Merge remote-tracking branch 'upstream/master' into fix/groupby-nan

* upstream/master:
  Whatsnew for pydata#3419 (pydata#3422)
  Revert changes made in pydata#3358 (pydata#3411)
  Python3.6 idioms (pydata#3419)
  Temporarily mark pseudonetcdf-3.1 as incompatible (pydata#3420)
  Fix and add test for groupby_bins() isnan TypeError. (pydata#3405)
  Update where docstring to make return value type more clear (pydata#3408)
  tests for arrays with units (pydata#3238)

Author: dcherian

ci/requirements/py36-min-all-deps.yml

@@ -31,6 +31,7 @@ dependencies:
   - numba=0.44
   - numpy=1.14
   - pandas=0.24
+  # - pint  # See py36-min-nep18.yml
   - pip
   - pseudonetcdf=3.0
   - pydap=3.2

ci/requirements/py36-min-nep18.yml

@@ -2,14 +2,15 @@ name: xarray-tests
 channels:
   - conda-forge
 dependencies:
-  # Optional dependencies that require NEP18, such as sparse,
+  # Optional dependencies that require NEP18, such as sparse and pint,
   # require drastically newer packages than everything else
   - python=3.6
   - coveralls
   - dask=2.4
   - distributed=2.4
   - numpy=1.17
   - pandas=0.24
+  - pint=0.9  # Actually not enough as it doesn't implement __array_function__yet!
   - pytest
   - pytest-cov
   - pytest-env

ci/requirements/py36.yml

@@ -27,8 +27,9 @@ dependencies:
   - numba
   - numpy
   - pandas
+  - pint
   - pip
-  - pseudonetcdf
+  - pseudonetcdf<3.1  # FIXME https://github.com/pydata/xarray/issues/3409
   - pydap
   - pynio
   - pytest

ci/requirements/py37-windows.yml

@@ -27,8 +27,9 @@ dependencies:
   - numba
   - numpy
   - pandas
+  - pint
   - pip
-  - pseudonetcdf
+  - pseudonetcdf<3.1  # FIXME https://github.com/pydata/xarray/issues/3409
   - pydap
   # - pynio  # Not available on Windows
   - pytest

ci/requirements/py37.yml

@@ -27,8 +27,9 @@ dependencies:
   - numba
   - numpy
   - pandas
+  - pint
   - pip
-  - pseudonetcdf
+  - pseudonetcdf<3.1  # FIXME https://github.com/pydata/xarray/issues/3409
   - pydap
   - pynio
   - pytest

doc/gallery/plot_cartopy_facetgrid.py

@@ -1,4 +1,3 @@
-# -*- coding: utf-8 -*-
 """
 ==================================
 Multiple plots and map projections

doc/gallery/plot_colorbar_center.py

@@ -1,4 +1,3 @@
-# -*- coding: utf-8 -*-
 """
 ==================
 Centered colormaps

doc/gallery/plot_control_colorbar.py

@@ -1,4 +1,3 @@
-# -*- coding: utf-8 -*-
 """
 ===========================
 Control the plot's colorbar

doc/gallery/plot_lines_from_2d.py

@@ -1,4 +1,3 @@
-# -*- coding: utf-8 -*-
 """
 ==================================
 Multiple lines from a 2d DataArray

doc/gallery/plot_rasterio.py

@@ -1,4 +1,3 @@
-# -*- coding: utf-8 -*-
 """
 .. _recipes.rasterio:
 

doc/gallery/plot_rasterio_rgb.py

@@ -1,4 +1,3 @@
-# -*- coding: utf-8 -*-
 """
 .. _recipes.rasterio_rgb:
 

