Problem installing the conda package

[omidshy]

Bug summary

Hi,
I am getting a number of conflicts for incompatible packages when trying to install DeePMD-kit using conda.

DeePMD-kit Version

2.1.4

TensorFlow Version

2.9.0

How did you download the software?

conda

Input Files, Running Commands, Error Log, etc.

command:

conda create -n dpmd deepmd-kit=*=*gpu libdeepmd=*=*gpu lammps cudatoolkit=11.6 horovod -c https://conda.deepmodeling.com -c defaults

log:

Collecting package metadata (repodata.json): done
Solving environment: - 
Found conflicts! Looking for incompatible packages.
This can take several minutes.  Press CTRL-C to abort.
failed                                                                                                                                                                                                         -  

UnsatisfiableError: The following specifications were found to be incompatible with each other:

Output in format: Requested package -> Available versions

Package icu conflicts for:
deepmd-kit[build=*gpu] -> tensorflow=2.9[build=cuda*] -> icu[version='>=68.1,<69.0a0']
libdeepmd[build=*gpu] -> libtensorflow_cc=2.9[build=cuda*] -> icu[version='>=68.1,<69.0a0|>=70.1,<71.0a0|>=69.1,<70.0a0']
horovod -> tensorflow=2.9[build=cuda*] -> icu[version='>=68.1,<69.0a0']

Package libstdcxx-ng conflicts for:
deepmd-kit[build=*gpu] -> libstdcxx-ng[version='>=5.4.0|>=7.5.0|>=7.3.0']
deepmd-kit[build=*gpu] -> cudatoolkit[version='>=11.6,<12'] -> libstdcxx-ng[version='>=10.3.0|>=9.4.0|>=11.2.0|>=12|>=4.9|>=9.3.0|>=7.2.0|>=3.4']

Package openmpi conflicts for:
horovod -> mpi4py -> openmpi[version='3.0.*|>=3.1,<3.2.0a0|>=4.0,<4.1.0a0|>=4.1.4,<5.0a0|>=4.1.3,<5.0a0|>=4.1,<4.2.0a0|>=4.0,<5.0.0a0']
deepmd-kit[build=*gpu] -> h5py -> openmpi[version='>=3.1,<3.2.0a0|>=3.1.4,<3.2.0a0|>=4.0.1,<5.0.0a0|>=4.0.2,<5.0.0a0|>=4.0.4,<5.0.0a0|>=4.0.5,<5.0.0a0|>=4.1.0,<5.0a0|>=4.1.1,<5.0a0|>=4.1.2,<5.0a0|>=4.1.4,<5.0a0']
lammps -> openmpi[version='3.0.*|3.1.*|>=3.1,<3.2.0a0|>=4.0,<5.0.0a0|>=4.1,<4.2.0a0|>=4.1.0,<5.0a0|>=4.1.1,<5.0a0|>=4.1.2,<5.0a0|>=4.1.3,<5.0a0|>=4.1.4,<5.0a0']
lammps -> fftw[version='>=3.3.9,<4.0a0'] -> openmpi[version='>=3.1.3,<3.2.0a0|>=4.0.1,<5.0.0a0|>=4.0.4,<5.0.0a0|>=4.0.5,<5.0.0a0|>=4.1.4,<4.2.0a0']

Package python conflicts for:
deepmd-kit[build=*gpu] -> python[version='>=3.10,<3.11.0a0|>=3.8,<3.9.0a0|>=3.9,<3.10.0a0|>=3.7,<3.8.0a0|>=3.6,<3.7.0a0|>=3.6']
deepmd-kit[build=*gpu] -> h5py -> python[version='2.7.*|3.5.*|3.6.*|>=2.7,<2.8.0a0|>=3.5,<3.6.0a0|3.4.*|>=2.7|>=3.5']

