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installation problem #164
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Hi @zeffiro, The problem is related to the installation of the Try running Let me know if this solve your issue. |
I started again from a fresh Ubuntu-22.04 install in WSL2. I also installed the Visual C++ package. This time I got no error until I started python and tried to import AMICO. tz@ALPINE:/mnt/e$ sudo apt install libblas-dev liblapack-dev gfortran
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@zeffiro, this time it seems that the I would suggest you to reinstall AMICO forcing the reinstallation of all its requirements: |
I tried that, but got the same problem when I tried to import AMICO. Any other suggestions? tz@ALPINE:/mnt/e$ pip install dmri-amico --no-cache-dir --force-reinstall
For the moment I have the older MATLAB version running smoothly, but I would like to transition to the python version if possible. Thanks for the help.. |
Have you tried installing it in a virtual environment? Try the following steps:
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I suspect 'pip' and 'python3' do not point to the same Python installation, i.e. 'pip' actually installing all packages in a different Python installation than the one pointed by the 'python3' command. |
Hi @zeffiro, We've just released To install the new version, simply run |
When attempting to install dMRI-AMICO in Ubuntu I get an error:
tz@ALPINE:/mnt/e$ pip install dmri-amico
Defaulting to user installation because normal site-packages is not writeable
Collecting dmri-amico
Using cached dmri_amico-1.5.4-py3-none-any.whl
Collecting dipy>=1.0 (from dmri-amico)
Using cached dipy-1.7.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (8.7 MB)
Collecting joblib>=1.0.1 (from dmri-amico)
Using cached joblib-1.2.0-py3-none-any.whl (297 kB)
Requirement already satisfied: numpy>=1.12 in /home/tz/.local/lib/python3.10/site-packages (from dmri-amico) (1.24.3)
Collecting packaging (from dmri-amico)
Using cached packaging-23.1-py3-none-any.whl (48 kB)
Requirement already satisfied: scipy>=1.0 in /home/tz/.local/lib/python3.10/site-packages (from dmri-amico) (1.10.1)
Collecting spams>=2.6.5.2 (from dmri-amico)
Using cached spams-2.6.5.4.tar.gz (2.0 MB)
Installing build dependencies ... done
Getting requirements to build wheel ... done
Preparing metadata (pyproject.toml) ... done
Collecting tqdm>=4.56.0 (from dmri-amico)
Using cached tqdm-4.65.0-py3-none-any.whl (77 kB)
Collecting nibabel>=3.0.0 (from dipy>=1.0->dmri-amico)
Using cached nibabel-5.1.0-py3-none-any.whl (3.3 MB)
Collecting h5py>=2.8.0 (from dipy>=1.0->dmri-amico)
Using cached h5py-3.8.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.6 MB)
Collecting Pillow>=6.0 (from spams>=2.6.5.2->dmri-amico)
Using cached Pillow-9.5.0-cp310-cp310-manylinux_2_28_x86_64.whl (3.4 MB)
Building wheels for collected packages: spams
Building wheel for spams (pyproject.toml) ... error
error: subprocess-exited-with-error
× Building wheel for spams (pyproject.toml) did not run successfully.
│ exit code: 1
╰─> [214 lines of output]
running bdist_wheel
running build
running build_py
creating build
.....
Have you seen this before?
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