doc/installing.rst

@@ -66,6 +66,15 @@ For plotting
 Alternative data containers
 ~~~~~~~~~~~~~~~~~~~~~~~~~~~
 - `sparse <https://sparse.pydata.org/>`_: for sparse arrays
+- `pint <https://pint.readthedocs.io/>`_: for units of measure
+
+  .. note::
+
+    At the moment of writing, xarray requires a `highly experimental version of pint
+    <https://github.com/andrewgsavage/pint/pull/6>`_ (install with
+    ``pip install git+https://github.com/andrewgsavage/pint.git@refs/pull/6/head)``.
+    Even with it, interaction with non-numpy array libraries, e.g. dask or sparse, is broken.
+
 - Any numpy-like objects that support
   `NEP-18 <https://numpy.org/neps/nep-0018-array-function-protocol.html>`_.
   Note that while such libraries theoretically should work, they are untested.
@@ -85,7 +94,7 @@ dependencies:
   (`NEP-29 <https://numpy.org/neps/nep-0029-deprecation_policy.html>`_)
 - **pandas:** 12 months
 - **scipy:** 12 months
-- **sparse** and other libraries that rely on
+- **sparse, pint** and other libraries that rely on
   `NEP-18 <https://numpy.org/neps/nep-0018-array-function-protocol.html>`_
   for integration: very latest available versions only, until the technology will have
   matured. This extends to dask when used in conjunction with any of these libraries.

doc/whats-new.rst

@@ -24,6 +24,24 @@ Bug fixes
 - Fix grouping over variables with NaNs. (:issue:`2383`, :pull:`3406`).
   By `Deepak Cherian <https://github.com/dcherian>`_.
 
+New Features
+~~~~~~~~~~~~
+- Added integration tests against `pint <https://pint.readthedocs.io/>`_.
+  (:pull:`3238`) by `Justus Magin <https://github.com/keewis>`_.
+
+  .. note::
+
+    At the moment of writing, these tests *as well as the ability to use pint in general*
+    require `a highly experimental version of pint
+    <https://github.com/andrewgsavage/pint/pull/6>`_ (install with
+    ``pip install git+https://github.com/andrewgsavage/pint.git@refs/pull/6/head)``.
+    Even with it, interaction with non-numpy array libraries, e.g. dask or sparse, is broken.
+
+Bug fixes
+~~~~~~~~~
+- Fix regression introduced in v0.14.0 that would cause a crash if dask is installed
+  but cloudpickle isn't (:issue:`3401`) by `Rhys Doyle <https://github.com/rdoyle45>`_
+
 Documentation
 ~~~~~~~~~~~~~
 
@@ -32,6 +50,12 @@ Documentation
   datetime-like dimension is required. (:pull:`3400`)
   By `Justus Magin <https://github.com/keewis>`_.
 
+Internal Changes
+~~~~~~~~~~~~~~~~
+
+- Use Python 3.6 idioms throughout the codebase. (:pull:3419)
+  By `Maximilian Roos <https://github.com/max-sixty>`_
+
 .. _whats-new.0.14.0:
 
 v0.14.0 (14 Oct 2019)

setup.cfg

@@ -73,6 +73,8 @@ ignore_missing_imports = True
 ignore_missing_imports = True
 [mypy-pandas.*]
 ignore_missing_imports = True
+[mypy-pint.*]
+ignore_missing_imports = True
 [mypy-PseudoNetCDF.*]
 ignore_missing_imports = True
 [mypy-pydap.*]

xarray/_version.py

@@ -94,7 +94,7 @@ def run_command(commands, args, cwd=None, verbose=False, hide_stderr=False, env=
             return None, None
     else:
         if verbose:
-            print("unable to find command, tried %s" % (commands,))
+            print(f"unable to find command, tried {commands}")
         return None, None
     stdout = p.communicate()[0].strip()
     if sys.version_info[0] >= 3:
@@ -302,9 +302,8 @@ def git_pieces_from_vcs(tag_prefix, root, verbose, run_command=run_command):
             if verbose:
                 fmt = "tag '%s' doesn't start with prefix '%s'"
                 print(fmt % (full_tag, tag_prefix))
-            pieces["error"] = "tag '%s' doesn't start with prefix '%s'" % (
-                full_tag,
-                tag_prefix,
+            pieces["error"] = "tag '{}' doesn't start with prefix '{}'".format(
+                full_tag, tag_prefix
             )
             return pieces
         pieces["closest-tag"] = full_tag[len(tag_prefix) :]

xarray/backends/api.py

@@ -718,7 +718,7 @@ def open_mfdataset(
     autoclose=None,
     parallel=False,
     join="outer",
-    **kwargs
+    **kwargs,
 ):
     """Open multiple files as a single dataset.
 
