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Non reciprocal AAI #37

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drs opened this issue Feb 23, 2021 · 0 comments
Open

Non reciprocal AAI #37

drs opened this issue Feb 23, 2021 · 0 comments

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@drs
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drs commented Feb 23, 2021

Hello,

Is it possible to use compareM to compute non-reciprocal AAI (different query and target genes). I ran it using the following command :

nice -19 comparem aai -c 36 query_genes.faa hits_sorted.tsv 1v2-AAI

But all AAI values were 0 (with 0 ortholog genes for all genomes).
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@drs