Package cudatoolkit conflicts for:
cudatoolkit=11.6
libdeepmd[build=*gpu] -> cudnn -> cudatoolkit[version='10.0.*|11.*|>=11.3,<11.4|>=10.1,<10.2|>=9.0,<9.1|>=9.2,<9.3|>=10.0,<10.1|>=10.2,<10.3|9.0.*|9.2.*|8.0.*|>=11.2,<12|10.2.*|11.0|11.0.*|9.2|9.2.*|10.0|10.0.*|11.1|11.1.*|>=11.2,<12.0a0']
horovod -> nccl[version='>=2.12.12.1,<3.0a0'] -> cudatoolkit[version='10.0|10.0.*|11.0|11.0.*|>=11.2,<12|11.1|11.1.*|>=11.2,<12.0a0|10.1.*|11.3.*|9.2|9.2.*']
horovod -> cudatoolkit[version='*|10.1|10.1.*|10.2|10.2.*|>=11.6,<12|>=11.3,<12|>=11.3.1,<11.4.0a0*|>=10.1.243,<10.2.0a0*']
libdeepmd[build=*gpu] -> cudatoolkit[version='10.1|10.1.*|10.2|10.2.*|>=11.6,<12|>=11.3,<12|>=11.3.1,<11.4.0a0|>=10.1.243,<10.2.0a0|>=9.2,<9.3.0a0|>=11.1.74,<11.2.0a0|>=11.0.221,<11.1.0a0|>=10.0.130,<10.1.0a0']

Package libtensorflow_cc conflicts for:
deepmd-kit[build=*gpu] -> libtensorflow_cc==1.14.0[build=gpu*]
libdeepmd[build=*gpu] -> libtensorflow_cc[version='1.14.0|2.0.0|2.1|2.5|2.7.*|2.9.*|2.9.0.*|2.7.0.*|2.4.1|2.3',build='gpu*|gpu*|gpu*|gpu*|cuda*|gpu*|gpu*']

Package _openmp_mutex conflicts for:
libdeepmd[build=*gpu] -> libgcc-ng[version='>=7.5.0'] -> _openmp_mutex[version='>=4.5']
horovod -> libgcc-ng[version='>=7.5.0'] -> _openmp_mutex[version='>=4.5']
cudatoolkit=11.6 -> libgcc-ng[version='>=7.5.0'] -> _openmp_mutex[version='>=4.5']
deepmd-kit[build=*gpu] -> libgcc-ng[version='>=7.5.0'] -> _openmp_mutex[version='>=4.5']
lammps -> libgcc-ng[version='>=7.5.0'] -> _openmp_mutex[version='>=4.5']

Package tensorflow-base conflicts for:
deepmd-kit[build=*gpu] -> tensorflow=2.9[build=cuda*] -> tensorflow-base[version='2.7.0|2.7.0|2.7.0|2.7.0|2.7.0|2.7.0|2.7.0|2.7.0|2.7.0|2.7.0|2.7.0|2.7.0|2.7.0|2.7.0|2.7.0|2.7.0|2.7.1|2.7.1|2.7.1|2.7.1|2.7.1|2.7.1|2.7.1|2.7.1|2.7.1|2.7.1|2.7.1|2.7.1|2.7.1|2.7.1|2.7.1|2.7.1|2.9.1',build='cuda112py39hd98b2dd_0|cuda112py37had06f64_0|cuda111py38hca068ee_0|cuda110py38h76162fe_0|cuda112py39h6917f46_0|cuda111py39h6f4cae7_0|cuda102py39hbb9dcef_0|cuda110py38h4cd2a3c_0|cuda110py39h7593abd_0|cuda112py310h680fca1_0|cuda110py310h1c8d5c9_0|cuda102py37h0d2b0d7_0|cuda102py38hba23241_0|cuda110py37h5235c7d_0|cuda110py310h31c0a5d_0|cuda110py38hd7529fe_0|cuda111py39hc0859d9_0|cuda111py37ha9dc7ab_0|cuda112py39h81abfd3_0|cuda112py310hc65a3b4_0|cuda112py38h47a61a2_0|cuda112py37h83f6acc_0|cuda111py38h346ca62_0|cuda111py310h12abe6f_0|cuda110py39h2c4febc_0|cuda102py310h282d6da_0|cuda102py39h4f2f7b8_0|cuda102py37hc592af7_0|cuda111py310h6b17f32_0|cuda110py37he1a3a50_0|cuda111py38h13b88b6_0|cuda102py310h5611d22_0|cuda102py38h5246720_0|cuda112py38h1f4bd8a_0|cuda111py37hdeab154_0|cuda112py37hf039c21_0|cuda102py38h021f141_0|cuda102py310hf4be40b_0|cuda102py39h15c874f_0|cuda102py37h44d275c_0|cuda110py310hae929b1_0|cuda110py39h0c9afd6_0|cuda110py37h3fa1966_0|cuda111py37hf266e69_0|cuda111py310h8463a45_0|cuda111py39h2b78b69_0|cuda112py310h2bd284a_0|cuda112py38hd3dc81e_0']
deepmd-kit[build=*gpu] -> tensorflow-base=2.5.0[build=gpu*]

