/heatmap.pm
lib/npg/util/image/image_map.pm
lib/npg/util/image/image.pm
lib/npg/util/image/merge.pm
lib/npg/util/image/scale.pm
lib/npg/util/mailer.pm
lib/npg/util.pm
lib/npg/view/administration.pm
lib/npg/view/annotation.pm
lib/npg/view/error.pm
lib/npg/view/instrument_annotation.pm
lib/npg/view/instrument_format.pm
lib/npg/view/instrument_mod.pm
lib/npg/view/instrument.pm
lib/npg/view/instrument_status_annotation.pm
lib/npg/view/instrument_status.pm
lib/npg/view/instrument_utilisation.pm
lib/npg/view/intensity.pm
lib/npg/view/manufacturer.pm
lib/npg/view.pm
lib/npg/view/run_annotation.pm
lib/npg/view/run_lane_annotation.pm
lib/npg/view/run_lane.pm
lib/npg/view/run.pm
lib/npg/view/run_status_dict.pm
lib/npg/view/run_status.pm
lib/npg/view/search.pm
lib/npg/view/usage.pm
lib/npg/view/user2usergroup.pm
lib/npg/view/usergroup.pm
lib/npg/view/user.pm
lib/st/api/base.pm
lib/st/api/batch.pm
lib/st/api/event.pm
lib/st/api/lims.pm
lib/st/api/lims/xml.pm
lib/st/api/project.pm
lib/st/api/sample.pm
lib/st/api/study.pm
Makefile.PL.WEB
MANIFEST
README
REDESIGN_PROPOSAL
scripts/gitver
scripts/upgrade_schema/upgrade_schema-10.0
scripts/upgrade_schema/upgrade_schema-11.0
scripts/upgrade_schema/upgrade_schema_113_to_126
scripts/upgrade_schema/upgrade_schema-12.0
scripts/upgrade_schema/upgrade_schema-14.0
scripts/upgrade_schema/upgrade_schema-15.0
scripts/upgrade_schema/upgrade_schema_155_to_158
scripts/upgrade_schema/upgrade_schema-17.0
scripts/upgrade_schema/upgrade_schema-20.0
scripts/upgrade_schema/upgrade_schema-22.0
scripts/upgrade_schema/upgrade_schema-25.0
scripts/upgrade_schema/upgrade_schema-26.0
scripts/upgrade_schema/upgrade_schema-26.1
scripts/upgrade_schema/upgrade_schema-28.0
scripts/upgrade_schema/upgrade_schema-29.0
scripts/upgrade_schema/upgrade_schema-30.0
scripts/upgrade_schema/upgrade_schema-40
scripts/upgrade_schema/upgrade_schema-4.0
scripts/upgrade_schema/upgrade_schema-41.0
scripts/upgrade_schema/upgrade_schema-42.0
scripts/upgrade_schema/upgrade_schema-43.0
scripts/upgrade_schema/upgrade_schema-44.0
scripts/upgrade_schema/upgrade_schema-46.0
scripts/upgrade_schema/upgrade_schema-47.0
scripts/upgrade_schema/upgrade_schema-48.0
scripts/upgrade_schema/upgrade_schema-5.0
scripts/upgrade_schema/upgrade_schema-52.0
scripts/upgrade_schema/upgrade_schema-54.0
scripts/upgrade_schema/upgrade_schema-57.0
scripts/upgrade_schema/upgrade_schema-58.0
scripts/upgrade_schema/upgrade_schema-61.0
scripts/upgrade_schema/upgrade_schema-62.0
scripts/upgrade_schema/upgrade_schema-64.0
scripts/upgrade_schema/upgrade_schema-68.2
scripts/upgrade_schema/upgrade_schema-69.0
scripts/upgrade_schema/upgrade_schema-7.0
scripts/upgrade_schema/upgrade_schema-72.0
scripts/upgrade_schema/upgrade_schema-72.8
scripts/upgrade_schema/upgrade_schema-9.0
scripts/web_deploy
t/00-critic.t
t/00-distribution.t
t/00-podcoverage.t
t/00-pod.t
t/10-authentication-sanger_ldap.t
t/10-authentication-sanger_sso.t
t/10-bait.t
t/10-model-administration.t
t/10-model-annotations.t
t/10-model-cost_code.pm
t/10-model-cost_group.pm
t/10-model-designation.t
t/10-model-entity_type.t
t/10-model-event.t
t/10-model-event_type.t
t/10-model-instrument_annotation.t
t/10-model-instrument_designation.t
t/10-model-instrument_format.t
t/10-model-instrument_mod_dict.t
t/10-model-instrument_mod.t
t/10-model-instrument_status_annotation.t
t/10-model-instrument_status_dict.t
t/10-model-instrument_status.t
t/10-model-instrument_status-uptime.t
t/10-model-instrument.t
t/10-model-instrument_utilisation.t
t/10-model-manufacturer.t
t/10-model-run_annotation.t
t/10-model-run_lane_annotation.t
t/10-model-run_lane.t