@@ -1258,9 +1258,7 @@ def _validate_append_dim_and_encoding(
         return
     if append_dim:
         if append_dim not in ds.dims:
-            raise ValueError(
-                "{} not a valid dimension in the Dataset".format(append_dim)
-            )
+            raise ValueError(f"{append_dim} not a valid dimension in the Dataset")
     for data_var in ds_to_append:
         if data_var in ds:
             if append_dim is None:

xarray/backends/file_manager.py

@@ -83,7 +83,7 @@ def __init__(
         kwargs=None,
         lock=None,
         cache=None,
-        ref_counts=None
+        ref_counts=None,
     ):
         """Initialize a FileManager.
 
@@ -267,7 +267,7 @@ def __setstate__(self, state):
     def __repr__(self):
         args_string = ", ".join(map(repr, self._args))
         if self._mode is not _DEFAULT_MODE:
-            args_string += ", mode={!r}".format(self._mode)
+            args_string += f", mode={self._mode!r}"
         return "{}({!r}, {}, kwargs={})".format(
             type(self).__name__, self._opener, args_string, self._kwargs
         )

xarray/backends/locks.py

@@ -1,7 +1,7 @@
 import multiprocessing
 import threading
 import weakref
-from typing import Any, MutableMapping
+from typing import Any, MutableMapping, Optional
 
 try:
     from dask.utils import SerializableLock
@@ -62,7 +62,7 @@ def _get_lock_maker(scheduler=None):
     return _LOCK_MAKERS[scheduler]
 
 
-def _get_scheduler(get=None, collection=None):
+def _get_scheduler(get=None, collection=None) -> Optional[str]:
     """Determine the dask scheduler that is being used.
 
     None is returned if no dask scheduler is active.
@@ -86,10 +86,15 @@ def _get_scheduler(get=None, collection=None):
     except (ImportError, AttributeError):
         pass
 
-    if actual_get is dask.multiprocessing.get:
-        return "multiprocessing"
-    else:
-        return "threaded"
+    try:
+        # As of dask=2.6, dask.multiprocessing requires cloudpickle to be installed
+        # Dependency removed in https://github.com/dask/dask/pull/5511
+        if actual_get is dask.multiprocessing.get:
+            return "multiprocessing"
+    except AttributeError:
+        pass
+
+    return "threaded"
 
 
 def get_write_lock(key):

xarray/backends/netCDF4_.py

@@ -137,7 +137,7 @@ def _nc4_dtype(var):
     elif var.dtype.kind in ["i", "u", "f", "c", "S"]:
         dtype = var.dtype
     else:
-        raise ValueError("unsupported dtype for netCDF4 variable: {}".format(var.dtype))
+        raise ValueError(f"unsupported dtype for netCDF4 variable: {var.dtype}")
     return dtype
 
 

xarray/backends/netcdf3.py

@@ -50,7 +50,7 @@ def coerce_nc3_dtype(arr):
         cast_arr = arr.astype(new_dtype)
         if not (cast_arr == arr).all():
             raise ValueError(
-                "could not safely cast array from dtype %s to %s" % (dtype, new_dtype)
+                f"could not safely cast array from dtype {dtype} to {new_dtype}"
             )
         arr = cast_arr
     return arr

xarray/backends/pydap_.py

@@ -49,7 +49,7 @@ def _fix_attributes(attributes):
             # dot-separated key
             attributes.update(
                 {
-                    "{}.{}".format(k, k_child): v_child
+                    f"{k}.{k_child}": v_child
                     for k_child, v_child in attributes.pop(k).items()
                 }
             )

xarray/coding/cftime_offsets.py

@@ -638,7 +638,7 @@ def __apply__(self, other):
 