Package scipy conflicts for:
deepmd-kit[build=*gpu] -> tensorflow-base=2.5.0[build=gpu*] -> scipy[version='>=1.6.2']
deepmd-kit[build=*gpu] -> scipy

Package cudnn conflicts for:
deepmd-kit[build=*gpu] -> tensorflow=2.9[build=cuda*] -> cudnn[version='7.*|>=7.6,<8.0a0|>=8.4.0.27,<9.0a0|>=8.2,<9.0a0|8.*']
deepmd-kit[build=*gpu] -> cudnn[version='>=7.6.0,<8.0a0']

Package tensorflow-estimator conflicts for:
horovod -> tensorflow-estimator
deepmd-kit[build=*gpu] -> tensorflow=2.9[build=cuda*] -> tensorflow-estimator[version='2.7.0|2.7.0|2.7.0|2.7.0|2.7.0|2.7.0|2.7.0|2.7.0|2.7.0|2.7.0|2.7.0|2.7.0|2.7.0|2.7.0|2.7.0|2.7.0|2.7.1|2.7.1|2.7.1|2.7.1|2.7.1|2.7.1|2.7.1|2.7.1|2.7.1|2.7.1|2.7.1|2.7.1|2.7.1|2.7.1|2.7.1|2.7.1|2.9.1|>=2.5.0,<2.6',build='cuda112py39h23446aa_0|cuda112py38hab8ae04_0|cuda112py310h922d117_0|cuda112py37h474db6c_0|cuda111py38h6ed5851_0|cuda102py38h4357c17_0|cuda112py37h25bb9bc_0|cuda111py39h27f8f48_0|cuda112py38hf5dcc89_0|cuda102py38h4357c17_0|cuda110py38h09c20b0_0|cuda111py38h6353a60_0|cuda112py310h2fa73eb_0|cuda110py310h4e8d1b5_0|cuda111py310h9f2f5e7_0|cuda110py310h4e8d1b5_0|cuda110py38h09c20b0_0|cuda111py39h27f8f48_0|cuda111py37h9373525_0|cuda112py37h25bb9bc_0|cuda112py38hf5dcc89_0|cuda112py310h2fa73eb_0|cuda112py39hd320b7a_0|cuda111py38h6353a60_0|cuda111py310h9f2f5e7_0|cuda110py39ha53fd0e_0|cuda110py37h41dd380_0|cuda102py310hac962ef_0|cuda102py38h4357c17_0|cuda102py37h80be449_0|cuda102py39h87695c4_0|cuda102py37h80be449_0|cuda110py37h41dd380_0|cuda110py39ha53fd0e_0|cuda102py310hac962ef_0|cuda102py39h87695c4_0|cuda111py37h9373525_0|cuda112py39hd320b7a_0|cuda102py310hac962ef_0|cuda102py39h87695c4_0|cuda102py37h80be449_0|cuda110py310h4e8d1b5_0|cuda110py38h09c20b0_0|cuda110py39ha53fd0e_0|cuda110py37h41dd380_0|cuda111py37hf54207c_0|cuda111py310h33dc607_0|cuda111py39h594ad97_0']