t/10-model-run_lane_tags.t
t/10-model-run_loader_info.t
t/10-model-run_read.t
t/10-model-run_status-active_runs.t
t/10-model-run_status_dict.t
t/10-model-run_status.t
t/10-model-run.t
t/10-model-run_tags.t
t/10-model-search-advanced.t
t/10-model-search.t
t/10-model.t
t/10-model-tag.t
t/10-model-usage.t
t/10-model-usergroup.t
t/10-model-user-runs_loaded.t
t/10-model-user.t
t/10-model-user_usergroup.t
t/10-npg_testing-db.t
t/10-npg_testing-html.t
t/10-npg_tracking-util-db_connect.t
t/10-npg_tracking-util-messages.t
t/10-reference-find.t
t/10-reference-info.t
t/10-reference-list.t
t/10-reference.t
t/10-scripts_compile.t
t/10-util.t
t/11-npg_tracking-Schema.t
t/14-dbic-EntityType.t
t/14-dbic-Event.t
t/14-dbic-EventType.t
t/14-dbic-InstrumentStatusDict.t
t/14-dbic-Instrument.t
t/14-dbic-RunLaneStatusDict.t
t/14-dbic-RunLaneStatus.t
t/14-dbic-RunStatusDict.t
t/14-dbic-RunStatus.t
t/14-dbic-Run.t
t/14-dbic-Sensor.t
t/14-dbic-Tag.t
t/14-dbic-User.t
t/16-npg_tracking-daemon-jenkins.t
t/16-npg_tracking-daemon-samplesheet.t
t/16-npg_tracking-daemon-staging.t
t/16-npg_tracking-daemon.t
t/20-model-run_and_instrument_status.t
t/20-view-administration.t
t/20-view-error.t
t/20-view-instrument_mod.t
t/20-view-instrument-no_runs.t
t/20-view-instrument-run_cancelled.t
t/20-view-instrument-run_pending.t
t/20-view-instrument_status_annotation.t
t/20-view-instrument_status.t
t/20-view-instrument.t
t/20-view-instrument_utilisation.t
t/20-view-run_annotation.t
t/20-view-run-create_tags.t
t/20-view-run_lane_annotation.t
t/20-view-run_lane.t
t/20-view-run_lane-update_tags.t
t/20-view-run-refactored_methods.t
t/20-view-run_status_dict.t
t/20-view-run_status.t
t/20-view-run.t
t/20-view-search-advanced.t
t/20-view-search.t
t/20-view-user2usergroup.t
t/20-view-usergroup.t
t/20-view-user.t
t/25-template-actions.t
t/30-api-annotation.t
t/30-api-base.t
t/30-api-instrument_status.t
t/30-api-instrument.t
t/30-api-instrument_utilisation.t
t/30-api-request.t
t/30-api-run_lane.t
t/30-api-run_status_dict.t
t/30-api-run.t
t/30-api-util.t
t/34-monitor-cbot-instrument_status.t
t/34-monitor-cbot-run_info.t
t/34-monitor-cbot-run_list.t
t/34-monitor-cbot.t
t/34-monitor-instrument.t
t/34-monitor-runfolder-staging.t
t/34-monitor-runfolder.t
t/34-monitor-srs-file.t
t/34-monitor-srs-ftp.t
t/34-monitor-srs-local.t
t/34-monitor-srs.t
t/34-monitor-staging.t
t/40-st-base.t
t/40-st-batch.t
t/40-st-event.t
t/40-st-lims-insert_size.t
t/40-st-lims.t
t/40-st-project.t
t/40-st-sample.t
t/40-st-study.t
t/45-npg-st-api-traversal.t
t/45-st-api-lims-traversal.t
t/47-samplesheet-auto.t
t/47-samplesheet.t
t/50-controller.t
t/50-decorator.t
t/60-illumina-run-folder-location.t
t/60-illumina-run-folder.t
t/60-illumina-run-folder-validation.t
t/60-illumina-run-long_info.t
t/60-illumina-run-short_info.t
t/60-illumina-run.t
t/60-illumina-run-lims-samplesheet.t
t/60-util-image_graph.t
t/60-util-image_heatmap.t
t/60-util-image_map.t
t/60-util-image_merge.t
t/60-util-image_scale.t
t/60-util-mailer.t
t/70-menu-instruments_formats.t
t/70-menu-instruments_make_change.t
t/70-menu-instruments_status.t
t/70-menu-instruments_utilisation.t
t/80-email-instrument_annotation.t
t/80-email-instrument_status_change.t
t/80-email-run_annotation.t
t/80-email-run_complete_archived.t
t/80-email-run_lane_annotation.t
t/80-email-run_status_change.t
t/80-email-run.t
t/80-sensor.t
t/81-email-event.t
t/90-reference.t
t/200-bin-npg_daemon_control.t
t/data/cbot/cBot1/GetRunList.xml
t/data/cbot/cBot1/InstrumentStatus.xml
t/data/cbot/cBot1/RunInfo/091111_OEM-0B6VO7E14KH_0001.xml
t/data/cbot/cBot2/InstrumentStatus.xml
