restructuring completed

Author: mareikep

Diff for: .gitignore

@@ -99,3 +99,9 @@ ENV/
 
 # mypy
 .mypy_cache/
+
+# project files
+.idea/
+
+# pracmln configuration file(s)
+.pracmln.conf

Diff for: 3rdparty/toulbar2-0.9.7.0/x86_64/Linux/toulbar2

@@ -0,0 +1,2 @@
+recursive-include python2 *
+recursive-include python3 *

Diff for: 3rdparty/toulbar2-0.9.7.0/x86_64/Windows/toulbar2.exe

@@ -0,0 +1,80 @@
+cmake_minimum_required(VERSION 2.8.3)
+project(libpracmln)
+
+#####################
+## Default options ##
+#####################
+
+if(NOT CMAKE_BUILD_TYPE)
+  set(CMAKE_BUILD_TYPE Release CACHE STRING
+      "Choose the type of build, options are: None Debug Release RelWithDebInfo MinSizeRel."
+      FORCE)
+endif(NOT CMAKE_BUILD_TYPE)
+
+if(CMAKE_INSTALL_PREFIX_INITIALIZED_TO_DEFAULT)
+  set(CMAKE_INSTALL_PREFIX "${PROJECT_SOURCE_DIR}/install" CACHE PATH "Install path for project" FORCE)
+endif(CMAKE_INSTALL_PREFIX_INITIALIZED_TO_DEFAULT)
+
+###############
+## CXX Flags ##
+###############
+
+set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -DBT_USE_DOUBLE_PRECISION -Wall")
+# Unused warnings
+set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -Wuninitialized -Winit-self -Wunused-function -Wunused-label -Wunused-variable -Wunused-but-set-variable -Wunused-but-set-parameter")
+# Additional warnings
+set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -Warray-bounds -Wtype-limits -Wreturn-type -Wsequence-point -Wparentheses -Wmissing-braces -Wchar-subscripts -Wswitch -Wwrite-strings -Wenum-compare -Wempty-body -Wlogical-op")
+
+##################
+## Dependencies ##
+##################
+
+## System dependencies are found with CMake's conventions
+find_package(PythonLibs $ENV{PYTHONDIST} REQUIRED)
+
+if(NOT PYTHONLIBS_FOUND)
+  message(ERROR "PythonLibs not found!")
+endif()
+
+find_package(Boost REQUIRED COMPONENTS python-py35)
+
+##################
+## Header files ##
+##################
+
+# Display additional files in qtcreator
+add_custom_target(header_files SOURCES
+  include/pracmln/mln.h
+)
+
+###########
+## Build ##
+###########
+
+include_directories(
+  include
+  ${Boost_INCLUDE_DIRS}
+  ${PYTHON_INCLUDE_DIRS}
+)
+
+add_library(pracmln SHARED src/mln.cpp)
+target_link_libraries(pracmln
+  ${Boost_LIBRARIES}
+  ${PYTHON_LIBRARIES}
+)
+
+add_definitions(-DPROJECT_SRC_DIR="${PROJECT_SOURCE_DIR}")
+add_executable(test_mln src/test_mln.cpp)
+target_link_libraries(test_mln pracmln)
+
+#############
+## Install ##
+#############
+
+install(DIRECTORY "${PROJECT_SOURCE_DIR}/include" DESTINATION ${CMAKE_INSTALL_PREFIX})
+
+install(TARGETS pracmln
+  RUNTIME DESTINATION bin
+  LIBRARY DESTINATION lib
+  ARCHIVE DESTINATION lib
+)

Diff for: MANIFEST.in

@@ -0,0 +1,69 @@
+#ifndef __MLN_H__
+#define __MLN_H__
+
+// STL
+#include <string>
+#include <vector>
+
+class MLN{
+private:
+  struct Internal;
+  Internal *internal;
+
+  std::vector<std::string> methods;
+
+  size_t method;
+  size_t logic;
+  size_t grammar;
+
+  std::string mln;
+  std::string db;
+
+  bool initialized;
+  bool dbIsFile;
+  bool updateDB;
+  bool updateMLN;
+
+public:
+  MLN();
+  virtual ~MLN();
+
+  bool initialize();
+
+  std::vector<std::string> getMethods() const;
+  std::vector<std::string> getLogics() const;
+  std::vector<std::string> getGrammars() const;
+
+  bool setMethod(const std::string &method);
+  bool setLogic(const std::string &logic);
+  bool setGrammar(const std::string &grammar);
+  void setMLN(const std::string &mln);
+  void setDB(const std::string &db, const bool isFile = true);
+  void setQuery(const std::vector<std::string> &query);
+
+  std::string getMethod() const;
+  std::string getLogic() const;
+  std::string getGrammar() const;
+  std::string getMLN() const;
+  std::string getDB() const;
+  std::vector<std::string> getQuery() const;
+
+  void setCWPreds(const std::vector<std::string> &cwPreds);
+  void setMaxSteps(const int value);
+  void setNumChains(const int value);
+  void setUseMultiCPU(const bool enable);
+
+  std::vector<std::string> getCWPreds() const;
+  int getMaxSteps() const;
+  int getNumChains() const;
+  bool getUseMultiCPU() const;
+
+  bool infer(std::vector<std::string> &results, std::vector<double> &probabilities);
+
+private:
+  bool init();
+
+  bool isInOptions(const std::string &option, const std::vector<std::string> &options, size_t &value) const;
+};
+
+#endif //__MLN_H__