horovod -> tensorflow=2.9[build=cuda*] -> tensorflow-estimator[version='2.7.0|2.7.0|2.7.0|2.7.0|2.7.0|2.7.0|2.7.0|2.7.0|2.7.0|2.7.0|2.7.0|2.7.0|2.7.0|2.7.0|2.7.0|2.7.0|2.7.0|2.7.0|2.7.0|2.7.0|2.7.1|2.7.1|2.7.1|2.7.1|2.7.1|2.7.1|2.7.1|2.7.1|2.7.1|2.7.1|2.7.1|2.7.1|2.7.1|2.7.1|2.7.1|2.7.1|2.9.1|2.7.1|2.7.1|2.7.1|2.7.1|>=2.5.0,<2.6',build='cpu_py38h7d34d82_0|cpu_py39heaff504_0|cpu_py38h4e23bc6_0|cuda112py39h23446aa_0|cuda112py38hab8ae04_0|cuda112py310h922d117_0|cuda111py38h6ed5851_0|cuda110py39ha53fd0e_0|cuda110py38h09c20b0_0|cuda112py39hd320b7a_0|cuda112py37h25bb9bc_0|cuda111py37h9373525_0|cuda111py39h27f8f48_0|cuda112py38hf5dcc89_0|cuda102py38h4357c17_0|cuda110py38h09c20b0_0|cuda111py38h6353a60_0|cuda112py310h2fa73eb_0|cuda110py310h4e8d1b5_0|cpu_py39heaff504_0|cuda110py310h4e8d1b5_0|cuda110py38h09c20b0_0|cuda111py39h27f8f48_0|cuda111py37h9373525_0|cuda112py37h25bb9bc_0|cuda112py38hf5dcc89_0|cuda112py310h2fa73eb_0|cuda112py39hd320b7a_0|cuda111py38h6353a60_0|cuda111py310h9f2f5e7_0|cuda110py39ha53fd0e_0|cuda110py37h41dd380_0|cuda102py310hac962ef_0|cuda102py38h4357c17_0|cuda102py37h80be449_0|cuda102py39h87695c4_0|cpu_py37h813ee39_0|cpu_py38h4e23bc6_0|cpu_py310had6d012_0|cuda102py37h80be449_0|cuda111py310h9f2f5e7_0|cuda110py37h41dd380_0|cuda110py39ha53fd0e_0|cuda102py310hac962ef_0|cuda102py39h87695c4_0|cuda102py38h4357c17_0|cuda102py310hac962ef_0|cuda102py39h87695c4_0|cuda102py37h80be449_0|cuda110py310h4e8d1b5_0|cuda110py37h41dd380_0|cuda111py37hf54207c_0|cuda111py310h33dc607_0|cuda111py39h594ad97_0|cuda112py37h474db6c_0|cpu_py37h813ee39_0|cpu_py310had6d012_0|cpu_py310hb7a2f4b_0|cpu_py39ha241409_0|cpu_py37h6f16af5_0']