t/data/dbic_fixtures/000-Designation.yml
t/data/dbic_fixtures/000-EntityType.yml
t/data/dbic_fixtures/000-InstrumentStatusDict.yml
t/data/dbic_fixtures/000-Manufacturer.yml
t/data/dbic_fixtures/000-RunLaneStatusDict.yml
t/data/dbic_fixtures/000-RunStatusDict.yml
t/data/dbic_fixtures/000-Tag.yml
t/data/dbic_fixtures/000-Usergroup.yml
t/data/dbic_fixtures/000-User.yml
t/data/dbic_fixtures/100-EventType.yml
t/data/dbic_fixtures/100-InstrumentFormat.yml
t/data/dbic_fixtures/100-User2usergroup.yml
t/data/dbic_fixtures/200-Event.yml
t/data/dbic_fixtures/200-Instrument.yml
t/data/dbic_fixtures/200-Sensor.yml
t/data/dbic_fixtures/300-RunLane.yml
t/data/dbic_fixtures/300-Run.yml
t/data/dbic_fixtures/400-InstrumentAnnotation.yml
t/data/dbic_fixtures/400-RunAnnotation.yml
t/data/dbic_fixtures/400-RunLaneAnnotation.yml
t/data/dbic_fixtures/400-RunLaneStatus.yml
t/data/dbic_fixtures/400-RunRead.yml
t/data/dbic_fixtures/400-RunStatus.yml
t/data/dbic_fixtures/400-SensorInstrument.yml
t/data/dbic_fixtures/400-TagRun.yml
t/data/email/st/batches/4861.xml
t/data/email/st/batches/5305.xml
t/data/email/st/batches/9009.xml
t/data/email/st/studies/391.xml
t/data/fixtures/000-cost_group.yml
t/data/fixtures/000-designation.yml
t/data/fixtures/000-entity_type.yml
t/data/fixtures/000-ext_service.yml
t/data/fixtures/000-instrument_mod_dict.yml
t/data/fixtures/000-instrument_status_dict.yml
t/data/fixtures/000-manufacturer.yml
t/data/fixtures/000-run_status_dict.yml
t/data/fixtures/000-tag.yml
t/data/fixtures/000-usergroup.yml
t/data/fixtures/000-user.yml
t/data/fixtures/100-annotation.yml
t/data/fixtures/100-cost_code.yml
t/data/fixtures/100-event_type.yml
t/data/fixtures/100-instrument_format.yml
t/data/fixtures/100-tag_frequency.yml
t/data/fixtures/100-user2usergroup.yml
t/data/fixtures/200-event_type_service.yml
t/data/fixtures/200-event_type_subscriber.yml
t/data/fixtures/200-event.yml
t/data/fixtures/200-instrument.yml
t/data/fixtures/300-instrument_designation.yml
t/data/fixtures/300-run_lane.yml
t/data/fixtures/300-run.yml
t/data/fixtures/400-instrument_mod.yml
t/data/fixtures/400-instrument_status_annotation.yml
t/data/fixtures/400-instrument_status.yml
t/data/fixtures/400-instrument_utilisation.yml
t/data/fixtures/400-run_annotation.yml
t/data/fixtures/400-run_lane_annotation.yml
t/data/fixtures/400-run_status.yml
t/data/fixtures/400-tag_run_lane.yml
t/data/fixtures/400-tag_run.yml
t/data/fixtures/500-st_cache.yml
t/data/gaii/Events.log
t/data/gaii/Events.Update
t/data/gaii/ftp/Find_Me
t/data/gaii/ftp/Runs/100611_IL2_0022/Data/Intensities/.gitignore
t/data/gaii/ftp/Runs/100611_IL2_0022/Recipe_GA2-PEM_2x76Cycle_v7.7.xml
t/data/gaii/ftp/Runs/100611_IL2_mb110610/.gitignore
t/data/gaii/ftp/Runs/100628_IL2_04929/Data/.gitignore
t/data/gaii/ftp/Runs/100628_IL2_04929/Run.completed
t/data/gaii/ftp/Runs/100914_HS3_05281_A_205MBABXX/Basecalling_Netcopy_complete_READ2.txt
t/data/gaii/ftp/Runs/100914_HS3_05281_A_205MBABXX/Data/reports/StatusUpdate.xml
t/data/gaii/ftp/Runs/100914_HS3_05281_A_205MBABXX/ImageAnalysis_Netcopy_complete_READ2.txt
t/data/gaii/ftp/Runs/100914_HS3_05281_A_205MBABXX/RunInfo.xml
t/data/gaii/ftp/Runs/this_is_not_a_run/.gitignore
t/data/gaii/staging/IL12/incoming/100721_IL12_05222/Config/TileLayout.xml
t/data/gaii/staging/IL12/incoming/100721_IL12_05222/Data/Intensities/L001/.gitignore
t/data/gaii/staging/IL12/incoming/100721_IL12_05222/Events.log
t/data/gaii/staging/IL12/incoming/100721_IL12_05222/Recipe_GA2-PEM_2x76Cycle_v7.7.xml
t/data/gaii/staging/IL3/incoming/100622_IL3_01234/Config/TileLayout.xml
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