 
 _FREQUENCY_CONDITION = "|".join(_FREQUENCIES.keys())
-_PATTERN = r"^((?P<multiple>\d+)|())(?P<freq>({}))$".format(_FREQUENCY_CONDITION)
+_PATTERN = fr"^((?P<multiple>\d+)|())(?P<freq>({_FREQUENCY_CONDITION}))$"
 
 
 # pandas defines these offsets as "Tick" objects, which for instance have
@@ -759,19 +759,15 @@ def _generate_range(start, end, periods, offset):
 
             next_date = current + offset
             if next_date <= current:
-                raise ValueError(
-                    "Offset {offset} did not increment date".format(offset=offset)
-                )
+                raise ValueError(f"Offset {offset} did not increment date")
             current = next_date
     else:
         while current >= end:
             yield current
 
             next_date = current + offset
             if next_date >= current:
-                raise ValueError(
-                    "Offset {offset} did not decrement date".format(offset=offset)
-                )
+                raise ValueError(f"Offset {offset} did not decrement date")
             current = next_date
 
 

xarray/coding/cftimeindex.py

@@ -403,7 +403,7 @@ def shift(self, n, freq):
         from .cftime_offsets import to_offset
 
         if not isinstance(n, int):
-            raise TypeError("'n' must be an int, got {}.".format(n))
+            raise TypeError(f"'n' must be an int, got {n}.")
         if isinstance(freq, timedelta):
             return self + n * freq
         elif isinstance(freq, str):

xarray/coding/strings.py

@@ -228,7 +228,7 @@ def shape(self):
         return self.array.shape[:-1]
 
     def __repr__(self):
-        return "%s(%r)" % (type(self).__name__, self.array)
+        return "{}({!r})".format(type(self).__name__, self.array)
 
     def __getitem__(self, key):
         # require slicing the last dimension completely

xarray/coding/times.py

@@ -286,7 +286,7 @@ def infer_datetime_units(dates):
         # NumPy casting bug: https://github.com/numpy/numpy/issues/11096
         unique_timedeltas = to_timedelta_unboxed(unique_timedeltas)
     units = _infer_time_units_from_diff(unique_timedeltas)
-    return "%s since %s" % (units, reference_date)
+    return f"{units} since {reference_date}"
 
 
 def format_cftime_datetime(date):
@@ -341,7 +341,7 @@ def cftime_to_nptime(times):
 def _cleanup_netcdf_time_units(units):
     delta, ref_date = _unpack_netcdf_time_units(units)
     try:
-        units = "%s since %s" % (delta, format_timestamp(ref_date))
+        units = "{} since {}".format(delta, format_timestamp(ref_date))
     except OutOfBoundsDatetime:
         # don't worry about reifying the units if they're out of bounds
         pass

xarray/coding/variables.py

@@ -73,11 +73,8 @@ def __array__(self, dtype=None):
         return self.func(self.array)
 
     def __repr__(self):
-        return "%s(%r, func=%r, dtype=%r)" % (
-            type(self).__name__,
-            self.array,
-            self.func,
-            self.dtype,
+        return "{}({!r}, func={!r}, dtype={!r})".format(
+            type(self).__name__, self.array, self.func, self.dtype
         )
 
 
@@ -113,7 +110,7 @@ def unpack_for_decoding(var):
 
 def safe_setitem(dest, key, value, name=None):
     if key in dest:
-        var_str = " on variable {!r}".format(name) if name else ""
+        var_str = f" on variable {name!r}" if name else ""
         raise ValueError(
             "failed to prevent overwriting existing key {} in attrs{}. "
             "This is probably an encoding field used by xarray to describe "