Package openssl conflicts for:
horovod -> python[version='>=3.9,<3.10.0a0'] -> openssl[version='>=1.0.2o,<1.0.3a|>=1.0.2p,<1.0.3a|>=1.1.1a,<1.1.2a|>=1.1.1d,<1.1.2a|>=1.1.1e,<1.1.2a|>=1.1.1g,<1.1.2a|>=1.1.1h,<1.1.2a|>=1.1.1i,<1.1.2a|>=1.1.1j,<1.1.2a|>=1.1.1k,<1.1.2a|>=1.1.1l,<1.1.2a|>=1.1.1n,<1.1.2a|>=1.1.1o,<1.1.2a|>=3.0.3,<4.0a0|>=3.0.2,<4.0a0|>=3.0.0,<4.0a0|>=1.1.1q,<1.1.2a|>=1.1.1f,<1.1.2a|>=1.1.1m,<1.1.2a|>=3.0.5,<4.0a0|>=1.1.1c,<1.1.2a|>=1.1.1b,<1.1.2a']
lammps -> hdf5[version='>=1.12.2,<1.12.3.0a0'] -> openssl[version='1.0.*|>=1.0.2m,<1.0.3a|>=1.0.2n,<1.0.3a|>=1.0.2o,<1.0.3a|>=1.0.2p,<1.0.3a|>=1.1.1a,<1.1.2a|>=1.1.1b,<1.1.2a|>=1.1.1c,<1.1.2a|>=1.1.1d,<1.1.2a|>=1.1.1e,<1.1.2a|>=1.1.1g,<1.1.2a|>=1.1.1j,<1.1.2a|>=1.1.1k,<1.1.2a|>=1.1.1n,<1.1.2a|>=1.1.1o,<1.1.2a|>=1.1.1q,<1.1.2a|>=3.0.5,<4.0a0|>=3.0.3,<4.0a0|>=1.1.1l,<1.1.2a|>=3.0.0,<4.0a0|>=1.1.1i,<1.1.2a|>=1.1.1h,<1.1.2a|>=1.1.1m,<1.1.2a|>=3.0.2,<4.0a0|>=1.1.1f,<1.1.2a|>=1.0.2l,<1.0.3a']
libdeepmd[build=*gpu] -> libtensorflow_cc=2.9[build=cuda*] -> openssl[version='>=1.1.1l,<1.1.2a|>=1.1.1o,<1.1.2a|>=1.1.1q,<1.1.2a']
deepmd-kit[build=*gpu] -> python[version='>=3.8,<3.9.0a0'] -> openssl[version='1.0.*|>=1.0.2m,<1.0.3a|>=1.0.2n,<1.0.3a|>=1.0.2o,<1.0.3a|>=1.0.2p,<1.0.3a|>=1.1.1a,<1.1.2a|>=1.1.1d,<1.1.2a|>=1.1.1e,<1.1.2a|>=1.1.1g,<1.1.2a|>=1.1.1j,<1.1.2a|>=1.1.1k,<1.1.2a|>=1.1.1l,<1.1.2a|>=1.1.1n,<1.1.2a|>=3.0.2,<4.0a0|>=3.0.0,<4.0a0|>=1.1.1i,<1.1.2a|>=1.1.1h,<1.1.2a|>=1.1.1f,<1.1.2a|>=1.1.1o,<1.1.2a|>=3.0.3,<4.0a0|>=1.1.1m,<1.1.2a|>=3.0.5,<4.0a0|>=1.1.1q,<1.1.2a|>=1.1.1c,<1.1.2a|>=1.1.1b,<1.1.2a|>=1.0.2l,<1.0.3a']

Package libprotobuf conflicts for:
deepmd-kit[build=*gpu] -> tensorflow=2.9[build=cuda*] -> libprotobuf[version='>=3.14.0,<3.15.0a0|>=3.20.1,<3.21.0a0']
deepmd-kit[build=*gpu] -> libprotobuf=3.7.1

Package libgcc-ng conflicts for:
deepmd-kit[build=*gpu] -> libgcc-ng[version='>=5.4.0|>=7.5.0|>=7.3.0']
deepmd-kit[build=*gpu] -> cudatoolkit[version='>=11.6,<12'] -> libgcc-ng[version='>=10.3.0|>=9.4.0|>=11.2.0|>=7.2.0|>=12|>=9.3.0|>=4.9|>=3.0']

Package openblas conflicts for:
lammps -> libblas[version='>=3.8.0,<4.0a0'] -> openblas[version='0.3.5.*|>=0.3.6,<0.3.7.0a0']
deepmd-kit[build=*gpu] -> numpy -> openblas[version='0.2.18.*|0.2.18|0.2.18.*|0.2.19|0.2.19.*|0.2.20|0.2.20.*|>=0.2.20,<0.2.21.0a0|>=0.3.3,<0.3.4.0a0|>=0.2.15']

