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setup.py
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setup.py
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from distutils.core import setup
pluginPkgs = []
pluginPkgs.append('stamp.plugins')
pluginPkgs.append('stamp.plugins.common')
pluginPkgs.append('stamp.plugins.common.multipleComparisonCorrections')
pluginPkgs.append('stamp.plugins.groups')
pluginPkgs.append('stamp.plugins.groups.effectSizeFilters')
pluginPkgs.append('stamp.plugins.groups.plots')
pluginPkgs.append('stamp.plugins.groups.plots.configGUI')
pluginPkgs.append('stamp.plugins.groups.statisticalTests')
pluginPkgs.append('stamp.plugins.multiGroups')
pluginPkgs.append('stamp.plugins.multiGroups.effectSizeFilters')
pluginPkgs.append('stamp.plugins.multiGroups.plots')
pluginPkgs.append('stamp.plugins.multiGroups.plots.configGUI')
pluginPkgs.append('stamp.plugins.multiGroups.postHoc')
pluginPkgs.append('stamp.plugins.multiGroups.statisticalTests')
pluginPkgs.append('stamp.plugins.samples')
pluginPkgs.append('stamp.plugins.samples.effectSizeFilters')
pluginPkgs.append('stamp.plugins.samples.plots')
pluginPkgs.append('stamp.plugins.samples.plots.configGUI')
pluginPkgs.append('stamp.plugins.samples.statisticalTests')
pluginPkgs.append('stamp.plugins.samples.confidenceIntervalMethods')
metagenomicPkgs = []
metagenomicPkgs.append('stamp.metagenomics')
metagenomicPkgs.append('stamp.metagenomics.fileIO')
metagenomicPkgs.append('stamp.metagenomics.simulations')
metagenomicPkgs.append('stamp.metagenomics.stats')
metagenomicPkgs.append('stamp.metagenomics.stats.CI')
metagenomicPkgs.append('stamp.metagenomics.stats.distributions')
metagenomicPkgs.append('stamp.metagenomics.stats.empiricalTests')
metagenomicPkgs.append('stamp.metagenomics.stats.tests')
root_files = [('.', ['LICENSE.txt']),
('./manual', ['./manual/STAMP_Users_Guide.pdf']),
('.', ['README.md'])]
setup(
name='STAMP',
version='2.1.3',
author='Donovan Parks, Rob Beiko',
author_email='[email protected]',
packages=['stamp', 'stamp.GUI'] + pluginPkgs + metagenomicPkgs,
package_data={'stamp': ['data/*.txt']},
scripts=['bin/STAMP', 'scripts/checkHierarchy.py'],
license='LICENSE.txt',
url='http://pypi.python.org/pypi/stamp/',
description='A graphical software package for analyzing taxonomic and functional profiles.',
data_files = root_files,
long_description=open('README.md').read(),
install_requires=[
"numpy >= 1.9.1",
"scipy >= 0.15.1",
"matplotlib >= 1.4.2",
"six >= 1.3",
"biom-format >= 2.0.1",
"pyqi >= 0.3.2",],
)