Package numpy conflicts for:
deepmd-kit[build=*gpu] -> h5py -> numpy[version='1.10.*|1.11.*|1.12.*|1.13.*|>=1.11.3,<2.0a0|>=1.14.6,<2.0a0|>=1.16.6,<2.0a0|>=1.21.5,<2.0a0|>=1.21.2,<2.0a0|>=1.19.5,<2.0a0|>=1.21.6,<2.0a0|>=1.21.4,<2.0a0|>=1.18.5,<2.0a0|>=1.17.5,<2.0a0|>=1.19.4,<2.0a0|>=1.16.5,<2.0a0|>=1.19.2,<2.0a0|>=1.9.3,<2.0a0|>=1.8|>=1.8,<1.14|>=1.16,<1.23|>=1.21,<1.23|>=1.16.6,<1.23.0|>=1.21.2,<1.23.0|>=1.15.1,<2.0a0|>=1.18.1,<2.0a0|>=1.9|>=1.11|>=1.20.3,<2.0a0|>=1.20']
deepmd-kit[build=*gpu] -> numpy[version='>=1.13.3,<2.0a0']

Package mpi conflicts for:
lammps -> mpich[version='>=3.3.2,<3.4.0a0'] -> mpi==1.0[build='openmpi|mpich']
horovod -> mpich[version='>=3.3.2,<3.4.0a0'] -> mpi==1.0=mpich
libdeepmd[build=*gpu] -> mpich[version='>=3.3.2,<3.4.0a0'] -> mpi==1.0=mpich

Package tensorflow conflicts for:
deepmd-kit[build=*gpu] -> tensorflow[version='2.7.*|2.9.*',build=cuda*]
deepmd-kit[build=*gpu] -> tensorflow-gpu[version='>=2.4.1,<2.5.0a0'] -> tensorflow[version='1.14.0|2.0.0|2.4.1|2.2.0|2.1.0']

Package h5py conflicts for:
deepmd-kit[build=*gpu] -> tensorflow=2.9[build=cuda*] -> h5py[version='>=2.9.0|>=3.1.0']
deepmd-kit[build=*gpu] -> h5pyThe following specifications were found to be incompatible with your system:

  - feature:/linux-64::__glibc==2.17=0
  - feature:|@/linux-64::__glibc==2.17=0
  - cudatoolkit=11.6 -> __glibc[version='>=2.17,<3.0.a0']
  - cudatoolkit=11.6 -> libgcc-ng[version='>=7.5.0'] -> __glibc[version='>=2.17']
  - deepmd-kit[build=*gpu] -> tensorflow=2.9[build=cuda*] -> __cuda
  - horovod -> __glibc[version='>=2.17']
  - horovod -> cudatoolkit[version='>=11.6,<12'] -> __glibc[version='>=2.17,<3.0.a0']
  - lammps -> libgcc-ng[version='>=7.5.0'] -> __glibc[version='>=2.17']
  - libdeepmd[build=*gpu] -> __glibc[version='>=2.17']
  - libdeepmd[build=*gpu] -> cudatoolkit[version='>=11.6,<12'] -> __glibc[version='>=2.17,<3.0.a0']

Your installed version is: 2.17

Steps to Reproduce

Install deepmd-kit using conda.

Further Information, Files, and Links

No response

[njzjz]

Please follow the documentation:

Note: The off-line packages and conda packages require the GNU C Library 2.17 or above. The GPU version requires compatible NVIDIA driver to be installed in advance. It is possible to force conda to override detection when installation, but these requirements are still necessary during runtime.

[omidshy]

Apparently there is a new problem with the NVIDIA drivers on our cluster, since I installed deepmd-kit few days ago without any problem.

Thanks!